Strain Fitness in Pseudomonas sp. S08-1 around OH686_01915

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_01905 and OH686_01910 are separated by 8 nucleotidesOH686_01910 and OH686_01915 are separated by 244 nucleotidesOH686_01915 and OH686_01920 are separated by 201 nucleotides OH686_01905: OH686_01905 - K+-transporting ATPase, A subunit, at 407,797 to 409,485 _01905 OH686_01910: OH686_01910 - CDS, at 409,494 to 409,583 _01910 OH686_01915: OH686_01915 - GTP-binding protein, at 409,828 to 411,417 _01915 OH686_01920: OH686_01920 - Uncharacterized UPF0118 membrane protein, at 411,619 to 412,692 _01920 Position (kb) 409 410 411 412Strain fitness (log2 ratio) -2 -1 0 1 2at 408.872 kb on + strand, within OH686_01905at 408.872 kb on + strand, within OH686_01905at 408.872 kb on + strand, within OH686_01905at 408.873 kb on - strand, within OH686_01905at 408.873 kb on - strand, within OH686_01905at 408.873 kb on - strand, within OH686_01905at 408.873 kb on - strand, within OH686_01905at 408.873 kb on - strand, within OH686_01905at 408.947 kb on + strand, within OH686_01905at 408.947 kb on + strand, within OH686_01905at 408.948 kb on - strand, within OH686_01905at 408.948 kb on - strand, within OH686_01905at 408.981 kb on + strand, within OH686_01905at 408.982 kb on - strand, within OH686_01905at 408.982 kb on - strand, within OH686_01905at 409.064 kb on + strand, within OH686_01905at 409.064 kb on + strand, within OH686_01905at 409.064 kb on + strand, within OH686_01905at 409.064 kb on + strand, within OH686_01905at 409.064 kb on + strand, within OH686_01905at 409.064 kb on + strand, within OH686_01905at 409.064 kb on + strand, within OH686_01905at 409.065 kb on - strand, within OH686_01905at 409.065 kb on - strand, within OH686_01905at 409.065 kb on - strand, within OH686_01905at 409.065 kb on - strand, within OH686_01905at 409.065 kb on - strand, within OH686_01905at 409.065 kb on - strand, within OH686_01905at 409.065 kb on - strand, within OH686_01905at 409.065 kb on - strand, within OH686_01905at 409.065 kb on - strand, within OH686_01905at 409.097 kb on + strand, within OH686_01905at 409.097 kb on + strand, within OH686_01905at 409.097 kb on + strand, within OH686_01905at 409.097 kb on + strand, within OH686_01905at 409.098 kb on - strand, within OH686_01905at 409.098 kb on - strand, within OH686_01905at 409.098 kb on - strand, within OH686_01905at 409.121 kb on + strand, within OH686_01905at 409.121 kb on + strand, within OH686_01905at 409.122 kb on - strand, within OH686_01905at 409.122 kb on - strand, within OH686_01905at 409.122 kb on - strand, within OH686_01905at 409.122 kb on - strand, within OH686_01905at 409.164 kb on + strand, within OH686_01905at 409.165 kb on - strand, within OH686_01905at 409.165 kb on - strand, within OH686_01905at 409.244 kb on - strand, within OH686_01905at 409.289 kb on + strand, within OH686_01905at 409.289 kb on + strand, within OH686_01905at 409.289 kb on + strand, within OH686_01905at 409.289 kb on + strand, within OH686_01905at 409.289 kb on + strand, within OH686_01905at 409.289 kb on + strand, within OH686_01905at 409.289 kb on + strand, within OH686_01905at 409.289 kb on + strand, within OH686_01905at 409.289 kb on + strand, within OH686_01905at 409.289 kb on + strand, within OH686_01905at 409.289 kb on + strand, within OH686_01905at 409.290 kb on - strand, within OH686_01905at 409.290 kb on - strand, within OH686_01905at 409.290 kb on - strand, within OH686_01905at 409.290 kb on - strand, within OH686_01905at 409.290 kb on - strand, within OH686_01905at 409.290 kb on - strand, within OH686_01905at 409.290 kb on - strand, within OH686_01905at 409.337 kb on + strandat 409.337 kb on + strandat 409.337 kb on + strandat 409.337 kb on + strandat 409.337 kb on + strandat 409.337 kb on + strandat 409.337 kb on + strandat 409.338 kb on - strandat 409.338 kb on - strandat 409.363 kb on + strandat 409.363 kb on + strandat 409.363 kb on + strandat 409.363 kb on + strandat 409.364 kb on - strandat 409.364 kb on - strandat 409.403 kb on + strandat 409.403 kb on + strandat 409.404 kb on - strandat 409.409 kb on + strandat 409.410 kb on - strandat 409.410 kb on - strandat 409.469 kb on + strandat 409.469 kb on + strandat 409.469 kb on + strandat 409.470 kb on - strandat 409.495 kb on + strandat 