Strain Fitness in Pseudomonas sp. S08-1 around OH686_16065

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_16060 and OH686_16065 overlap by 4 nucleotidesOH686_16065 and OH686_16070 are separated by 194 nucleotidesOH686_16070 and OH686_16075 overlap by 4 nucleotides OH686_16060: OH686_16060 - tRNA (uracil(54)-C(5))-methyltransferase, at 3,359,471 to 3,360,556 _16060 OH686_16065: OH686_16065 - Xanthine/uracil/thiamine/ascorbate permease family protein, at 3,360,553 to 3,361,851 _16065 OH686_16070: OH686_16070 - DJ-1/YajL/PfpI superfamily, includes chaperone protein YajL (former ThiJ), parkinsonism-associated protein DJ-1, PfpI, Hsp31, at 3,362,046 to 3,362,603 _16070 OH686_16075: OH686_16075 - hypothetical protein, at 3,362,600 to 3,363,049 _16075 Position (kb) 3360 3361 3362Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3359.610 kb on + strand, within OH686_16060at 3359.610 kb on + strand, within OH686_16060at 3359.610 kb on + strand, within OH686_16060at 3359.610 kb on + strand, within OH686_16060at 3359.610 kb on + strand, within OH686_16060at 3359.610 kb on + strand, within OH686_16060at 3359.610 kb on + strand, within OH686_16060at 3359.610 kb on + strand, within OH686_16060at 3359.610 kb on + strand, within OH686_16060at 3359.610 kb on + strand, within OH686_16060at 3359.610 kb on + strand, within OH686_16060at 3359.610 kb on + strand, within OH686_16060at 3359.610 kb on + strand, within OH686_16060at 3359.610 kb on + strand, within OH686_16060at 3359.610 kb on + strand, within OH686_16060at 3359.610 kb on + strand, within OH686_16060at 3359.611 kb on - strand, within OH686_16060at 3359.611 kb on - strand, within OH686_16060at 3359.611 kb on - strand, within OH686_16060at 3359.611 kb on - strand, within OH686_16060at 3359.611 kb on - strand, within OH686_16060at 3359.611 kb on - strand, within OH686_16060at 3359.611 kb on - strand, within OH686_16060at 3359.611 kb on - strand, within OH686_16060at 3359.611 kb on - strand, within OH686_16060at 3359.611 kb on - strand, within OH686_16060at 3359.611 kb on - strand, within OH686_16060at 3359.611 kb on - strand, within OH686_16060at 3359.611 kb on - strand, within OH686_16060at 3359.611 kb on - strand, within OH686_16060at 3359.617 kb on + strand, within OH686_16060at 3359.618 kb on - strand, within OH686_16060at 3359.700 kb on + strand, within OH686_16060at 3359.701 kb on - strand, within OH686_16060at 3359.920 kb on - strand, within OH686_16060at 3359.920 kb on - strand, within OH686_16060at 3359.920 kb on - strand, within OH686_16060at 3359.920 kb on - strand, within OH686_16060at 3359.951 kb on + strand, within OH686_16060at 3360.072 kb on + strand, within OH686_16060at 3360.072 kb on + strand, within OH686_16060at 3360.072 kb on + strand, within OH686_16060at 3360.072 kb on + strand, within OH686_16060at 3360.072 kb on + strand, within OH686_16060at 3360.073 kb on - strand, within OH686_16060at 3360.186 kb on + strand, within OH686_16060at 3360.186 kb on + strand, within OH686_16060at 3360.187 kb on - strand, within OH686_16060at 3360.187 kb on - strand, within OH686_16060at 3360.187 kb on - strand, within OH686_16060at 3360.187 kb on - strand, within OH686_16060at 3360.187 kb on - strand, within OH686_16060at 