Strain Fitness in Pseudomonas sp. S08-1 around OH686_13790

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_13780 and OH686_13785 overlap by 1 nucleotidesOH686_13785 and OH686_13790 are separated by 44 nucleotidesOH686_13790 and OH686_13795 overlap by 4 nucleotidesOH686_13795 and OH686_13800 are separated by 10 nucleotides OH686_13780: OH686_13780 - 2-haloalkanoic acid dehalogenase , at 2,890,816 to 2,891,511 _13780 OH686_13785: OH686_13785 - tyrosine recombinase XerC, at 2,891,511 to 2,892,404 _13785 OH686_13790: OH686_13790 - Protein of unknown function DUF484, at 2,892,449 to 2,893,144 _13790 OH686_13795: OH686_13795 - diaminopimelate epimerase, at 2,893,141 to 2,893,971 _13795 OH686_13800: OH686_13800 - diaminopimelate decarboxylase, at 2,893,982 to 2,895,229 _13800 Position (kb) 2892 2893 2894Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2891.554 kb on + strandat 2891.555 kb on - strandat 2891.590 kb on + strandat 2891.590 kb on + strandat 2891.590 kb on + strandat 2891.590 kb on + strandat 2891.590 kb on + strandat 2891.590 kb on + strandat 2891.590 kb on + strandat 2891.590 kb on + strandat 2891.590 kb on + strandat 2891.590 kb on + strandat 2891.590 kb on + strandat 2891.590 kb on + strandat 2891.590 kb on + strandat 2891.590 kb on + strandat 2891.590 kb on + strandat 2891.590 kb on + strandat 2891.591 kb on - strandat 2891.591 kb on - strandat 2891.591 kb on - strandat 2891.591 kb on - strandat 2891.591 kb on - strandat 2891.591 kb on - strandat 2891.591 kb on - strandat 2891.591 kb on - strandat 2891.591 kb on - strandat 2891.591 kb on - strandat 2891.591 kb on - strandat 2891.591 kb on - strandat 2891.591 kb on - strandat 2891.591 kb on - strandat 2891.591 kb on - strandat 2891.591 kb on - strandat 2891.591 kb on - strandat 2891.591 kb on - strandat 2891.591 kb on - strandat 2891.591 kb on - strandat 2891.643 kb on + strand, within OH686_13785at 2891.643 kb on + strand, within OH686_13785at 2891.643 kb on + strand, within OH686_13785at 2891.643 kb on + strand, within OH686_13785at 2891.644 kb on - strand, within OH686_13785at 2891.644 kb on - strand, within OH686_13785at 2891.644 kb on - strand, within OH686_13785at 2891.644 kb on - strand, within OH686_13785at 2891.664 kb on + strand, within OH686_13785at 2891.664 kb on + strand, within OH686_13785at 2891.664 kb on + strand, within OH686_13785at 2891.664 kb on + strand, within OH686_13785at 2891.664 kb on + strand, within OH686_13785at 2891.664 kb on + strand, within OH686_13785at 2891.664 kb on + strand, within OH686_13785at 2891.664 kb on + strand, within OH686_13785at 2891.664 kb on + strand, within OH686_13785at 2891.664 kb on + strand, within OH686_13785at 2891.665 kb on - strand, within OH686_13785at 2891.665 kb on - strand, within OH686_13785at 2891.665 kb on - strand, within OH686_13785at 2891.665 kb on - strand, within OH686_13785at 2891.665 kb on - strand, within OH686_13785at 2891.665 kb on - strand, within OH686_13785at 2891.665 kb on - strand, within OH686_13785at 2891.665 kb on - strand, within