Strain Fitness in Pseudomonas sp. S08-1 around OH686_10030

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_10025 and OH686_10030 are separated by 53 nucleotidesOH686_10030 and OH686_10035 overlap by 64 nucleotidesOH686_10035 and OH686_10040 overlap by 4 nucleotides OH686_10025: OH686_10025 - Type IV pilus biogenesis protein PilQ, at 2,057,627 to 2,059,753 _10025 OH686_10030: OH686_10030 - CDS, at 2,059,807 to 2,059,935 _10030 OH686_10035: OH686_10035 - type IV pilus assembly protein PilP, at 2,059,872 to 2,060,333 _10035 OH686_10040: OH686_10040 - Type IV pilus biogenesis protein PilO, at 2,060,330 to 2,060,959 _10040 Position (kb) 2059 2060Strain fitness (log2 ratio) -2 -1 0 1at 2059.008 kb on - strand, within OH686_10025at 2059.008 kb on - strand, within OH686_10025at 2059.035 kb on + strand, within OH686_10025at 2059.134 kb on - strand, within OH686_10025at 2059.207 kb on + strand, within OH686_10025at 2059.207 kb on + strand, within OH686_10025at 2059.249 kb on + strand, within OH686_10025at 2059.315 kb on + strand, within OH686_10025at 2059.315 kb on + strand, within OH686_10025at 2059.324 kb on + strand, within OH686_10025at 2059.324 kb on + strand, within OH686_10025at 2059.325 kb on - strand, within OH686_10025at 2059.325 kb on - strand, within OH686_10025at 2059.354 kb on + strand, within OH686_10025at 2059.420 kb on + strand, within OH686_10025at 2059.447 kb on + strand, within OH686_10025at 2059.462 kb on + strand, within OH686_10025at 2059.462 kb on + strand, within OH686_10025at 2059.463 kb on - strand, within OH686_10025at 2059.463 kb on - strand, within OH686_10025at 2059.463 kb on - strand, within OH686_10025at 2059.463 kb on - strand, within OH686_10025at 2059.492 kb on + strand, within OH686_10025at 2059.537 kb on + strand, within OH686_10025at 2059.537 kb on + strand, within OH686_10025at 2059.538 kb on - strand, within OH686_10025at 2059.588 kb on + strandat 2059.588 kb on + strandat 2059.589 kb on - strandat 2059.589 kb on - strandat 2059.589 kb on - strandat 2059.589 kb on - strandat 2059.589 kb on - strandat 2059.589 kb on - strandat 2059.609 kb on + strandat 2059.609 kb on + strandat 2059.609 kb on + strandat 2059.609 kb on + strandat 2059.609 kb on + strandat 2059.609 kb on + strandat 2059.610 kb on - strandat 2059.610 kb on - strandat 2059.610 kb on - strandat 2059.610 kb on - strandat 2059.610 kb on - strandat 2059.677 kb on - strandat 2059.677 kb on - strandat 2059.677 kb on - strandat 2059.748 kb on - strandat 2059.755 kb on - strandat 2059.780 kb on - strandat 2059.827 kb on + strand, within OH686_10030at 2059.828 kb on - strand, within OH686_10030at 2059.830 kb on + strand, within OH686_10030at 2059.830 kb on + strand, within OH686_10030at 2059.830 kb on + strand, within OH686_10030at 2060.037 kb on - strand, within OH686_10035at 2060.081 kb on + strand, within OH686_10035at 2060.081 kb on + strand, within OH686_10035at 2060.081 kb on + strand, within OH686_10035at 2060.082 kb on - strand, within OH686_10035at 2060.124 kb on - strand, within OH686_10035at 2060.168 kb on + strand, within OH686_10035at 2060.168 kb on + strand, within OH686_10035at 2060.168 kb on + strand, within OH686_10035at 2060.168 kb on + strand, within OH686_10035at 2060.169 kb on - strand, within OH686_10035at 2060.179 kb on + strand, within OH686_10035at 2060.179 kb on + strand, within OH686_10035at 2060.179 kb on + strand, within OH686_10035at 2060.179 kb on + strand, within OH686_10035at 2060.229 kb on + strand, within OH686_10035at 2060.229 kb on + strand, within OH686_10035at 2060.229 