Strain Fitness in Pseudomonas sp. S08-1 around OH686_17505

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_17495 and OH686_17500 overlap by 1 nucleotidesOH686_17500 and OH686_17505 are separated by 14 nucleotidesOH686_17505 and OH686_17510 are separated by 98 nucleotidesOH686_17510 and OH686_17515 are separated by 24 nucleotides OH686_17495: OH686_17495 - Fe-S protein assembly chaperone HscA, at 3,653,357 to 3,655,225 _17495 OH686_17500: OH686_17500 - ferredoxin, 2Fe-2S type, ISC system, at 3,655,225 to 3,655,566 _17500 OH686_17505: OH686_17505 - FeS assembly protein IscX, at 3,655,581 to 3,655,781 _17505 OH686_17510: OH686_17510 - Nucleoside diphosphate kinase , at 3,655,880 to 3,656,311 _17510 OH686_17515: OH686_17515 - 23S rRNA (adenine(2503)-C(2))-methyltransferase, at 3,656,336 to 3,657,481 _17515 Position (kb) 3655 3656Strain fitness (log2 ratio) -3 -2 -1 0 1at 3655.656 kb on + strand, within OH686_17505at 3655.656 kb on + strand, within OH686_17505at 3655.657 kb on - strand, within OH686_17505at 3655.657 kb on - strand, within OH686_17505at 3655.657 kb on - strand, within OH686_17505at 3655.657 kb on - strand, within OH686_17505at 3655.741 kb on + strand, within OH686_17505at 3655.741 kb on + strand, within OH686_17505at 3655.741 kb on + strand, within OH686_17505at 3655.741 kb on + strand, within OH686_17505at 3655.741 kb on + strand, within OH686_17505at 3655.742 kb on - strand, within OH686_17505at 3655.742 kb on - strand, within OH686_17505at 3655.742 kb on - strand, within OH686_17505at 3655.742 kb on - strand, within OH686_17505at 3656.627 kb on + strand, within OH686_17515at 3656.627 kb on + strand, within OH686_17515at 3656.627 kb on + strand, within OH686_17515at 3656.627 kb on + strand, within OH686_17515at 3656.627 kb on + strand, within OH686_17515at 3656.627 kb on + strand, within OH686_17515at 3656.627 kb on + strand, within OH686_17515at 3656.627 kb on + strand, within OH686_17515at 3656.627 kb on + strand, within OH686_17515at 3656.627 kb on + strand, within OH686_17515at 3656.627 kb on + strand, within OH686_17515at 3656.627 kb on + strand, within OH686_17515at 3656.627 kb on + strand, within OH686_17515at 3656.627 kb on + strand, within OH686_17515at 3656.627 kb on + strand, within OH686_17515at 3656.627 kb on + strand, within OH686_17515at 3656.628 kb on - strand, within OH686_17515at 3656.628 kb on - strand, within OH686_17515at 3656.628 kb on - strand, within OH686_17515

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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3,655,656 + OH686_17505 0.37 -2.1
3,655,656 + OH686_17505 0.37 -1.7
3,655,657 - OH686_17505 0.38 -1.9
3,655,657 - OH686_17505 0.38 -1.5
3,655,657 - OH686_17505 0.38 -0.4
3,655,657 - OH686_17505 0.38 -2.0
3,655,741 + OH686_17505 0.80 -0.4
3,655,741 + OH686_17505 0.80 -2.5
3,655,741 + OH686_17505 0.80 -1.2
3,655,741 + OH686_17505 0.80 -1.8
3,655,741 + OH686_17505 0.80 -1.0
3,655,742 - OH686_17505 0.80 -1.5
3,655,742 - OH686_17505 0.80 -3.0
3,655,742 - OH686_17505 0.80 -3.4
3,655,742 - OH686_17505 0.80 -0.4
3,656,627 + OH686_17515 0.25 +0.0
3,656,627 + OH686_17515 0.25 -0.1
3,656,627 + OH686_17515 0.25 +0.7
3,656,627 + OH686_17515 0.25 +1.7
3,656,627 + OH686_17515 0.25 +1.0
3,656,627 + OH686_17515 0.25 +1.4
3,656,627 + OH686_17515 0.25 -0.1
3,656,627 + OH686_17515 0.25 +0.4
3,656,627 + OH686_17515 0.25 +0.2
3,656,627 + OH686_17515 0.25 +0.2
3,656,627 + OH686_17515 0.25 -0.6
3,656,627 + OH686_17515 0.25 -1.3
3,656,627 + OH686_17515 0.25 -0.4
3,656,627 + OH686_17515 0.25 -1.1
3,656,627 + OH686_17515 0.25 +0.5
3,656,627 + OH686_17515 0.25 -0.8
3,656,628 - OH686_17515 0.25 -0.4
3,656,628 - OH686_17515 0.25 -0.1
3,656,628 - OH686_17515 0.25 -0.7

Or see this region's nucleotide sequence