3360.233 kb on + strand, within OH686_16060at 3360.233 kb on + strand, within OH686_16060at 3360.233 kb on + strand, within OH686_16060at 3360.233 kb on + strand, within OH686_16060at 3360.233 kb on + strand, within OH686_16060at 3360.233 kb on + strand, within OH686_16060at 3360.234 kb on - strand, within OH686_16060at 3360.378 kb on + strand, within OH686_16060at 3360.378 kb on + strand, within OH686_16060at 3360.378 kb on + strand, within OH686_16060at 3360.378 kb on + strand, within OH686_16060at 3360.379 kb on - strand, within OH686_16060at 3360.379 kb on - strand, within OH686_16060at 3360.379 kb on - strand, within OH686_16060at 3360.429 kb on + strand, within OH686_16060at 3360.452 kb on + strandat 3360.452 kb on + strandat 3360.528 kb on + strandat 3360.528 kb on + strandat 3360.529 kb on - strandat 3360.602 kb on - strandat 3360.883 kb on + strand, within OH686_16065at 3360.883 kb on + strand, within OH686_16065at 3360.884 kb on - strand, within OH686_16065at 3360.944 kb on + strand, within OH686_16065at 3360.944 kb on + strand, within OH686_16065at 3360.944 kb on + strand, within OH686_16065at 3360.944 kb on + strand, within OH686_16065at 3360.944 kb on + strand, within OH686_16065at 3360.944 kb on + strand, within OH686_16065at 3360.944 kb on + strand, within OH686_16065at 3360.944 kb on + strand, within OH686_16065at 3360.944 kb on + strand, within OH686_16065at 3360.944 kb on + strand, within OH686_16065at 3360.944 kb on + strand, within OH686_16065at 3360.944 kb on + strand, within OH686_16065at 3360.945 kb on - strand, within OH686_16065at 3360.945 kb on - strand, within OH686_16065at 3360.945 kb on - strand, within OH686_16065at 3360.945 kb on - strand, within OH686_16065at 3360.945 kb on - strand, within OH686_16065at 3360.945 kb on - strand, within OH686_16065at 3360.945 kb on - strand, within OH686_16065at 3360.945 kb on - strand, within OH686_16065at 3360.945 kb on - strand, within OH686_16065at 3360.945 kb on - strand, within OH686_16065at 3360.945 kb on - strand, within OH686_16065at 3360.945 kb on - strand, within OH686_16065at 3360.945 kb on - strand, within OH686_16065at 3360.945 kb on - strand, within OH686_16065at 3360.945 kb on - strand, within OH686_16065at 3360.945 kb on - strand, within OH686_16065at 3361.159 kb on - strand, within OH686_16065at 3361.270 kb on - strand, within OH686_16065at 3361.473 kb on + strand, within OH686_16065at 3361.473 kb on + strand, within OH686_16065at 3361.474 kb on - strand, within OH686_16065at 3361.474 kb on - strand, within OH686_16065at 3361.474 kb on - strand, within OH686_16065at 3361.474 kb on - strand, within OH686_16065at 3361.474 kb on - strand, within OH686_16065at 3361.592 kb on + strand, within OH686_16065at 3361.592 kb on + strand, within OH686_16065at 3361.592 kb on + strand, within OH686_16065at 3361.592 kb on + strand, within OH686_16065at 3361.592 kb on + strand, within OH686_16065at 3361.592 kb on + strand, within OH686_16065at 3361.592 kb on + strand, within OH686_16065at 3361.593 kb on - strand, within OH686_16065at 3361.593 kb on - strand, within OH686_16065at 3361.593 kb on - strand, within OH686_16065at 3361.593 kb on - strand, within OH686_16065at 3361.593 kb on - strand, within OH686_16065at 3361.593 