OH686_13785at 2891.665 kb on - strand, within OH686_13785at 2891.665 kb on - strand, within OH686_13785at 2891.665 kb on - strand, within OH686_13785at 2891.665 kb on - strand, within OH686_13785at 2891.665 kb on - strand, within OH686_13785at 2891.665 kb on - strand, within OH686_13785at 2891.665 kb on - strand, within OH686_13785at 2891.665 kb on - strand, within OH686_13785at 2891.665 kb on - strand, within OH686_13785at 2891.665 kb on - strand, within OH686_13785at 2891.983 kb on + strand, within OH686_13785at 2891.983 kb on + strand, within OH686_13785at 2891.983 kb on + strand, within OH686_13785at 2891.983 kb on + strand, within OH686_13785at 2891.983 kb on + strand, within OH686_13785at 2891.983 kb on + strand, within OH686_13785at 2891.983 kb on + strand, within OH686_13785at 2891.983 kb on + strand, within OH686_13785at 2891.983 kb on + strand, within OH686_13785at 2891.983 kb on + strand, within OH686_13785at 2891.984 kb on - strand, within OH686_13785at 2891.984 kb on - strand, within OH686_13785at 2891.984 kb on - strand, within OH686_13785at 2891.984 kb on - strand, within OH686_13785at 2891.984 kb on - strand, within OH686_13785at 2891.984 kb on - strand, within OH686_13785at 2891.984 kb on - strand, within OH686_13785at 2892.157 kb on + strand, within OH686_13785at 2892.157 kb on + strand, within OH686_13785at 2892.157 kb on + strand, within OH686_13785at 2892.157 kb on + strand, within OH686_13785at 2892.158 kb on - strand, within OH686_13785at 2892.158 kb on - strand, within OH686_13785at 2892.158 kb on - strand, within OH686_13785at 2892.163 kb on + strand, within OH686_13785at 2892.163 kb on + strand, within OH686_13785at 2892.163 kb on + strand, within OH686_13785at 2892.163 kb on + strand, within OH686_13785at 2892.163 kb on + strand, within OH686_13785at 2892.163 kb on + strand, within OH686_13785at 2892.163 kb on + strand, within OH686_13785at 2892.164 kb on - strand, within OH686_13785at 2892.164 kb on - strand, within OH686_13785at 2892.164 kb on - strand, within OH686_13785at 2892.164 kb on - strand, within OH686_13785at 2892.164 kb on - strand, within OH686_13785at 2892.164 kb on - strand, within OH686_13785at 2892.164 kb on - strand, within OH686_13785at 2892.164 kb on - strand, within OH686_13785at 2892.164 kb on - strand, within OH686_13785at 2892.382 kb on + strandat 2892.382 kb on + strandat 2892.382 kb on + strandat 2892.383 kb on - strandat 2892.513 kb on + strandat 2892.514 kb on - strandat 2892.546 kb on + strand, within OH686_13790at 2892.546 kb on + strand, within OH686_13790at 2892.546 kb on + strand, within OH686_13790at 2892.546 kb on + strand, within OH686_13790at 2892.546 kb on + strand, within OH686_13790at 2892.546 kb on + strand, within OH686_13790at 2892.546 kb on + strand, within OH686_13790at 2892.547 kb on - strand, within OH686_13790at 2892.547 kb on - strand, within OH686_13790at 2892.547 kb on - strand, within OH686_13790at 2892.547 kb on - strand, within OH686_13790at 2892.547 kb on - strand, within OH686_13790at 