Strain Fitness in Pseudomonas sp. S08-1 around OH686_10495

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_10490 and OH686_10495 are separated by 5 nucleotidesOH686_10495 and OH686_10500 are separated by 95 nucleotides OH686_10490: OH686_10490 - Predicted signal-transduction protein containing cAMP-binding and CBS domains, at 2,151,799 to 2,153,727 _10490 OH686_10495: OH686_10495 - DNA polymerase III epsilon subunit , at 2,153,733 to 2,154,419 _10495 OH686_10500: OH686_10500 - putative iron-regulated membrane protein, at 2,154,515 to 2,155,642 _10500 Position (kb) 2153 2154 2155Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2153.200 kb on + strand, within OH686_10490at 2153.200 kb on + strand, within OH686_10490at 2153.200 kb on + strand, within OH686_10490at 2153.200 kb on + strand, within OH686_10490at 2153.200 kb on + strand, within OH686_10490at 2153.200 kb on + strand, within OH686_10490at 2153.200 kb on + strand, within OH686_10490at 2153.201 kb on - strand, within OH686_10490at 2153.201 kb on - strand, within OH686_10490at 2153.201 kb on - strand, within OH686_10490at 2153.201 kb on - strand, within OH686_10490at 2153.537 kb on - strandat 2153.537 kb on - strandat 2153.537 kb on - strandat 2153.548 kb on + strandat 2153.548 kb on + strandat 2153.548 kb on + strandat 2153.548 kb on + strandat 2153.549 kb on - strandat 2153.549 kb on - strandat 2153.549 kb on - strandat 2153.723 kb on + strandat 2153.723 kb on + strandat 2153.723 kb on + strandat 2153.723 kb on + strandat 2153.723 kb on + strandat 2153.724 kb on - strandat 2153.724 kb on - strandat 2153.724 kb on - strandat 2153.724 kb on - strandat 2153.724 kb on - strandat 2153.724 kb on - strandat 2153.724 kb on - strandat 2153.724 kb on - strandat 2153.987 kb on + strand, within OH686_10495at 2154.420 kb on + strandat 2154.421 kb on - strandat 2154.421 kb on - strandat 2154.421 kb on - strandat 2154.478 kb on + strandat 2154.478 kb on + strandat 2154.479 kb on - strandat 2154.479 kb on - strandat 2154.479 kb on - strandat 2154.479 kb on - strandat 2154.479 kb on - strandat 2154.479 kb on - strandat 2154.479 kb on - strandat 2154.752 kb on + strand, within OH686_10500at 2154.752 kb on + strand, within OH686_10500at 2154.752 kb on + strand, within OH686_10500at 2154.752 kb on + strand, within OH686_10500at 2154.753 kb on - strand, within OH686_10500at 2154.753 kb on - strand, within OH686_10500at 2154.753 kb on - strand, within OH686_10500at 2154.753 kb on - strand, within OH686_10500at 2154.753 kb on - strand, within OH686_10500at 2154.753 kb on - strand, within OH686_10500at 2154.753 kb on - strand, within OH686_10500at 2154.793 kb on + strand, within OH686_10500at 2154.793 kb on + strand, within OH686_10500at 2154.793 kb on + strand, within OH686_10500at 2154.793 kb on + strand, within OH686_10500at 2154.793 kb on + strand, within OH686_10500at 2154.793 kb on + strand, within OH686_10500at 2154.793 kb on + strand, within OH686_10500at 2154.793 kb on + strand, within OH686_10500at 2154.793 kb on + strand, within OH686_10500at 2154.793 kb on + strand, within OH686_10500at 2154.794 kb on - strand, within OH686_10500at 2154.794 kb on - strand, within OH686_10500at 2154.794 kb on - strand, within OH686_10500at 2154.794 kb on - strand, within OH686_10500at 2154.794 kb on - strand, within OH686_10500at 2154.794 kb on - strand, within OH686_10500at 2154.794 kb on - strand, within OH686_10500at 2154.794 kb on - strand, within OH686_10500at 2154.794 kb on - strand, within OH686_10500at 2154.794 kb on - strand, within OH686_10500at 2154.856 kb on + strand, within OH686_10500at 2154.856 kb on + strand, within OH686_10500at 2154.857 kb on - strand, within OH686_10500at 2154.857 kb on - strand, within OH686_10500at 2154.967 kb on + strand, within OH686_10500at 2154.967 kb on + strand, within OH686_10500at 2154.968 kb on - strand, within OH686_10500at 2155.013 kb on + strand, within OH686_10500at 2155.013 kb on + strand, within OH686_10500at 2155.013 kb on + strand, within OH686_10500at 2155.013 kb on + strand, within OH686_10500at 2155.014 kb on - strand, within OH686_10500at 2155.014 kb on - strand, within OH686_10500at 2155.014 kb on - strand, within OH686_10500at 2155.025 kb on - strand, within OH686_10500at 2155.352 kb on + strand, within OH686_10500at 2155.353 kb on - strand, within OH686_10500at 2155.353 kb on - strand, within OH686_10500at 2155.353 kb on - strand, within OH686_10500at 2155.353 kb on - strand, within OH686_10500at 2155.353 kb on - strand, within OH686_10500