kb on - strand, within OH686_16065at 3361.593 kb on - strand, within OH686_16065at 3361.593 kb on - strand, within OH686_16065at 3361.593 kb on - strand, within OH686_16065at 3361.593 kb on - strand, within OH686_16065at 3361.593 kb on - strand, within OH686_16065at 3361.593 kb on - strand, within OH686_16065at 3361.640 kb on + strand, within OH686_16065at 3361.640 kb on + strand, within OH686_16065at 3361.641 kb on - strand, within OH686_16065at 3361.641 kb on - strand, within OH686_16065at 3361.641 kb on - strand, within OH686_16065at 3361.760 kb on + strandat 3361.760 kb on + strandat 3361.760 kb on + strandat 3361.760 kb on + strandat 3361.760 kb on + strandat 3361.760 kb on + strandat 3361.760 kb on + strandat 3361.760 kb on + strandat 3361.760 kb on + strandat 3361.760 kb on + strandat 3361.761 kb on - strandat 3361.761 kb on - strandat 3361.761 kb on - strandat 3361.761 kb on - strandat 3361.761 kb on - strandat 3361.865 kb on - strandat 3361.972 kb on + strandat 3361.972 kb on + strandat 3361.973 kb on - strandat 3361.973 kb on - strandat 3361.973 kb on - strandat 3361.973 kb on - strandat 3361.973 kb on - strandat 3361.973 kb on - strandat 3361.974 kb on + strandat 3361.974 kb on + strandat 3361.974 kb on + strandat 3361.974 kb on + strandat 3361.974 kb on + strandat 3361.975 kb on - strandat 3361.975 kb on - strandat 3361.975 kb on - strandat 3361.975 kb on - strandat 3361.975 kb on - strandat 3361.975 kb on - strandat 3362.001 kb on + strandat 3362.002 kb on - strandat 3362.140 kb on + strand, within OH686_16070at 3362.140 kb on + strand, within OH686_16070at 3362.140 kb on + strand, within OH686_16070at 3362.140 kb on + strand, within OH686_16070at 3362.140 kb on + strand, within OH686_16070at 3362.140 kb on + strand, within OH686_16070at 3362.140 kb on + strand, within OH686_16070at 3362.140 kb on + strand, within OH686_16070at 3362.140 kb on + strand, within OH686_16070at 3362.140 kb on + strand, within OH686_16070at 3362.140 kb on + strand, within OH686_16070at 3362.140 kb on + strand, within OH686_16070at 3362.141 kb on - strand, within OH686_16070at 3362.141 kb on - strand, within OH686_16070at 3362.141 kb on - strand, within OH686_16070at 3362.141 kb on - strand, within OH686_16070at 3362.141 kb on - strand, within OH686_16070at 3362.141 kb on - strand, within OH686_16070at 3362.141 kb on - strand, within OH686_16070at 3362.141 kb on - strand, within OH686_16070at 3362.141 kb on - strand, within OH686_16070at 3362.141 kb on - strand, within OH686_16070at 3362.141 kb on - strand, within OH686_16070at 3362.141 kb on - strand, within OH686_16070at 3362.143 kb on + strand, within OH686_16070at 3362.143 kb on + strand, within OH686_16070at 3362.143 kb on + strand, within OH686_16070at 3362.143 kb on + strand, within OH686_16070at 3362.143 kb on + strand, within OH686_16070at 3362.143 kb on + strand, within OH686_16070at 3362.143 kb on + strand, within OH686_16070at 3362.143 kb on + strand, within OH686_16070at 3362.144 kb on - strand, within OH686_16070at 3362.144 kb on - strand, within OH686_16070at 3362.144 kb on - strand, within OH686_16070at 3362.385 kb on + strand, within OH686_16070

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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3,359,610 + OH686_16060 0.13 -0.7