2892.547 kb on - strand, within OH686_13790at 2892.547 kb on - strand, within OH686_13790at 2892.547 kb on - strand, within OH686_13790at 2892.547 kb on - strand, within OH686_13790at 2892.579 kb on - strand, within OH686_13790at 2892.579 kb on - strand, within OH686_13790at 2892.579 kb on - strand, within OH686_13790at 2892.597 kb on + strand, within OH686_13790at 2892.597 kb on + strand, within OH686_13790at 2892.598 kb on - strand, within OH686_13790at 2892.598 kb on - strand, within OH686_13790at 2892.598 kb on - strand, within OH686_13790at 2892.598 kb on - strand, within OH686_13790at 2892.598 kb on - strand, within OH686_13790at 2893.092 kb on + strandat 2893.093 kb on - strandat 2893.144 kb on + strandat 2893.144 kb on + strandat 2893.144 kb on + strandat 2893.145 kb on - strandat 2893.145 kb on - strandat 2893.145 kb on - strandat 2893.145 kb on - strandat 2893.966 kb on + strandat 2893.966 kb on + strandat 2893.966 kb on + strandat 2893.966 kb on + strandat 2893.966 kb on + strandat 2893.966 kb on + strandat 2893.966 kb on + strandat 2893.966 kb on + strandat 2893.967 kb on - strandat 2893.967 kb on - strandat 2893.967 kb on - strandat 2894.097 kb on + strandat 2894.098 kb on - strandat 2894.098 kb on - strandat 2894.098 kb on - strandat 2894.098 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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2,891,554 + -0.5
2,891,555 - +0.8
2,891,590 + -2.1
2,891,590 + +0.1
2,891,590 + +0.8
2,891,590 + +0.0
2,891,590 + +0.6
2,891,590 + +0.1
2,891,590 + +0.0
2,891,590 + -1.5
2,891,590 + -0.2
2,891,590 + +0.0
2,891,590 + -1.3
2,891,590 + -1.2
2,891,590 + -0.2
2,891,590 + -1.1
2,891,590 + -0.6
2,891,590 + +0.8
2,891,591 - +0.1
2,891,591 - -1.6
2,891,591 - -1.3
2,891,591 - -1.0
2,891,591 - -1.6
2,891,591 - -0.3
2,891,591 - +1.8
2,891,591 - +0.5
2,891,591 - -0.2
2,891,591 - -0.8
2,891,591 - -0.4
2,891,591 - -0.8
2,891,591 - -1.3
2,891,591 - -2.3
2,891,591 - -1.4
2,891,591 - -1.5
2,891,591 - -0.7
2,891,591 - -0.4
2,891,591 - -0.6
2,891,591 - -1.9
2,891,643 + OH686_13785 0.15 +0.5
2,891,643 + OH686_13785 0.15 -0.2
2,891,643 + OH686_13785 0.15 +0.1
2,891,643 + OH686_13785 0.15 +1.5
2,891,644 - OH686_13785 0.15 -2.2
2,891,644 - OH686_13785 0.15 -0.3
2,891,644 - OH686_13785 0.15 -0.1
2,891,644 - OH686_13785 0.15 +0.8
2,891,664 + OH686_13785 0.17 -1.8
2,891,664 + OH686_13785 0.17 -0.1
2,891,664 + OH686_13785 0.17 -1.9
2,891,664 + OH686_13785 0.17 -0.5
2,891,664 + OH686_13785 0.17 -0.9
2,891,664 + OH686_13785 0.17 -1.6
2,891,664 + OH686_13785 0.17 -0.8
2,891,664 + OH686_13785 0.17 -0.5
2,891,664 + OH686_13785 0.17 +0.1
2,891,664 + OH686_13785 0.17 +0.2
2,891,665 - OH686_13785 0.17 -1.1
2,891,665 - OH686_13785 0.17 -0.8
2,891,665 - OH686_13785 0.17 -0.5
2,891,665 - OH686_13785 0.17 +0.8
2,891,665 - OH686_13785 0.17 -0.1
2,891,665 - OH686_13785 0.17 -0.2
2,891,665 - OH686_13785 0.17 -1.2
2,891,665 - OH686_13785 0.17 -0.4
2,891,665 - OH686_13785 0.17 +0.7
2,891,665 - OH686_13785 0.17 +0.3
2,891,665 - OH686_13785 0.17 +0.1
2,891,665 - OH686_13785 0.17 -0.4
