Strain Fitness in Pseudomonas sp. S08-1 around OH686_02490

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_02480 and OH686_02485 are separated by 45 nucleotidesOH686_02485 and OH686_02490 overlap by 4 nucleotidesOH686_02490 and OH686_02495 are separated by 422 nucleotides OH686_02480: OH686_02480 - DNA-binding response regulator GltR, controls specific porins for the entry of glucose, at 528,067 to 528,804 _02480 OH686_02485: OH686_02485 - glucokinase, at 528,850 to 529,803 _02485 OH686_02490: OH686_02490 - phosphogluconate dehydratase, at 529,800 to 531,626 _02490 OH686_02495: OH686_02495 - Methyl-accepting chemotaxis sensor/transducer protein, at 532,049 to 533,683 _02495 Position (kb) 529 530 531 532Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 528.852 kb on - strandat 528.871 kb on + strandat 528.872 kb on - strandat 528.872 kb on - strandat 528.935 kb on + strandat 528.936 kb on - strandat 528.936 kb on - strandat 529.028 kb on + strand, within OH686_02485at 529.028 kb on + strand, within OH686_02485at 529.028 kb on + strand, within OH686_02485at 529.028 kb on + strand, within OH686_02485at 529.028 kb on + strand, within OH686_02485at 529.028 kb on + strand, within OH686_02485at 529.029 kb on - strand, within OH686_02485at 529.029 kb on - strand, within OH686_02485at 529.029 kb on - strand, within OH686_02485at 529.029 kb on - strand, within OH686_02485at 529.205 kb on + strand, within OH686_02485at 529.205 kb on + strand, within OH686_02485at 529.205 kb on + strand, within OH686_02485at 529.205 kb on + strand, within OH686_02485at 529.205 kb on + strand, within OH686_02485at 529.205 kb on + strand, within OH686_02485at 529.206 kb on - strand, within OH686_02485at 529.206 kb on - strand, within OH686_02485at 529.206 kb on - strand, within OH686_02485at 529.206 kb on - strand, within OH686_02485at 529.206 kb on - strand, within OH686_02485at 529.206 kb on - strand, within OH686_02485at 529.372 kb on + strand, within OH686_02485at 529.372 kb on + strand, within OH686_02485at 529.372 kb on + strand, within OH686_02485at 529.373 kb on - strand, within OH686_02485at 529.581 kb on + strand, within OH686_02485at 529.581 kb on + strand, within OH686_02485at 529.786 kb on + strandat 529.922 kb on + strandat 529.923 kb on - strandat 529.923 kb on - strandat 530.038 kb on + strand, within OH686_02490at 530.038 kb on + strand, within OH686_02490at 530.039 kb on - strand, within OH686_02490at 530.039 kb on - strand, within OH686_02490at 530.039 kb on - strand, within OH686_02490at 530.486 kb on - strand, within OH686_02490at 530.486 kb on - strand, within OH686_02490at 530.618 kb on - strand, within OH686_02490at 530.717 kb on + strand, within OH686_02490at 530.717 kb on + strand, within OH686_02490at 530.717 kb on + strand, within OH686_02490at 530.717 kb on + strand, within OH686_02490at 530.717 kb on + strand, within OH686_02490at 530.718 kb on - strand, within OH686_02490at 530.718 kb on - strand, within OH686_02490at 530.956 kb on + strand, within OH686_02490at 530.956 kb on + strand, within OH686_02490at 530.956 kb on + strand, within OH686_02490at 530.983 kb on + strand, within OH686_02490at 530.984 kb on - strand, within OH686_02490at 530.984 kb on - strand, within OH686_02490at 530.984 kb on - strand, within OH686_02490at 530.984 kb on - strand, within OH686_02490at 530.984 kb on - strand, within OH686_02490at 531.037 kb on + strand, within OH686_02490at 531.038 kb on - strand, within OH686_02490at 531.368 kb on - strand, within OH686_02490at 531.376 kb on + strand, within OH686_02490at 531.377 kb on - strand, within OH686_02490at 531.377 kb on - strand, within OH686_02490at 531.406 kb on + strand, within OH686_02490at 531.406 kb on + strand, within OH686_02490at 531.406 kb on + strand, within OH686_02490at 531.407 kb on - strand, within OH686_02490at 531.407 kb on - strand, within OH686_02490at 531.407 kb on - strand, within OH686_02490at 531.559 kb on + strandat 531.559 kb on + strandat 531.647 kb on - strandat 531.676 kb on + strandat 531.676 kb on + strandat 531.676 kb on + strandat 531.676 kb on + strandat 531.677 kb on - strandat 531.677 kb on - strandat 531.709 kb on - strandat 531.729 kb on + strandat 531.730 kb on - strandat 531.730 kb on - strandat 531.742 kb on - strandat 531.747 kb on + strandat 531.747 kb on + strandat 531.747 kb on + strandat 531.747 kb on + strandat 531.748 kb on - strandat 531.748 kb on - strandat 531.748 kb on - strandat 531.748 kb on - strandat 531.748 kb on - strandat 531.748 kb on - strandat 531.764 kb on - strandat 531.821 kb on + strandat 531.821 kb on + strandat 531.821 kb on + strandat 531.821 kb on + strandat 531.821 kb on + strandat 531.822 kb on - strandat 531.822 kb on - strandat 531.822 kb on - strandat 531.822 kb on - strandat 531.822 kb on - strandat 531.822 kb on - strandat 531.822 kb on - strandat 531.822 kb on - strandat 531.851 kb on - strandat 532.031 kb on + strandat 532.031 kb on + strandat 532.174 kb on + strandat 532.175 kb on - strandat 532.417 kb on + strand, within OH686_02495at 532.417 kb on + strand, within OH686_02495at 532.417 kb on + strand, within OH686_02495at 532.417 kb on + strand, within OH686_02495at 532.417 kb on + strand, within OH686_02495at 532.418 kb on - strand, within OH686_02495