3,359,610 + OH686_16060 0.13 -0.9
3,359,610 + OH686_16060 0.13 +0.0
3,359,610 + OH686_16060 0.13 +0.5
3,359,610 + OH686_16060 0.13 -0.3
3,359,610 + OH686_16060 0.13 +0.1
3,359,610 + OH686_16060 0.13 +0.3
3,359,610 + OH686_16060 0.13 -0.7
3,359,610 + OH686_16060 0.13 -0.4
3,359,610 + OH686_16060 0.13 +0.2
3,359,610 + OH686_16060 0.13 +0.3
3,359,610 + OH686_16060 0.13 -1.3
3,359,610 + OH686_16060 0.13 +0.1
3,359,610 + OH686_16060 0.13 -1.4
3,359,610 + OH686_16060 0.13 +0.2
3,359,610 + OH686_16060 0.13 -1.1
3,359,611 - OH686_16060 0.13 +0.4
3,359,611 - OH686_16060 0.13 -0.2
3,359,611 - OH686_16060 0.13 -1.4
3,359,611 - OH686_16060 0.13 +0.3
3,359,611 - OH686_16060 0.13 +0.5
3,359,611 - OH686_16060 0.13 -0.2
3,359,611 - OH686_16060 0.13 +0.4
3,359,611 - OH686_16060 0.13 -1.0
3,359,611 - OH686_16060 0.13 +0.2
3,359,611 - OH686_16060 0.13 -0.4
3,359,611 - OH686_16060 0.13 -0.3
3,359,611 - OH686_16060 0.13 -1.1
3,359,611 - OH686_16060 0.13 -1.6
3,359,611 - OH686_16060 0.13 +0.3
3,359,617 + OH686_16060 0.13 -0.1
3,359,618 - OH686_16060 0.14 +1.3
3,359,700 + OH686_16060 0.21 +0.5
3,359,701 - OH686_16060 0.21 -0.7
3,359,920 - OH686_16060 0.41 -0.1
3,359,920 - OH686_16060 0.41 +0.2
3,359,920 - OH686_16060 0.41 -0.3
3,359,920 - OH686_16060 0.41 -0.4
3,359,951 + OH686_16060 0.44 -1.0
3,360,072 + OH686_16060 0.55 +0.7
3,360,072 + OH686_16060 0.55 +0.2
3,360,072 + OH686_16060 0.55 -0.7
3,360,072 + OH686_16060 0.55 -1.4
3,360,072 + OH686_16060 0.55 +0.6
3,360,073 - OH686_16060 0.55 -1.1
3,360,186 + OH686_16060 0.66 -1.5
3,360,186 + OH686_16060 0.66 -2.1
3,360,187 - OH686_16060 0.66 -0.2
3,360,187 - OH686_16060 0.66 +0.0
3,360,187 - OH686_16060 0.66 -1.7
3,360,187 - OH686_16060 0.66 -0.2
3,360,187 - OH686_16060 0.66 -0.5
3,360,233 + OH686_16060 0.70 +0.6
3,360,233 + OH686_16060 0.70 +0.4
3,360,233 + OH686_16060 0.70 -1.8
3,360,233 + OH686_16060 0.70 -0.5
3,360,233 + OH686_16060 0.70 -0.7
3,360,233 + OH686_16060 0.70 -0.5
3,360,234 - OH686_16060 0.70 +0.6
3,360,378 + OH686_16060 0.84 -1.9
3,360,378 + OH686_16060 0.84 +0.1
3,360,378 + OH686_16060 0.84 -1.2
3,360,378 + OH686_16060 0.84 -0.4
3,360,379 - OH686_16060 0.84 +0.6
3,360,379 - OH686_16060 0.84 +0.2
3,360,379 - OH686_16060 0.84 +0.1
3,360,429 + OH686_16060 0.88 +0.3
3,360,452 + +0.3
3,360,452 + -1.3
3,360,528 + -0.4
3,360,528 + +0.9
3,360,529 - -0.6
3,360,602 - -1.4
3,360,883 + OH686_16065 0.25 -0.9
3,360,883 + OH686_16065 0.25 -1.3
3,360,884 - OH686_16065 0.25 +0.8
3,360,944 + OH686_16065 0.30 -1.7
3,360,944 + OH686_16065 0.30 -0.8
3,360,944 + OH686_16065 0.30 -0.6
3,360,944 + OH686_16065 0.30 +0.3
3,360,944 + OH686_16065 0.30 +0.3
3,360,944 + OH686_16065 0.30 -0.8
3,360,944 + OH686_16065 0.30 -0.4
3,360,944 + OH686_16065 0.30 -0.1
3,360,944 + OH686_16065 0.30 -0.9
3,360,944 + OH686_16065 0.30 -0.1
3,360,944 + OH686_16065 0.30 -0.9
3,360,944 + OH686_16065 0.30 -0.8
3,360,945 - OH686_16065 0.30 -0.3
3,360,945 - OH686_16065 0.30 -0.1
3,360,945 - OH686_16065 0.30 -0.5
3,360,945 - OH686_16065 0.30 +0.7
3,360,945 - OH686_16065 0.30 +0.6
3,360,945 - OH686_16065 0.30 -0.9
3,360,945 - OH686_16065 0.30 -0.1
3,360,945 - OH686_16065 0.30 -0.1
3,360,945 - OH686_16065 0.30 -1.4
