Strain Fitness in Pseudomonas sp. S08-1 around OH686_02425

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_02415 and OH686_02420 are separated by 26 nucleotidesOH686_02420 and OH686_02425 are separated by 43 nucleotidesOH686_02425 and OH686_02430 are separated by 16 nucleotidesOH686_02430 and OH686_02435 overlap by 14 nucleotides OH686_02415: OH686_02415 - Glyceraldehyde-3-phosphate dehydrogenase, putative, at 513,852 to 515,477 _02415 OH686_02420: OH686_02420 - hypothetical protein, at 515,504 to 515,668 _02420 OH686_02425: OH686_02425 - 4-hydroxy-2-oxoglutarate aldolase or 2-dehydro-3-deoxyphosphogluconate aldolase , at 515,712 to 516,401 _02425 OH686_02430: OH686_02430 - 6-phosphogluconolactonase , eukaryotic type, at 516,418 to 517,134 _02430 OH686_02435: OH686_02435 - glucose-6-phosphate dehydrogenase, at 517,121 to 518,590 _02435 Position (kb) 515 516 517Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 514.759 kb on + strand, within OH686_02415at 514.759 kb on + strand, within OH686_02415at 514.759 kb on + strand, within OH686_02415at 514.759 kb on + strand, within OH686_02415at 514.759 kb on + strand, within OH686_02415at 514.760 kb on - strand, within OH686_02415at 514.760 kb on - strand, within OH686_02415at 514.760 kb on - strand, within OH686_02415at 514.760 kb on - strand, within OH686_02415at 514.760 kb on - strand, within OH686_02415at 514.760 kb on - strand, within OH686_02415at 514.760 kb on - strand, within OH686_02415at 514.760 kb on - strand, within OH686_02415at 514.760 kb on - strand, within OH686_02415at 514.760 kb on - strand, within OH686_02415at 514.859 kb on + strand, within OH686_02415at 514.860 kb on - strand, within OH686_02415at 514.912 kb on + strand, within OH686_02415at 514.913 kb on - strand, within OH686_02415at 514.918 kb on + strand, within OH686_02415at 514.918 kb on + strand, within OH686_02415at 514.918 kb on + strand, within OH686_02415at 514.918 kb on + strand, within OH686_02415at 514.918 kb on + strand, within OH686_02415at 514.919 kb on - strand, within OH686_02415at 514.919 kb on - strand, within OH686_02415at 514.919 kb on - strand, within OH686_02415at 514.919 kb on - strand, within OH686_02415at 514.919 kb on - strand, within OH686_02415at 514.919 kb on - strand, within OH686_02415at 514.919 kb on - strand, within OH686_02415at 515.044 kb on + strand, within OH686_02415at 515.044 kb on + strand, within OH686_02415at 515.044 kb on + strand, within OH686_02415at 515.044 kb on + strand, within OH686_02415at 515.045 kb on - strand, within OH686_02415at 515.045 kb on - strand, within OH686_02415at 515.218 kb on + strand, within OH686_02415at 515.218 kb on + strand, within OH686_02415at 515.219 kb on - strand, within OH686_02415at 515.219 kb on - strand, within OH686_02415at 515.219 kb on - strand, within OH686_02415at 515.219 kb on - strand, within OH686_02415at 515.384 kb on - strandat 515.384 kb on - strandat 515.384 kb on - strandat 515.384 kb on - strandat 515.384 kb on - strandat 515.384 kb on - strandat 515.583 kb on + strand, within OH686_02420at 515.673 kb on + strandat 515.673 kb on + strandat 515.674 kb on - strandat 515.674 kb on - strandat 515.674 