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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528,852 - +1.8
528,871 + -1.6
528,872 - -2.2
528,872 - -3.1
528,935 + -1.9
528,936 - -3.7
528,936 - -0.6
529,028 + OH686_02485 0.19 -2.6
529,028 + OH686_02485 0.19 -2.8
529,028 + OH686_02485 0.19 -2.0
529,028 + OH686_02485 0.19 -2.3
529,028 + OH686_02485 0.19 -1.4
529,028 + OH686_02485 0.19 -2.4
529,029 - OH686_02485 0.19 -3.3
529,029 - OH686_02485 0.19 -4.0
529,029 - OH686_02485 0.19 -4.5
529,029 - OH686_02485 0.19 -2.5
529,205 + OH686_02485 0.37 -2.1
529,205 + OH686_02485 0.37 -2.3
529,205 + OH686_02485 0.37 -4.0
529,205 + OH686_02485 0.37 -2.3
529,205 + OH686_02485 0.37 -2.6
529,205 + OH686_02485 0.37 -1.6
529,206 - OH686_02485 0.37 -2.3
529,206 - OH686_02485 0.37 -1.2
529,206 - OH686_02485 0.37 -1.1
529,206 - OH686_02485 0.37 -3.3
529,206 - OH686_02485 0.37 -4.0
529,206 - OH686_02485 0.37 -2.7
529,372 + OH686_02485 0.55 -3.1
529,372 + OH686_02485 0.55 -2.7
529,372 + OH686_02485 0.55 -1.2
529,373 - OH686_02485 0.55 -2.9
529,581 + OH686_02485 0.77 -4.5
529,581 + OH686_02485 0.77 -2.7
529,786 + -3.4
529,922 + -4.2
529,923 - -0.4
529,923 - -5.1
530,038 + OH686_02490 0.13 -2.9
530,038 + OH686_02490 0.13 -3.5
530,039 - OH686_02490 0.13 -3.1
530,039 - OH686_02490 0.13 -4.2
530,039 - OH686_02490 0.13 -2.9
530,486 - OH686_02490 0.38 -2.0
530,486 - OH686_02490 0.38 -2.3
530,618 - OH686_02490 0.45 -2.0
530,717 + OH686_02490 0.50 -2.7
530,717 + OH686_02490 0.50 -4.1
530,717 + OH686_02490 0.50 -3.7
530,717 + OH686_02490 0.50 -1.8
530,717 + OH686_02490 0.50 -2.9
530,718 - OH686_02490 0.50 -3.1
530,718 - OH686_02490 0.50 -4.2
530,956 + OH686_02490 0.63 -2.6
530,956 + OH686_02490 0.63 -1.1
530,956 + OH686_02490 0.63 -1.1
530,983 + OH686_02490 0.65 -1.9
530,984 - OH686_02490 0.65 -3.5
530,984 - OH686_02490 0.65 -4.3
530,984 - OH686_02490 0.65 -4.1
530,984 - OH686_02490 0.65 -2.1
530,984 - OH686_02490 0.65 -4.4
531,037 + OH686_02490 0.68 -3.3
531,038 - OH686_02490 0.68 -2.8
531,368 - OH686_02490 0.86 -4.6
531,376 + OH686_02490 0.86 -5.0
531,377 - OH686_02490 0.86 -3.0
531,377 - OH686_02490 0.86 -3.4
531,406 + OH686_02490 0.88 -1.8
531,406 + OH686_02490 0.88 -3.0
531,406 + OH686_02490 0.88 -3.1
531,407 - OH686_02490 0.88 -1.4
531,407 - OH686_02490 0.88 -4.9
531,407 - OH686_02490 0.88 -3.2
531,559 + -4.1
531,559 + -3.1
531,647 - +0.9
531,676 + -1.9
531,676 + +0.1
531,676 + -2.1
531,676 + -3.4
531,677 - -0.6
531,677 - -0.7
531,709 - +2.2
531,729 + -3.6
531,730 - +0.2
531,730 - +0.5
531,742 - -0.1
531,747 + -1.2
531,747 + -3.2
531,747 + -2.1
531,747 + -1.2
531,748 - +0.7
531,748 - +0.8
531,748 - +0.8
531,748 - +0.0
531,748 - +0.7
531,748 - +0.6
531,764 - +0.5
531,821 + -1.8
531,821 + -2.1
531,821 + -3.1
531,821 + -1.4
531,821 + -1.9
531,822 - +0.9
531,822 - -0.1
531,822 - -0.2
531,822 - +1.2
531,822 - +1.2
531,822 - -0.4
531,822 - +0.3
531,822 - -0.1
531,851 - +1.4
532,031 + -3.1
532,031 + -2.4
532,174 + -0.5
532,175 - +0.9
532,417 + OH686_02495 0.23 +0.6
532,417 + OH686_02495 0.23 +0.2
532,417 + OH686_02495 0.23 +0.2
532,417 + OH686_02495 0.23 -0.2
532,417 + OH686_02495 0.23 -0.6
532,418 - OH686_02495 0.23 +1.2

Or see this region's nucleotide sequence