Strain Fitness in Pseudomonas sp. S08-1 around OH686_23035

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_23030 and OH686_23035 are separated by 21 nucleotidesOH686_23035 and OH686_23040 overlap by 79 nucleotidesOH686_23040 and OH686_23045 are separated by 54 nucleotidesOH686_23045 and OH686_23050 overlap by 4 nucleotides OH686_23030: OH686_23030 - hypothetical protein, at 4,672,814 to 4,673,812 _23030 OH686_23035: OH686_23035 - hypothetical protein' product='hypothetical protein, at 4,673,834 to 4,674,061 _23035 OH686_23040: OH686_23040 - CDS, at 4,673,983 to 4,674,126 _23040 OH686_23045: OH686_23045 - hypothetical protein, at 4,674,181 to 4,674,813 _23045 OH686_23050: OH686_23050 - hypothetical protein, at 4,674,810 to 4,676,171 _23050 Position (kb) 4673 4674 4675Strain fitness (log2 ratio) -2 -1 0 1 2at 4672.898 kb on + strandat 4672.903 kb on - strandat 4672.964 kb on - strand, within OH686_23030at 4672.964 kb on - strand, within OH686_23030at 4672.967 kb on - strand, within OH686_23030at 4673.175 kb on + strand, within OH686_23030at 4673.217 kb on - strand, within OH686_23030at 4673.348 kb on - strand, within OH686_23030at 4673.404 kb on + strand, within OH686_23030at 4673.405 kb on - strand, within OH686_23030at 4673.405 kb on - strand, within OH686_23030at 4673.405 kb on - strand, within OH686_23030at 4673.434 kb on - strand, within OH686_23030at 4673.434 kb on - strand, within OH686_23030at 4673.453 kb on - strand, within OH686_23030at 4673.458 kb on + strand, within OH686_23030at 4673.486 kb on - strand, within OH686_23030at 4673.506 kb on + strand, within OH686_23030at 4673.507 kb on - strand, within OH686_23030at 4673.507 kb on - strand, within OH686_23030at 4673.625 kb on - strand, within OH686_23030at 4673.631 kb on - strand, within OH686_23030at 4673.658 kb on + strand, within OH686_23030at 4673.702 kb on + strand, within OH686_23030at 4673.702 kb on + strand, within OH686_23030at 4673.704 kb on + strand, within OH686_23030at 4673.708 kb on + strand, within OH686_23030at 4673.709 kb on - strand, within OH686_23030at 4673.745 kb on - strandat 4673.959 kb on - strand, within OH686_23035at 4674.028 kb on + strandat 4674.040 kb on + strandat 4674.040 kb on + strandat 4674.041 kb on - strandat 4674.044 kb on + strandat 4674.083 kb on - strand, within OH686_23040at 4674.162 kb on + strandat 4674.284 kb on + strand, within OH686_23045at 4674.294 kb on - strand, within OH686_23045at 4674.301 kb on - strand, within OH686_23045at 4674.397 kb on + strand, within OH686_23045at 4674.478 kb on - strand, within OH686_23045at 4674.489 kb on + strand, within OH686_23045at 4674.489 kb on + strand, within OH686_23045at 4674.489 kb on + strand, within OH686_23045at 4674.489 kb on + strand, within OH686_23045at 4674.489 kb on + strand, within OH686_23045at 4674.490 kb on - strand, within OH686_23045at 4674.490 kb on - strand, within OH686_23045at 4674.490 kb on - strand, within OH686_23045at 4674.490 kb on - strand, within