2,891,665 - OH686_13785 0.17 -0.5
2,891,665 - OH686_13785 0.17 -0.3
2,891,665 - OH686_13785 0.17 +0.7
2,891,665 - OH686_13785 0.17 -0.8
2,891,665 - OH686_13785 0.17 +2.1
2,891,665 - OH686_13785 0.17 -0.5
2,891,983 + OH686_13785 0.53 -0.3
2,891,983 + OH686_13785 0.53 -0.8
2,891,983 + OH686_13785 0.53 -1.7
2,891,983 + OH686_13785 0.53 -0.6
2,891,983 + OH686_13785 0.53 +0.8
2,891,983 + OH686_13785 0.53 -0.8
2,891,983 + OH686_13785 0.53 +0.7
2,891,983 + OH686_13785 0.53 -0.9
2,891,983 + OH686_13785 0.53 +0.0
2,891,983 + OH686_13785 0.53 -0.4
2,891,984 - OH686_13785 0.53 -1.6
2,891,984 - OH686_13785 0.53 +0.3
2,891,984 - OH686_13785 0.53 -0.2
2,891,984 - OH686_13785 0.53 +1.1
2,891,984 - OH686_13785 0.53 -1.6
2,891,984 - OH686_13785 0.53 +0.4
2,891,984 - OH686_13785 0.53 +0.4
2,892,157 + OH686_13785 0.72 +0.8
2,892,157 + OH686_13785 0.72 +0.1
2,892,157 + OH686_13785 0.72 +0.4
2,892,157 + OH686_13785 0.72 +0.0
2,892,158 - OH686_13785 0.72 -0.2
2,892,158 - OH686_13785 0.72 +1.2
2,892,158 - OH686_13785 0.72 -1.0
2,892,163 + OH686_13785 0.73 +0.7
2,892,163 + OH686_13785 0.73 -0.1
2,892,163 + OH686_13785 0.73 +0.5
2,892,163 + OH686_13785 0.73 -1.1
2,892,163 + OH686_13785 0.73 +0.7
2,892,163 + OH686_13785 0.73 -0.5
2,892,163 + OH686_13785 0.73 -0.4
2,892,164 - OH686_13785 0.73 -1.0
2,892,164 - OH686_13785 0.73 -0.4
2,892,164 - OH686_13785 0.73 -1.3
2,892,164 - OH686_13785 0.73 +0.8
2,892,164 - OH686_13785 0.73 -0.1
2,892,164 - OH686_13785 0.73 +0.6
2,892,164 - OH686_13785 0.73 -0.0
2,892,164 - OH686_13785 0.73 +0.1
2,892,164 - OH686_13785 0.73 -1.1
2,892,382 + -0.2
2,892,382 + -1.2
2,892,382 + +0.6
2,892,383 - -0.4
2,892,513 + -1.0
2,892,514 - -1.4
2,892,546 + OH686_13790 0.14 -2.0
2,892,546 + OH686_13790 0.14 -0.4
2,892,546 + OH686_13790 0.14 -1.8
2,892,546 + OH686_13790 0.14 -1.4
2,892,546 + OH686_13790 0.14 -0.9
2,892,546 + OH686_13790 0.14 +0.2
2,892,546 + OH686_13790 0.14 -0.6
2,892,547 - OH686_13790 0.14 -0.5
2,892,547 - OH686_13790 0.14 -0.8
2,892,547 - OH686_13790 0.14 -1.8
2,892,547 - OH686_13790 0.14 -0.8
2,892,547 - OH686_13790 0.14 +0.0
2,892,547 - OH686_13790 0.14 +1.8
2,892,547 - OH686_13790 0.14 -1.0
2,892,547 - OH686_13790 0.14 -2.0
2,892,547 - OH686_13790 0.14 -0.5
2,892,579 - OH686_13790 0.19 -1.0
2,892,579 - OH686_13790 0.19 -0.5
2,892,579 - OH686_13790 0.19 -0.8
2,892,597 + OH686_13790 0.21 -0.5
2,892,597 + OH686_13790 0.21 -1.0
2,892,598 - OH686_13790 0.21 +1.5
2,892,598 - OH686_13790 0.21 +0.8
2,892,598 - OH686_13790 0.21 +0.8
2,892,598 - OH686_13790 0.21 -0.2
2,892,598 - OH686_13790 0.21 -0.2
2,893,092 + -0.8
2,893,093 - -0.8
2,893,144 + -2.0
2,893,144 + -0.8
2,893,144 + -3.2
2,893,145 - +0.6
2,893,145 - +0.6
2,893,145 - +0.2
2,893,145 - -0.2
2,893,966 + -0.8
2,893,966 + -0.1
2,893,966 + -0.2
2,893,966 + -0.3
2,893,966 + -0.3
2,893,966 + -0.8
2,893,966 + +0.2
2,893,966 + -1.1
2,893,967 - +0.5
2,893,967 - -0.1
2,893,967 - -0.5
2,894,097 + -0.2
2,894,098 - -0.2
2,894,098 - -0.8
2,894,098 - -0.2
2,894,098 - -0.2

Or see this region's nucleotide sequence