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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2,153,200 + OH686_10490 0.73 -0.3
2,153,200 + OH686_10490 0.73 -0.3
2,153,200 + OH686_10490 0.73 -0.0
2,153,200 + OH686_10490 0.73 -0.0
2,153,200 + OH686_10490 0.73 -0.1
2,153,200 + OH686_10490 0.73 -0.1
2,153,200 + OH686_10490 0.73 +0.1
2,153,201 - OH686_10490 0.73 +0.6
2,153,201 - OH686_10490 0.73 -0.7
2,153,201 - OH686_10490 0.73 -0.7
2,153,201 - OH686_10490 0.73 -1.6
2,153,537 - +1.0
2,153,537 - -1.0
2,153,537 - +0.0
2,153,548 + +0.1
2,153,548 + +0.0
2,153,548 + -0.6
2,153,548 + -0.6
2,153,549 - +0.2
2,153,549 - -0.2
2,153,549 - -0.0
2,153,723 + -0.3
2,153,723 + +1.1
2,153,723 + -0.0
2,153,723 + -0.1
2,153,723 + -0.1
2,153,724 - +1.2
2,153,724 - +0.8
2,153,724 - -0.7
2,153,724 - -0.5
2,153,724 - +0.5
2,153,724 - -0.5
2,153,724 - +0.3
2,153,724 - -2.9
2,153,987 + OH686_10495 0.37 -0.3
2,154,420 + +0.3
2,154,421 - +0.0
2,154,421 - -0.1
2,154,421 - +0.2
2,154,478 + -0.6
2,154,478 + +0.1
2,154,479 - -0.7
2,154,479 - -0.7
2,154,479 - -0.0
2,154,479 - +0.1
2,154,479 - +0.4
2,154,479 - +0.9
2,154,479 - -0.1
2,154,752 + OH686_10500 0.21 +1.1
2,154,752 + OH686_10500 0.21 +0.4
2,154,752 + OH686_10500 0.21 -0.2
2,154,752 + OH686_10500 0.21 +0.1
2,154,753 - OH686_10500 0.21 +0.0
2,154,753 - OH686_10500 0.21 -0.9
2,154,753 - OH686_10500 0.21 +0.3
2,154,753 - OH686_10500 0.21 -0.4
2,154,753 - OH686_10500 0.21 -0.6
2,154,753 - OH686_10500 0.21 -0.1
2,154,753 - OH686_10500 0.21 +0.6
2,154,793 + OH686_10500 0.25 -0.5
2,154,793 + OH686_10500 0.25 +0.0
2,154,793 + OH686_10500 0.25 +0.7
2,154,793 + OH686_10500 0.25 +0.1
2,154,793 + OH686_10500 0.25 -0.5
2,154,793 + OH686_10500 0.25 +0.2
2,154,793 + OH686_10500 0.25 -0.1
2,154,793 + OH686_10500 0.25 -0.1
2,154,793 + OH686_10500 0.25 -0.0
2,154,793 + OH686_10500 0.25 -1.1
2,154,794 - OH686_10500 0.25 -0.0
2,154,794 - OH686_10500 0.25 -0.3
2,154,794 - OH686_10500 0.25 +0.3
2,154,794 - OH686_10500 0.25 -0.6
2,154,794 - OH686_10500 0.25 -0.3
2,154,794 - OH686_10500 0.25 +0.3
2,154,794 - OH686_10500 0.25 -0.1
2,154,794 - OH686_10500 0.25 -0.2
2,154,794 - OH686_10500 0.25 -0.9
2,154,794 - OH686_10500 0.25 +1.3
2,154,856 + OH686_10500 0.30 -1.8
2,154,856 + OH686_10500 0.30 -0.1
2,154,857 - OH686_10500 0.30 +0.1
2,154,857 - OH686_10500 0.30 -0.1
2,154,967 + OH686_10500 0.40 +1.4
2,154,967 + OH686_10500 0.40 -0.1
2,154,968 - OH686_10500 0.40 -0.2
2,155,013 + OH686_10500 0.44 -0.3
2,155,013 + OH686_10500 0.44 -0.6
2,155,013 + OH686_10500 0.44 -1.3
2,155,013 + OH686_10500 0.44 +0.2
2,155,014 - OH686_10500 0.44 +0.1
2,155,014 - OH686_10500 0.44 +0.1
2,155,014 - OH686_10500 0.44 +0.1
2,155,025 - OH686_10500 0.45 +0.1
2,155,352 + OH686_10500 0.74 -3.3
2,155,353 - OH686_10500 0.74 +0.7
2,155,353 - OH686_10500 0.74 -0.5
2,155,353 - OH686_10500 0.74 +1.9
2,155,353 - OH686_10500 0.74 +0.1
2,155,353 - OH686_10500 0.74 -0.9

Or see this region's nucleotide sequence