kb on - strandat 515.690 kb on - strandat 515.695 kb on + strandat 515.695 kb on + strandat 515.695 kb on + strandat 515.696 kb on - strandat 515.696 kb on - strandat 515.696 kb on - strandat 515.836 kb on + strand, within OH686_02425at 515.836 kb on + strand, within OH686_02425at 515.836 kb on + strand, within OH686_02425at 515.836 kb on + strand, within OH686_02425at 515.836 kb on + strand, within OH686_02425at 515.836 kb on + strand, within OH686_02425at 515.836 kb on + strand, within OH686_02425at 515.836 kb on + strand, within OH686_02425at 515.836 kb on + strand, within OH686_02425at 515.836 kb on + strand, within OH686_02425at 515.836 kb on + strand, within OH686_02425at 515.836 kb on + strand, within OH686_02425at 515.836 kb on + strand, within OH686_02425at 515.836 kb on + strand, within OH686_02425at 515.836 kb on + strand, within OH686_02425at 515.836 kb on + strand, within OH686_02425at 515.836 kb on + strand, within OH686_02425at 515.837 kb on - strand, within OH686_02425at 515.837 kb on - strand, within OH686_02425at 515.837 kb on - strand, within OH686_02425at 515.837 kb on - strand, within OH686_02425at 515.837 kb on - strand, within OH686_02425at 515.837 kb on - strand, within OH686_02425at 515.837 kb on - strand, within OH686_02425at 515.837 kb on - strand, within OH686_02425at 515.837 kb on - strand, within OH686_02425at 515.837 kb on - strand, within OH686_02425at 515.837 kb on - strand, within OH686_02425at 515.837 kb on - strand, within OH686_02425at 515.837 kb on - strand, within OH686_02425at 515.837 kb on - strand, within OH686_02425at 515.837 kb on - strand, within OH686_02425at 515.837 kb on - strand, within OH686_02425at 515.837 kb on - strand, within OH686_02425at 515.977 kb on + strand, within OH686_02425at 516.034 kb on + strand, within OH686_02425at 516.034 kb on + strand, within OH686_02425at 516.034 kb on + strand, within OH686_02425at 516.035 kb on - strand, within OH686_02425at 516.035 kb on - strand, within OH686_02425at 516.431 kb on + strandat 516.431 kb on + strandat 516.431 kb on + strandat 516.432 kb on - strandat 516.432 kb on - strandat 516.432 kb on - strandat 516.801 kb on - strand, within OH686_02430at 516.801 kb on - strand, within OH686_02430at 517.135 kb on - strandat 517.200 kb on + strandat 517.200 kb on + strandat 517.201 kb on - strandat 517.201 kb on - strandat 517.267 kb on - strandat 517.362 kb on + strand, within OH686_02435at 517.362 kb on + strand, within OH686_02435at 517.362 kb on + strand, within OH686_02435at 517.363 kb on - strand, within OH686_02435at 517.363 kb on - strand, within OH686_02435at 517.363 kb on - strand, within OH686_02435at 517.363 kb on - strand, within OH686_02435at 517.363 kb on - strand, within OH686_02435

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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514,759 + OH686_02415 0.56 -1.7
514,759 + OH686_02415 0.56 -1.4
514,759 + OH686_02415 0.56 -2.9
514,759 + OH686_02415 0.56 -3.5
514,759 + OH686_02415 0.56 -3.1
514,760 - OH686_02415 0.56 -3.3
514,760 - OH686_02415 0.56 -2.3
514,760 - OH686_02415 0.56 -1.0
514,760 - OH686_02415 0.56 -1.7
514,760 - OH686_02415 0.56 -2.6