OH686_23045at 4674.491 kb on + strand, within OH686_23045at 4674.523 kb on - strand, within OH686_23045at 4674.535 kb on + strand, within OH686_23045at 4674.535 kb on + strand, within OH686_23045at 4674.536 kb on - strand, within OH686_23045at 4674.536 kb on - strand, within OH686_23045at 4674.559 kb on + strand, within OH686_23045at 4674.559 kb on + strand, within OH686_23045at 4674.562 kb on + strand, within OH686_23045at 4674.602 kb on + strand, within OH686_23045at 4674.602 kb on + strand, within OH686_23045at 4674.602 kb on + strand, within OH686_23045at 4674.602 kb on + strand, within OH686_23045at 4674.602 kb on + strand, within OH686_23045at 4674.602 kb on + strand, within OH686_23045at 4674.603 kb on - strand, within OH686_23045at 4674.603 kb on - strand, within OH686_23045at 4674.603 kb on - strand, within OH686_23045at 4674.698 kb on + strand, within OH686_23045at 4674.699 kb on - strand, within OH686_23045at 4674.712 kb on + strand, within OH686_23045at 4674.713 kb on - strand, within OH686_23045at 4674.713 kb on - strand, within OH686_23045at 4674.713 kb on - strand, within OH686_23045at 4674.713 kb on - strand, within OH686_23045at 4674.730 kb on + strand, within OH686_23045at 4674.730 kb on + strand, within OH686_23045at 4674.731 kb on - strand, within OH686_23045at 4674.731 kb on - strand, within OH686_23045at 4674.763 kb on + strandat 4674.764 kb on - strandat 4674.764 kb on - strandat 4674.790 kb on + strandat 4674.790 kb on + strandat 4674.790 kb on + strandat 4674.791 kb on - strandat 4674.791 kb on - strandat 4674.791 kb on - strandat 4674.791 kb on - strandat 4674.791 kb on - strandat 4674.791 kb on - strandat 4674.796 kb on + strandat 4674.796 kb on + strandat 4674.796 kb on + strandat 4674.856 kb on + strandat 4674.857 kb on - strandat 4674.898 kb on + strandat 4674.898 kb on + strandat 4674.898 kb on + strandat 4674.898 kb on + strandat 4674.898 kb on + strandat 4674.898 kb on + strandat 4674.898 kb on + strandat 4674.898 kb on + strandat 4674.898 kb on + strandat 4674.899 kb on - strandat 4674.899 kb on - strandat 4674.899 kb on - strandat 4674.899 kb on - strandat 4674.913 kb on + strandat 4674.914 kb on - strandat 4674.914 kb on - strandat 4674.914 kb on - strandat 4674.914 kb on - strandat 4674.914 kb on - strandat 4674.914 kb on - strandat 4674.992 kb on + strand, within OH686_23050at 4674.992 kb on + strand, within OH686_23050at 4674.992 kb on + strand, within OH686_23050at 4674.992 kb on + strand, within OH686_23050

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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4,672,898 + +0.4
4,672,903 - -0.2
4,672,964 - OH686_23030 0.15 -0.1
4,672,964 - OH686_23030 0.15 +0.3
4,672,967 - OH686_23030 0.15 -0.7
4,673,175 + OH686_23030 0.36 -2.1
4,673,217 - OH686_23030 0.40 -0.3
4,673,348 - OH686_23030 0.53 +0.2
4,673,404 + OH686_23030 0.59 -0.2
4,673,405 - OH686_23030 0.59 +1.4
4,673,405 - OH686_23030 0.59 -0.4
4,673,405 - OH686_23030 0.59 +0.9
