Experiment: D-Glucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OH686_10025 and OH686_10030 are separated by 53 nucleotides OH686_10030 and OH686_10035 overlap by 64 nucleotides OH686_10035 and OH686_10040 overlap by 4 nucleotides
OH686_10025: OH686_10025 - Type IV pilus biogenesis protein PilQ, at 2,057,627 to 2,059,753
_10025
OH686_10030: OH686_10030 - CDS, at 2,059,807 to 2,059,935
_10030
OH686_10035: OH686_10035 - type IV pilus assembly protein PilP, at 2,059,872 to 2,060,333
_10035
OH686_10040: OH686_10040 - Type IV pilus biogenesis protein PilO, at 2,060,330 to 2,060,959
_10040
Position (kb)
2059
2060 Strain fitness (log2 ratio)
-2
-1
0
1 at 2059.008 kb on - strand, within OH686_10025 at 2059.008 kb on - strand, within OH686_10025 at 2059.035 kb on + strand, within OH686_10025 at 2059.134 kb on - strand, within OH686_10025 at 2059.207 kb on + strand, within OH686_10025 at 2059.207 kb on + strand, within OH686_10025 at 2059.249 kb on + strand, within OH686_10025 at 2059.315 kb on + strand, within OH686_10025 at 2059.315 kb on + strand, within OH686_10025 at 2059.324 kb on + strand, within OH686_10025 at 2059.324 kb on + strand, within OH686_10025 at 2059.325 kb on - strand, within OH686_10025 at 2059.325 kb on - strand, within OH686_10025 at 2059.354 kb on + strand, within OH686_10025 at 2059.420 kb on + strand, within OH686_10025 at 2059.447 kb on + strand, within OH686_10025 at 2059.462 kb on + strand, within OH686_10025 at 2059.462 kb on + strand, within OH686_10025 at 2059.463 kb on - strand, within OH686_10025 at 2059.463 kb on - strand, within OH686_10025 at 2059.463 kb on - strand, within OH686_10025 at 2059.463 kb on - strand, within OH686_10025 at 2059.492 kb on + strand, within OH686_10025 at 2059.537 kb on + strand, within OH686_10025 at 2059.537 kb on + strand, within OH686_10025 at 2059.538 kb on - strand, within OH686_10025 at 2059.588 kb on + strand at 2059.588 kb on + strand at 2059.589 kb on - strand at 2059.589 kb on - strand at 2059.589 kb on - strand at 2059.589 kb on - strand at 2059.589 kb on - strand at 2059.589 kb on - strand at 2059.609 kb on + strand at 2059.609 kb on + strand at 2059.609 kb on + strand at 2059.609 kb on + strand at 2059.609 kb on + strand at 2059.609 kb on + strand at 2059.610 kb on - strand at 2059.610 kb on - strand at 2059.610 kb on - strand at 2059.610 kb on - strand at 2059.610 kb on - strand at 2059.677 kb on - strand at 2059.677 kb on - strand at 2059.677 kb on - strand at 2059.748 kb on - strand at 2059.755 kb on - strand at 2059.780 kb on - strand at 2059.827 kb on + strand, within OH686_10030 at 2059.828 kb on - strand, within OH686_10030 at 2059.830 kb on + strand, within OH686_10030 at 2059.830 kb on + strand, within OH686_10030 at 2059.830 kb on + strand, within OH686_10030 at 2060.037 kb on - strand, within OH686_10035 at 2060.081 kb on + strand, within OH686_10035 at 2060.081 kb on + strand, within OH686_10035 at 2060.081 kb on + strand, within OH686_10035 at 2060.082 kb on - strand, within OH686_10035 at 2060.124 kb on - strand, within OH686_10035 at 2060.168 kb on + strand, within OH686_10035 at 2060.168 kb on + strand, within OH686_10035 at 2060.168 kb on + strand, within OH686_10035 at 2060.168 kb on + strand, within OH686_10035 at 2060.169 kb on - strand, within OH686_10035 at 2060.179 kb on + strand, within OH686_10035 at 2060.179 kb on + strand, within OH686_10035 at 2060.179 kb on + strand, within OH686_10035 at 2060.179 kb on + strand, within OH686_10035 at 2060.229 kb on + strand, within OH686_10035 at 2060.229 kb on + strand, within OH686_10035 at 2060.229 kb on + strand, within OH686_10035 at 2060.230 kb on - strand, within OH686_10035 at 2060.241 kb on - strand, within OH686_10035 at 2060.274 kb on + strand, within OH686_10035 at 2060.328 kb on - strand at 2060.356 kb on - strand at 2060.356 kb on - strand at 2060.359 kb on + strand at 2060.362 kb on - strand at 2060.465 kb on - strand, within OH686_10040 at 2060.515 kb on + strand, within OH686_10040 at 2060.522 kb on + strand, within OH686_10040 at 2060.609 kb on - strand, within OH686_10040 at 2060.706 kb on + strand, within OH686_10040 at 2060.707 kb on - strand, within OH686_10040 at 2060.862 kb on - strand, within OH686_10040 at 2060.864 kb on + strand, within OH686_10040 at 2060.865 kb on - strand, within OH686_10040 at 2060.892 kb on - strand, within OH686_10040 at 2060.929 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) remove 2,059,008 - OH686_10025 0.65 -0.2 2,059,008 - OH686_10025 0.65 +0.3 2,059,035 + OH686_10025 0.66 -0.9 2,059,134 - OH686_10025 0.71 +0.3 2,059,207 + OH686_10025 0.74 -1.8 2,059,207 + OH686_10025 0.74 -2.1 2,059,249 + OH686_10025 0.76 -1.5 2,059,315 + OH686_10025 0.79 -0.6 2,059,315 + OH686_10025 0.79 -0.7 2,059,324 + OH686_10025 0.80 -1.1 2,059,324 + OH686_10025 0.80 -1.0 2,059,325 - OH686_10025 0.80 +0.6 2,059,325 - OH686_10025 0.80 -0.4 2,059,354 + OH686_10025 0.81 -1.6 2,059,420 + OH686_10025 0.84 -1.1 2,059,447 + OH686_10025 0.86 -2.3 2,059,462 + OH686_10025 0.86 -1.1 2,059,462 + OH686_10025 0.86 -1.3 2,059,463 - OH686_10025 0.86 -0.4 2,059,463 - OH686_10025 0.86 +0.7 2,059,463 - OH686_10025 0.86 -0.2 2,059,463 - OH686_10025 0.86 +0.5 2,059,492 + OH686_10025 0.88 -2.6 2,059,537 + OH686_10025 0.90 -2.3 2,059,537 + OH686_10025 0.90 -0.7 2,059,538 - OH686_10025 0.90 +0.7 2,059,588 + -0.2 2,059,588 + -1.0 2,059,589 - +0.1 2,059,589 - +0.5 2,059,589 - -0.6 2,059,589 - -0.2 2,059,589 - -0.4 2,059,589 - -0.6 2,059,609 + -1.3 2,059,609 + -1.1 2,059,609 + -2.0 2,059,609 + -0.1 2,059,609 + -2.3 2,059,609 + -1.9 2,059,610 - +0.5 2,059,610 - -0.1 2,059,610 - +0.4 2,059,610 - -0.6 2,059,610 - -0.6 2,059,677 - +0.3 2,059,677 - +0.3 2,059,677 - +0.4 2,059,748 - -0.0 2,059,755 - +0.5 2,059,780 - -0.8 2,059,827 + OH686_10030 0.16 -0.7 2,059,828 - OH686_10030 0.16 -0.7 2,059,830 + OH686_10030 0.18 -0.0 2,059,830 + OH686_10030 0.18 -0.2 2,059,830 + OH686_10030 0.18 -0.1 2,060,037 - OH686_10035 0.36 -0.1 2,060,081 + OH686_10035 0.45 +0.6 2,060,081 + OH686_10035 0.45 +0.2 2,060,081 + OH686_10035 0.45 +0.4 2,060,082 - OH686_10035 0.45 -0.2 2,060,124 - OH686_10035 0.55 +0.5 2,060,168 + OH686_10035 0.64 -0.3 2,060,168 + OH686_10035 0.64 +0.2 2,060,168 + OH686_10035 0.64 -0.5 2,060,168 + OH686_10035 0.64 -0.9 2,060,169 - OH686_10035 0.64 -0.4 2,060,179 + OH686_10035 0.66 -0.2 2,060,179 + OH686_10035 0.66 -0.1 2,060,179 + OH686_10035 0.66 -0.1 2,060,179 + OH686_10035 0.66 -0.2 2,060,229 + OH686_10035 0.77 -0.0 2,060,229 + OH686_10035 0.77 -0.2 2,060,229 + OH686_10035 0.77 -0.7 2,060,230 - OH686_10035 0.77 -0.1 2,060,241 - OH686_10035 0.80 -0.5 2,060,274 + OH686_10035 0.87 -0.0 2,060,328 - +0.3 2,060,356 - -1.3 2,060,356 - -0.4 2,060,359 + -0.6 2,060,362 - +0.8 2,060,465 - OH686_10040 0.21 +0.1 2,060,515 + OH686_10040 0.29 +0.4 2,060,522 + OH686_10040 0.30 +0.5 2,060,609 - OH686_10040 0.44 -0.6 2,060,706 + OH686_10040 0.60 +0.3 2,060,707 - OH686_10040 0.60 +0.9 2,060,862 - OH686_10040 0.84 -1.1 2,060,864 + OH686_10040 0.85 +0.0 2,060,865 - OH686_10040 0.85 -0.5 2,060,892 - OH686_10040 0.89 -1.1 2,060,929 + -0.3
Or see this region's nucleotide sequence