3,360,945 - OH686_16065 0.30 -0.7
3,360,945 - OH686_16065 0.30 -0.0
3,360,945 - OH686_16065 0.30 +0.2
3,360,945 - OH686_16065 0.30 -1.6
3,360,945 - OH686_16065 0.30 -2.6
3,360,945 - OH686_16065 0.30 +0.5
3,360,945 - OH686_16065 0.30 -1.8
3,361,159 - OH686_16065 0.47 +0.4
3,361,270 - OH686_16065 0.55 +0.6
3,361,473 + OH686_16065 0.71 -0.9
3,361,473 + OH686_16065 0.71 +0.3
3,361,474 - OH686_16065 0.71 +0.5
3,361,474 - OH686_16065 0.71 +0.3
3,361,474 - OH686_16065 0.71 -0.7
3,361,474 - OH686_16065 0.71 -0.2
3,361,474 - OH686_16065 0.71 -1.2
3,361,592 + OH686_16065 0.80 +0.6
3,361,592 + OH686_16065 0.80 -0.1
3,361,592 + OH686_16065 0.80 -0.7
3,361,592 + OH686_16065 0.80 +0.9
3,361,592 + OH686_16065 0.80 -0.3
3,361,592 + OH686_16065 0.80 -0.4
3,361,592 + OH686_16065 0.80 -2.2
3,361,593 - OH686_16065 0.80 -0.3
3,361,593 - OH686_16065 0.80 -0.7
3,361,593 - OH686_16065 0.80 -1.8
3,361,593 - OH686_16065 0.80 -1.2
3,361,593 - OH686_16065 0.80 +0.9
3,361,593 - OH686_16065 0.80 -0.4
3,361,593 - OH686_16065 0.80 -0.8
3,361,593 - OH686_16065 0.80 +0.2
3,361,593 - OH686_16065 0.80 -0.6
3,361,593 - OH686_16065 0.80 -1.4
3,361,593 - OH686_16065 0.80 -3.1
3,361,593 - OH686_16065 0.80 -0.7
3,361,640 + OH686_16065 0.84 +0.4
3,361,640 + OH686_16065 0.84 -1.8
3,361,641 - OH686_16065 0.84 +1.2
3,361,641 - OH686_16065 0.84 +0.4
3,361,641 - OH686_16065 0.84 -1.1
3,361,760 + +1.5
3,361,760 + -0.7
3,361,760 + +0.5
3,361,760 + -0.4
3,361,760 + +0.1
3,361,760 + +1.4
3,361,760 + +0.9
3,361,760 + +0.9
3,361,760 + +1.0
3,361,760 + -2.0
3,361,761 - -0.9
3,361,761 - -0.8
3,361,761 - -0.0
3,361,761 - +1.1
3,361,761 - -0.6
3,361,865 - +0.3
3,361,972 + +0.1
3,361,972 + -1.7
3,361,973 - -0.5
3,361,973 - +0.1
3,361,973 - -0.4
3,361,973 - +0.1
3,361,973 - +0.4
3,361,973 - +0.4
3,361,974 + -0.4
3,361,974 + +1.2
3,361,974 + -0.3
3,361,974 + +0.5
3,361,974 + +0.3
3,361,975 - +0.3
3,361,975 - -0.1
3,361,975 - -0.1
3,361,975 - +0.0
3,361,975 - -0.4
3,361,975 - -0.9
3,362,001 + -0.8
3,362,002 - +0.3
3,362,140 + OH686_16070 0.17 -0.3
3,362,140 + OH686_16070 0.17 -0.3
3,362,140 + OH686_16070 0.17 +0.2
3,362,140 + OH686_16070 0.17 +0.2
3,362,140 + OH686_16070 0.17 +0.7
3,362,140 + OH686_16070 0.17 -0.1
3,362,140 + OH686_16070 0.17 +1.3
3,362,140 + OH686_16070 0.17 -0.8
3,362,140 + OH686_16070 0.17 -0.1
3,362,140 + OH686_16070 0.17 -0.2
3,362,140 + OH686_16070 0.17 -0.5
3,362,140 + OH686_16070 0.17 +0.8
3,362,141 - OH686_16070 0.17 +0.5
3,362,141 - OH686_16070 0.17 -0.9
3,362,141 - OH686_16070 0.17 -0.1
3,362,141 - OH686_16070 0.17 +0.7
3,362,141 - OH686_16070 0.17 -0.2
3,362,141 - OH686_16070 0.17 -0.5
3,362,141 - OH686_16070 0.17 -0.7
3,362,141 - OH686_16070 0.17 +1.1
3,362,141 - OH686_16070 0.17 -0.6
3,362,141 - OH686_16070 0.17 -3.2
3,362,141 - OH686_16070 0.17 -0.7
3,362,141 - OH686_16070 0.17 +2.1
3,362,143 + OH686_16070 0.17 +0.0
3,362,143 + OH686_16070 0.17 -0.3
3,362,143 + OH686_16070 0.17 +0.6
3,362,143 + OH686_16070 0.17 -1.7
3,362,143 + OH686_16070 0.17 -0.1
3,362,143 + OH686_16070 0.17 +0.1
3,362,143 + OH686_16070 0.17 +0.5
3,362,143 + OH686_16070 0.17 -0.2
3,362,144 - OH686_16070 0.18 +0.4
3,362,144 - OH686_16070 0.18 -0.1
3,362,144 - OH686_16070 0.18 +0.1
3,362,385 + OH686_16070 0.61 +0.5

Or see this region's nucleotide sequence