kb on + strand, within OH686_10035at 2060.230 kb on - strand, within OH686_10035at 2060.241 kb on - strand, within OH686_10035at 2060.274 kb on + strand, within OH686_10035at 2060.328 kb on - strandat 2060.356 kb on - strandat 2060.356 kb on - strandat 2060.359 kb on + strandat 2060.362 kb on - strandat 2060.465 kb on - strand, within OH686_10040at 2060.515 kb on + strand, within OH686_10040at 2060.522 kb on + strand, within OH686_10040at 2060.609 kb on - strand, within OH686_10040at 2060.706 kb on + strand, within OH686_10040at 2060.707 kb on - strand, within OH686_10040at 2060.862 kb on - strand, within OH686_10040at 2060.864 kb on + strand, within OH686_10040at 2060.865 kb on - strand, within OH686_10040at 2060.892 kb on - strand, within OH686_10040at 2060.929 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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2,059,008 - OH686_10025 0.65 -0.2
2,059,008 - OH686_10025 0.65 +0.3
2,059,035 + OH686_10025 0.66 -0.9
2,059,134 - OH686_10025 0.71 +0.3
2,059,207 + OH686_10025 0.74 -1.8
2,059,207 + OH686_10025 0.74 -2.1
2,059,249 + OH686_10025 0.76 -1.5
2,059,315 + OH686_10025 0.79 -0.6
2,059,315 + OH686_10025 0.79 -0.7
2,059,324 + OH686_10025 0.80 -1.1
2,059,324 + OH686_10025 0.80 -1.0
2,059,325 - OH686_10025 0.80 +0.6
2,059,325 - OH686_10025 0.80 -0.4
2,059,354 + OH686_10025 0.81 -1.6
2,059,420 + OH686_10025 0.84 -1.1
2,059,447 + OH686_10025 0.86 -2.3
2,059,462 + OH686_10025 0.86 -1.1
2,059,462 + OH686_10025 0.86 -1.3
2,059,463 - OH686_10025 0.86 -0.4
2,059,463 - OH686_10025 0.86 +0.7
2,059,463 - OH686_10025 0.86 -0.2
2,059,463 - OH686_10025 0.86 +0.5
2,059,492 + OH686_10025 0.88 -2.6
2,059,537 + OH686_10025 0.90 -2.3
2,059,537 + OH686_10025 0.90 -0.7
2,059,538 - OH686_10025 0.90 +0.7
2,059,588 + -0.2
2,059,588 + -1.0
2,059,589 - +0.1
2,059,589 - +0.5
2,059,589 - -0.6
2,059,589 - -0.2
2,059,589 - -0.4
2,059,589 - -0.6
2,059,609 + -1.3
2,059,609 + -1.1
2,059,609 + -2.0
2,059,609 + -0.1
2,059,609 + -2.3
2,059,609 + -1.9
2,059,610 - +0.5
2,059,610 - -0.1
2,059,610 - +0.4
2,059,610 - -0.6
2,059,610 - -0.6
2,059,677 - +0.3
2,059,677 - +0.3
2,059,677 - +0.4
2,059,748 - -0.0
2,059,755 - +0.5
2,059,780 - -0.8
2,059,827 + OH686_10030 0.16 -0.7
2,059,828 - OH686_10030 0.16 -0.7
2,059,830 + OH686_10030 0.18 -0.0
2,059,830 + OH686_10030 0.18 -0.2
2,059,830 + OH686_10030 0.18 -0.1
2,060,037 - OH686_10035 0.36 -0.1
2,060,081 + OH686_10035 0.45 +0.6
2,060,081 + OH686_10035 0.45 +0.2
2,060,081 + OH686_10035 0.45 +0.4
2,060,082 - OH686_10035 0.45 -0.2
2,060,124 - OH686_10035 0.55 +0.5
2,060,168 + OH686_10035 0.64 -0.3
2,060,168 + OH686_10035 0.64 +0.2
2,060,168 + OH686_10035 0.64 -0.5
2,060,168 + OH686_10035 0.64 -0.9
2,060,169 - OH686_10035 0.64 -0.4
2,060,179 + OH686_10035 0.66 -0.2
2,060,179 + OH686_10035 0.66 -0.1
2,060,179 + OH686_10035 0.66 -0.1
2,060,179 + OH686_10035 0.66 -0.2
2,060,229 + OH686_10035 0.77 -0.0
2,060,229 + OH686_10035 0.77 -0.2
2,060,229 + OH686_10035 0.77 -0.7
2,060,230 - OH686_10035 0.77 -0.1
2,060,241 - OH686_10035 0.80 -0.5
2,060,274 + OH686_10035 0.87 -0.0
2,060,328 - +0.3
2,060,356 - -1.3
2,060,356 - -0.4
2,060,359 + -0.6
2,060,362 - +0.8
2,060,465 - OH686_10040 0.21 +0.1
2,060,515 + OH686_10040 0.29 +0.4
2,060,522 + OH686_10040 0.30 +0.5
2,060,609 - OH686_10040 0.44 -0.6
2,060,706 + OH686_10040 0.60 +0.3
2,060,707 - OH686_10040 0.60 +0.9
2,060,862 - OH686_10040 0.84 -1.1
2,060,864 + OH686_10040 0.85 +0.0
2,060,865 - OH686_10040 0.85 -0.5
2,060,892 - OH686_10040 0.89 -1.1
2,060,929 + -0.3

Or see this region's nucleotide sequence