4,673,434 - OH686_23030 0.62 +1.7
4,673,434 - OH686_23030 0.62 +0.2
4,673,453 - OH686_23030 0.64 +0.3
4,673,458 + OH686_23030 0.64 -0.8
4,673,486 - OH686_23030 0.67 +0.7
4,673,506 + OH686_23030 0.69 +0.4
4,673,507 - OH686_23030 0.69 -0.4
4,673,507 - OH686_23030 0.69 +0.1
4,673,625 - OH686_23030 0.81 +0.5
4,673,631 - OH686_23030 0.82 -1.5
4,673,658 + OH686_23030 0.84 -0.5
4,673,702 + OH686_23030 0.89 +0.5
4,673,702 + OH686_23030 0.89 +0.8
4,673,704 + OH686_23030 0.89 -0.6
4,673,708 + OH686_23030 0.89 -1.1
4,673,709 - OH686_23030 0.90 +0.1
4,673,745 - -1.4
4,673,959 - OH686_23035 0.55 -1.6
4,674,028 + +0.1
4,674,040 + -0.1
4,674,040 + +0.0
4,674,041 - +0.1
4,674,044 + +0.1
4,674,083 - OH686_23040 0.69 -1.1
4,674,162 + +1.1
4,674,284 + OH686_23045 0.16 +0.5
4,674,294 - OH686_23045 0.18 +0.6
4,674,301 - OH686_23045 0.19 +1.2
4,674,397 + OH686_23045 0.34 +0.7
4,674,478 - OH686_23045 0.47 -0.7
4,674,489 + OH686_23045 0.49 +0.7
4,674,489 + OH686_23045 0.49 -1.2
4,674,489 + OH686_23045 0.49 -0.0
4,674,489 + OH686_23045 0.49 +0.3
4,674,489 + OH686_23045 0.49 -0.1
4,674,490 - OH686_23045 0.49 -0.3
4,674,490 - OH686_23045 0.49 +1.1
4,674,490 - OH686_23045 0.49 -0.3
4,674,490 - OH686_23045 0.49 -1.5
4,674,491 + OH686_23045 0.49 +0.5
4,674,523 - OH686_23045 0.54 +0.4
4,674,535 + OH686_23045 0.56 +1.4
4,674,535 + OH686_23045 0.56 -0.9
4,674,536 - OH686_23045 0.56 +0.6
4,674,536 - OH686_23045 0.56 +0.8
4,674,559 + OH686_23045 0.60 +0.1
4,674,559 + OH686_23045 0.60 +2.1
4,674,562 + OH686_23045 0.60 -0.2
4,674,602 + OH686_23045 0.67 -0.4
4,674,602 + OH686_23045 0.67 +0.0
4,674,602 + OH686_23045 0.67 +0.6
4,674,602 + OH686_23045 0.67 +1.6
4,674,602 + OH686_23045 0.67 +0.3
4,674,602 + OH686_23045 0.67 -0.9
4,674,603 - OH686_23045 0.67 +0.2
4,674,603 - OH686_23045 0.67 -0.5
4,674,603 - OH686_23045 0.67 +0.2
4,674,698 + OH686_23045 0.82 -0.7
4,674,699 - OH686_23045 0.82 +0.4
4,674,712 + OH686_23045 0.84 +0.0
4,674,713 - OH686_23045 0.84 +0.6
4,674,713 - OH686_23045 0.84 -0.8
4,674,713 - OH686_23045 0.84 +1.9
4,674,713 - OH686_23045 0.84 +0.4
4,674,730 + OH686_23045 0.87 +0.6
4,674,730 + OH686_23045 0.87 -0.7
4,674,731 - OH686_23045 0.87 +0.1
4,674,731 - OH686_23045 0.87 -0.5
4,674,763 + +0.6
4,674,764 - -0.8
4,674,764 - +0.1
4,674,790 + -1.8
4,674,790 + +0.3
4,674,790 + -0.2
4,674,791 - -2.3
4,674,791 - +0.1
4,674,791 - +0.9
4,674,791 - -2.4
4,674,791 - -0.1
4,674,791 - +0.3
4,674,796 + +0.0
4,674,796 + +0.1
4,674,796 + -0.4
4,674,856 + +0.1
4,674,857 - -0.5
4,674,898 + -0.3
4,674,898 + +0.4
4,674,898 + -0.1
4,674,898 + +0.7
4,674,898 + -0.4
4,674,898 + -0.1
4,674,898 + -0.7
4,674,898 + +0.5
4,674,898 + +0.2
4,674,899 - -1.3
4,674,899 - -0.5
4,674,899 - -0.5
4,674,899 - -0.3
4,674,913 + +0.5
4,674,914 - -0.6
4,674,914 - +0.0
4,674,914 - -0.2
4,674,914 - -0.9
4,674,914 - -1.4
4,674,914 - +0.3
4,674,992 + OH686_23050 0.13 +0.6
4,674,992 + OH686_23050 0.13 -1.2
4,674,992 + OH686_23050 0.13 +1.1
4,674,992 + OH686_23050 0.13 +0.6

Or see this region's nucleotide sequence