Strain Fitness in Pseudomonas sp. S08-1 around OH686_13815

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_13810 and OH686_13815 are separated by 10 nucleotidesOH686_13815 and OH686_13820 overlap by 29 nucleotidesOH686_13820 and OH686_13825 are separated by 120 nucleotidesOH686_13825 and OH686_13830 overlap by 4 nucleotidesOH686_13830 and OH686_13835 are separated by 3 nucleotides OH686_13810: OH686_13810 - Transcriptional regulator, AraC family, at 2,895,540 to 2,896,592 _13810 OH686_13815: OH686_13815 - iron donor protein CyaY, at 2,896,603 to 2,896,935 _13815 OH686_13820: OH686_13820 - hypothetical protein' product='hypothetical protein, at 2,896,907 to 2,897,110 _13820 OH686_13825: OH686_13825 - Regulator of nucleoside diphosphate kinase, at 2,897,231 to 2,897,638 _13825 OH686_13830: OH686_13830 - hypothetical protein, at 2,897,635 to 2,897,865 _13830 OH686_13835: OH686_13835 - hypothetical protein, at 2,897,869 to 2,898,054 _13835 Position (kb) 2896 2897Strain fitness (log2 ratio) -2 -1 0 1 2at 2895.603 kb on + strandat 2895.603 kb on + strandat 2895.603 kb on + strandat 2895.603 kb on + strandat 2895.603 kb on + strandat 2895.603 kb on + strandat 2895.604 kb on - strandat 2895.604 kb on - strandat 2895.604 kb on - strandat 2895.604 kb on - strandat 2895.604 kb on - strandat 2895.604 kb on - strandat 2895.604 kb on - strandat 2895.705 kb on + strand, within OH686_13810at 2895.705 kb on + strand, within OH686_13810at 2895.705 kb on + strand, within OH686_13810at 2895.705 kb on + strand, within OH686_13810at 2895.705 kb on + strand, within OH686_13810at 2895.705 kb on + strand, within OH686_13810at 2895.706 kb on - strand, within OH686_13810at 2895.706 kb on - strand, within OH686_13810at 2895.792 kb on + strand, within OH686_13810at 2895.792 kb on + strand, within OH686_13810at 2895.792 kb on + strand, within OH686_13810at 2895.793 kb on - strand, within OH686_13810at 2895.793 kb on - strand, within OH686_13810at 2895.793 kb on - strand, within OH686_13810at 2895.807 kb on + strand, within OH686_13810at 2896.390 kb on + strand, within OH686_13810at 2896.390 kb on + strand, within OH686_13810at 2896.390 kb on + strand, within OH686_13810at 2896.440 kb on + strand, within OH686_13810at 2896.440 kb on + strand, within OH686_13810at 2896.440 kb on + strand, within OH686_13810at 2896.441 kb on - strand, within OH686_13810at 2896.441 kb on - strand, within OH686_13810at 2896.441 kb on - strand, within OH686_13810at 2896.441 kb on - strand, within OH686_13810at 2896.441 kb on - strand, within OH686_13810at 2896.570 kb on + strandat 2896.570 kb on + strandat 2896.570 kb on + strandat 2896.570 kb on + strandat 2896.570 kb on + strandat 2896.570 kb on + strandat 2896.571 kb on - strandat 2896.571 kb on - strandat 2896.571 kb on - strandat 2896.571 kb on - strandat 2896.602 kb on + strandat 2896.602 kb on + strandat 2896.602 kb on + strandat 2896.603 kb on - strandat 2896.603 kb on - strandat 2896.603 kb on - strandat 2896.603 kb on - strandat 2896.603 kb on - strandat 2896.603 kb on - strandat 2896.603 kb on - strandat 2896.603 kb on - strandat 2896.603 kb on - strandat 2896.819 kb on + strand, within OH686_13815at 2896.819 kb on + strand, within OH686_13815at 2896.819 kb on + strand, within OH686_13815at 2897.019 kb on + strand, within OH686_13820at 2897.019 kb on + strand, within OH686_13820at 2897.019 kb on + strand, within OH686_13820at 