514,760 - OH686_02415 0.56 -2.8
514,760 - OH686_02415 0.56 -1.0
514,760 - OH686_02415 0.56 -2.8
514,760 - OH686_02415 0.56 -1.7
514,760 - OH686_02415 0.56 -0.4
514,859 + OH686_02415 0.62 -3.4
514,860 - OH686_02415 0.62 -3.9
514,912 + OH686_02415 0.65 -2.9
514,913 - OH686_02415 0.65 -3.7
514,918 + OH686_02415 0.66 -2.7
514,918 + OH686_02415 0.66 -3.3
514,918 + OH686_02415 0.66 -1.0
514,918 + OH686_02415 0.66 -3.2
514,918 + OH686_02415 0.66 -4.5
514,919 - OH686_02415 0.66 -1.4
514,919 - OH686_02415 0.66 -2.7
514,919 - OH686_02415 0.66 -3.0
514,919 - OH686_02415 0.66 -2.1
514,919 - OH686_02415 0.66 -2.0
514,919 - OH686_02415 0.66 -2.0
514,919 - OH686_02415 0.66 -2.3
515,044 + OH686_02415 0.73 -3.6
515,044 + OH686_02415 0.73 -3.6
515,044 + OH686_02415 0.73 -2.8
515,044 + OH686_02415 0.73 -3.4
515,045 - OH686_02415 0.73 -2.3
515,045 - OH686_02415 0.73 -4.2
515,218 + OH686_02415 0.84 -1.5
515,218 + OH686_02415 0.84 -5.1
515,219 - OH686_02415 0.84 +0.1
515,219 - OH686_02415 0.84 -2.8
515,219 - OH686_02415 0.84 -3.4
515,219 - OH686_02415 0.84 -3.4
515,384 - -2.0
515,384 - -3.1
515,384 - -4.5
515,384 - -1.3
515,384 - -3.2
515,384 - -2.4
515,583 + OH686_02420 0.48 -1.4
515,673 + -1.6
515,673 + -3.0
515,674 - -0.8
515,674 - +0.5
515,674 - -0.5
515,690 - -2.0
515,695 + -3.5
515,695 + -1.5
515,695 + -1.9
515,696 - -0.3
515,696 - -0.0
515,696 - +0.0
515,836 + OH686_02425 0.18 -3.0
515,836 + OH686_02425 0.18 -4.6
515,836 + OH686_02425 0.18 -2.5
515,836 + OH686_02425 0.18 -3.2
515,836 + OH686_02425 0.18 -1.9
515,836 + OH686_02425 0.18 -2.2
515,836 + OH686_02425 0.18 -2.6
515,836 + OH686_02425 0.18 -2.8
515,836 + OH686_02425 0.18 -4.2
515,836 + OH686_02425 0.18 -4.4
515,836 + OH686_02425 0.18 -3.7
515,836 + OH686_02425 0.18 -1.9
515,836 + OH686_02425 0.18 -2.6
515,836 + OH686_02425 0.18 -3.9
515,836 + OH686_02425 0.18 -3.7
515,836 + OH686_02425 0.18 -2.7
515,836 + OH686_02425 0.18 -2.2
515,837 - OH686_02425 0.18 -3.0
515,837 - OH686_02425 0.18 -4.7
515,837 - OH686_02425 0.18 -3.4
515,837 - OH686_02425 0.18 -0.6
515,837 - OH686_02425 0.18 -3.4
515,837 - OH686_02425 0.18 -2.0
515,837 - OH686_02425 0.18 -2.7
515,837 - OH686_02425 0.18 -3.0
515,837 - OH686_02425 0.18 -3.3
515,837 - OH686_02425 0.18 -3.4
515,837 - OH686_02425 0.18 -2.6
515,837 - OH686_02425 0.18 -3.9
515,837 - OH686_02425 0.18 -2.6
515,837 - OH686_02425 0.18 -2.0
515,837 - OH686_02425 0.18 -1.6
515,837 - OH686_02425 0.18 -3.0
515,837 - OH686_02425 0.18 -2.4
515,977 + OH686_02425 0.38 -1.9
516,034 + OH686_02425 0.47 -4.4
516,034 + OH686_02425 0.47 -2.5
516,034 + OH686_02425 0.47 -3.1
516,035 - OH686_02425 0.47 -2.0
516,035 - OH686_02425 0.47 -4.0
516,431 + -3.6
516,431 + -3.2
516,431 + -2.7
516,432 - -1.6
516,432 - -1.4
516,432 - -1.6
516,801 - OH686_02430 0.53 -2.8
516,801 - OH686_02430 0.53 -3.3
517,135 - -1.6
517,200 + -3.2
517,200 + -3.6
517,201 - -2.0
517,201 - -2.1
517,267 - -2.8
517,362 + OH686_02435 0.16 -3.5
517,362 + OH686_02435 0.16 -0.6
517,362 + OH686_02435 0.16 -2.1
517,363 - OH686_02435 0.16 -2.3
517,363 - OH686_02435 0.16 -1.5
517,363 - OH686_02435 0.16 -0.6
517,363 - OH686_02435 0.16 -2.1
517,363 - OH686_02435 0.16 -1.9

Or see this region's nucleotide sequence