2897.019 kb on + strand, within OH686_13820at 2897.020 kb on - strand, within OH686_13820at 2897.020 kb on - strand, within OH686_13820at 2897.143 kb on + strandat 2897.202 kb on + strandat 2897.202 kb on + strandat 2897.202 kb on + strandat 2897.202 kb on + strandat 2897.203 kb on - strandat 2897.441 kb on + strand, within OH686_13825at 2897.441 kb on + strand, within OH686_13825at 2897.441 kb on + strand, within OH686_13825at 2897.441 kb on + strand, within OH686_13825at 2897.442 kb on - strand, within OH686_13825at 2897.603 kb on + strandat 2897.604 kb on - strandat 2897.604 kb on - strandat 2897.604 kb on - strandat 2897.627 kb on + strandat 2897.627 kb on + strandat 2897.628 kb on - strandat 2897.688 kb on + strand, within OH686_13830at 2897.870 kb on + strandat 2897.870 kb on + strandat 2897.870 kb on + strandat 2897.870 kb on + strandat 2897.871 kb on - strandat 2897.871 kb on - strandat 2897.871 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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2,895,603 + -0.5
2,895,603 + +0.9
2,895,603 + -0.1
2,895,603 + -0.2
2,895,603 + +0.4
2,895,603 + -1.2
2,895,604 - +1.0
2,895,604 - +0.4
2,895,604 - +0.3
2,895,604 - -1.5
2,895,604 - -0.9
2,895,604 - -0.3
2,895,604 - +1.5
2,895,705 + OH686_13810 0.16 +1.2
2,895,705 + OH686_13810 0.16 +0.6
2,895,705 + OH686_13810 0.16 +1.2
2,895,705 + OH686_13810 0.16 +0.4
2,895,705 + OH686_13810 0.16 -0.5
2,895,705 + OH686_13810 0.16 +0.5
2,895,706 - OH686_13810 0.16 -0.3
2,895,706 - OH686_13810 0.16 -0.1
2,895,792 + OH686_13810 0.24 +1.8
2,895,792 + OH686_13810 0.24 +0.5
2,895,792 + OH686_13810 0.24 -0.4
2,895,793 - OH686_13810 0.24 -0.9
2,895,793 - OH686_13810 0.24 -0.7
2,895,793 - OH686_13810 0.24 -1.8
2,895,807 + OH686_13810 0.25 -0.4
2,896,390 + OH686_13810 0.81 -1.3
2,896,390 + OH686_13810 0.81 -0.4
2,896,390 + OH686_13810 0.81 +1.0
2,896,440 + OH686_13810 0.85 +0.3
2,896,440 + OH686_13810 0.85 +0.4
2,896,440 + OH686_13810 0.85 -1.2
2,896,441 - OH686_13810 0.86 -0.7
2,896,441 - OH686_13810 0.86 -0.2
2,896,441 - OH686_13810 0.86 -1.3
2,896,441 - OH686_13810 0.86 +0.4
2,896,441 - OH686_13810 0.86 -0.5
2,896,570 + -0.3
2,896,570 + +0.2
2,896,570 + +1.1
2,896,570 + -0.0
2,896,570 + +0.4
2,896,570 + -0.1
2,896,571 - -0.6
2,896,571 - -0.3
2,896,571 - +0.5
2,896,571 - -0.9
2,896,602 + -1.4
2,896,602 + +0.1
2,896,602 + +1.5
2,896,603 - +0.9
2,896,603 - -0.9
2,896,603 - -1.2
2,896,603 - -0.3
2,896,603 - -0.0
2,896,603 - +0.1
2,896,603 - -1.2
2,896,603 - -0.6
2,896,603 - -0.3
2,896,819 + OH686_13815 0.65 -1.6
2,896,819 + OH686_13815 0.65 -2.5
2,896,819 + OH686_13815 0.65 -1.2
2,897,019 + OH686_13820 0.55 +1.4
2,897,019 + OH686_13820 0.55 -0.4
2,897,019 + OH686_13820 0.55 +0.2
2,897,019 + OH686_13820 0.55 +0.7
2,897,020 - OH686_13820 0.55 +0.7
2,897,020 - OH686_13820 0.55 -0.7
2,897,143 + +0.2
2,897,202 + +0.1
2,897,202 + +0.2
2,897,202 + -1.5
2,897,202 + +0.0
2,897,203 - +0.3
2,897,441 + OH686_13825 0.51 -0.1
2,897,441 + OH686_13825 0.51 +1.1
2,897,441 + OH686_13825 0.51 +0.6
2,897,441 + OH686_13825 0.51 -0.8
2,897,442 - OH686_13825 0.52 -0.3
2,897,603 + -0.1
2,897,604 - +0.1
2,897,604 - -1.4
2,897,604 - -0.3
2,897,627 + +0.6
2,897,627 + +0.7
2,897,628 - +0.8
2,897,688 + OH686_13830 0.23 -0.6
2,897,870 + +0.1
2,897,870 + -0.2
2,897,870 + +0.5
2,897,870 + -0.5
2,897,871 - -0.0
2,897,871 - +0.1
2,897,871 - +0.9

Or see this region's nucleotide sequence