409.513 kb on - strand, within OH686_01910at 409.531 kb on + strand, within OH686_01910at 409.531 kb on + strand, within OH686_01910at 409.531 kb on + strand, within OH686_01910at 409.531 kb on + strand, within OH686_01910at 409.531 kb on + strand, within OH686_01910at 409.531 kb on + strand, within OH686_01910at 409.531 kb on + strand, within OH686_01910at 409.531 kb on + strand, within OH686_01910at 409.531 kb on + strand, within OH686_01910at 409.532 kb on - strand, within OH686_01910at 409.532 kb on - strand, within OH686_01910at 409.532 kb on - strand, within OH686_01910at 409.532 kb on - strand, within OH686_01910at 409.532 kb on - strand, within OH686_01910at 409.532 kb on - strand, within OH686_01910at 409.532 kb on - strand, within OH686_01910at 409.532 kb on - strand, within OH686_01910at 409.532 kb on - strand, within OH686_01910at 409.532 kb on - strand, within OH686_01910at 409.532 kb on - strand, within OH686_01910at 409.532 kb on - strand, within OH686_01910at 409.532 kb on - strand, within OH686_01910at 409.607 kb on - strandat 409.607 kb on - strandat 409.643 kb on - strandat 409.686 kb on + strandat 409.686 kb on + strandat 409.687 kb on - strandat 409.829 kb on + strandat 409.829 kb on + strandat 410.012 kb on + strand, within OH686_01915at 410.013 kb on - strand, within OH686_01915at 410.013 kb on - strand, within OH686_01915at 410.013 kb on - strand, within OH686_01915at 410.471 kb on + strand, within OH686_01915at 410.471 kb on + strand, within OH686_01915at 410.471 kb on + strand, within OH686_01915at 410.472 kb on - strand, within OH686_01915at 410.472 kb on - strand, within OH686_01915at 410.472 kb on - strand, within OH686_01915at 410.472 kb on - strand, within OH686_01915at 410.472 kb on - strand, within OH686_01915at 410.558 kb on + strand, within OH686_01915at 410.558 kb on + strand, within OH686_01915at 410.558 kb on + strand, within OH686_01915at 410.558 kb on + strand, within OH686_01915at 410.558 kb on + strand, within OH686_01915at 410.579 kb on + strand, within OH686_01915at 410.579 kb on + strand, within OH686_01915at 410.579 kb on + strand, within OH686_01915at 410.579 kb on + strand, within OH686_01915at 410.579 kb on + strand, within OH686_01915at 410.579 kb on + strand, within OH686_01915at 410.579 kb on + strand, within OH686_01915at 410.579 kb on + strand, within OH686_01915at 410.579 kb on + strand, within OH686_01915at 410.579 kb on + strand, within OH686_01915at 410.580 kb on - strand, within OH686_01915at 410.580 kb on - strand, within OH686_01915at 410.580 kb on - strand, within OH686_01915at 410.580 kb on - strand, within OH686_01915at 410.580 kb on - strand, within OH686_01915at 410.580 kb on - strand, within OH686_01915at 410.580 kb on - strand, within OH686_01915at 410.580 kb on - strand, within OH686_01915at 410.580 kb on - strand, within OH686_01915at 410.580 kb on - strand, within OH686_01915at 410.632 kb on + strand, within OH686_01915at 410.632 kb on + strand, within OH686_01915at 410.632 kb on + strand, within OH686_01915at 410.714 kb on + strand, within OH686_01915at 410.714 kb on + strand, within OH686_01915at 410.715 kb on - strand, within OH686_01915at 410.715 kb on - strand, within OH686_01915at 410.715 kb on - strand, within OH686_01915at 410.715 kb on - strand, within OH686_01915at 410.866 kb on - strand, within OH686_01915at 410.866 kb on - strand, within OH686_01915at 410.966 kb on + strand, within OH686_01915at 411.053 kb on + strand, within OH686_01915at 411.053 kb on + strand, within OH686_01915at 411.053 kb on + strand, within OH686_01915at 411.053 kb on + strand, within OH686_01915at 411.053 kb on + strand, within OH686_01915at 411.053 kb on + strand, within OH686_01915at 411.053 kb on + strand, within OH686_01915at 411.053 kb on + strand, within OH686_01915at 411.054 kb on - strand, within OH686_01915at 411.054 kb on - strand, within OH686_01915at 411.054 kb on - strand, within OH686_01915at 411.054 kb on - strand, within OH686_01915at 411.054 kb on - strand, within OH686_01915at 411.054 kb on - strand, within OH686_01915at 411.054 kb on - strand, within OH686_01915at 411.054 kb on - strand, within OH686_01915at 411.344 kb on + strandat 411.344 kb on + strandat 411.344 kb on + strandat 411.344 kb on + strandat 411.344 kb on + strandat 411.345 kb on - strandat 411.345 kb on - strandat 411.345 kb on - strandat 411.345 kb on - strandat 411.345 kb on - strandat 411.345 kb on - strandat 411.391 kb on + strandat 411.391 kb on + strandat 411.391 kb on + strandat 411.391 kb on + strandat 411.392 kb on - strandat 411.399 kb on + strandat 411.399 kb on + strandat 411.400 kb on - strandat 411.560 kb on + strandat 411.561 kb on - strandat 411.620 kb on + strandat 411.620 kb on + strandat 411.620 kb on + strandat 411.620 kb on + strandat 411.620 kb on + strandat 411.621 kb on - strandat 411.621 kb on - strandat 411.621 kb on - strandat 411.621 kb on - strandat 411.621 kb on - strandat 411.621 kb on - strandat 411.621 kb on - strandat 411.621 kb on - strandat 411.621 kb on - strandat 411.621 kb on - strandat 411.695 kb on + strandat 411.695 kb on + strandat 411.695 kb on + strandat 411.696 kb on - strandat 411.696 kb on - strandat 411.696 kb on - strandat 411.696 kb on - strandat 411.696 kb on - strandat 411.696 kb on - strandat 411.696 kb on - strandat 411.696 kb on - strandat 411.696 kb on - strandat 411.696 kb on - strandat 411.815 kb on + strand, within OH686_01920at 411.815 kb on + strand, within OH686_01920at 411.815 kb on + strand, within OH686_01920at 411.815 kb on + strand, within OH686_01920at 411.815 kb on + strand, within OH686_01920at 411.816 kb on - strand, within OH686_01920at 411.887 kb on + strand, within OH686_01920at 411.888 kb on - strand, within OH686_01920at 411.888 kb on - strand, within OH686_01920at 412.009 kb on - strand, within OH686_01920at 412.010 kb on + strand, within OH686_01920at 412.010 kb on + strand, within OH686_01920at 412.010 kb on + strand, within OH686_01920at 412.010 kb on + strand, within OH686_01920at 412.010 kb on + strand, within OH686_01920at 412.010 kb on + strand, within OH686_01920at 412.010 kb on + strand, within OH686_01920at 412.011 kb on - strand, within OH686_01920at 412.011 kb on - strand, within OH686_01920at 412.011 kb on - strand, within OH686_01920at 412.011 kb on - strand, within OH686_01920at 412.011 kb on - strand, within OH686_01920at 412.011 kb on - strand, within OH686_01920at 412.103 kb on + strand, within OH686_01920at 412.103 kb on + strand, within OH686_01920at 412.103 kb on + strand, within OH686_01920at 412.104 kb on - strand, within OH686_01920at 412.104 kb on - strand, within OH686_01920at 412.104 kb on - strand, within OH686_01920at 412.104 kb on - strand, within OH686_01920at 412.104 kb on - strand, within OH686_01920at 412.104 kb on - strand, within OH686_01920at 412.278 kb on - strand, within OH686_01920at 412.278 kb on - strand, within OH686_01920at 412.278 kb on - strand, within OH686_01920

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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408,872 + OH686_01905 0.64 +0.1
408,872 + OH686_01905 0.64 +0.7
408,872 + OH686_01905 0.64 +0.6
408,873 - OH686_01905 0.64 +0.6
408,873 - OH686_01905 0.64 -1.4
408,873 - OH686_01905 0.64 +0.1
408,873 - OH686_01905 0.64 -0.3
408,873 - OH686_01905 0.64 -0.1
408,947 + OH686_01905 0.68 -1.3
408,947 + OH686_01905 0.68 +0.5
408,948 - OH686_01905 0.68 -0.0
408,948 - OH686_01905 0.68 -0.9
408,981 + OH686_01905 0.70 -0.4
408,982 - OH686_01905 0.70 +0.0
408,982 - OH686_01905 0.70 -0.2
409,064 + OH686_01905 0.75 -0.9
409,064 + OH686_01905 0.75 +0.4
409,064 + OH686_01905 0.75 +0.0
409,064 + OH686_01905 0.75 -0.1
409,064 + OH686_01905 0.75 +0.5
409,064 + OH686_01905 0.75 +0.1
409,064 + OH686_01905 0.75 -0.3
409,065 - OH686_01905 0.75 +0.2
409,065 - OH686_01905 0.75 -0.1
409,065 - OH686_01905 0.75 -0.8
409,065 - OH686_01905 0.75 +0.3
409,065 - OH686_01905 0.75 +0.5
409,065 - OH686_01905 0.75 -0.5
409,065 - OH686_01905 0.75 +0.2
409,065 - OH686_01905 0.75 -0.7
409,065 - OH686_01905 0.75 -0.3
409,097 + OH686_01905 0.77 +0.2
409,097 + OH686_01905 0.77 +1.2
409,097 + OH686_01905 0.77 -0.3
409,097 + OH686_01905 0.77 +0.3
409,098 - OH686_01905 0.77 -0.5
409,098 - OH686_01905 0.77 -0.2
409,098 - OH686_01905 0.77 -0.8
409,121 + OH686_01905 0.78 +0.8
409,121 + OH686_01905 0.78 -0.8
409,122 - OH686_01905 0.78 -0.7
409,122 - OH686_01905 0.78 +0.0
409,122 - OH686_01905 0.78 -1.6
409,122 - OH686_01905 0.78 +0.7
409,164 + OH686_01905 0.81 +0.0
409,165 - OH686_01905 0.81 +0.9
409,165 - OH686_01905 0.81 +1.7
409,244 - OH686_01905 0.86 +0.0
409,289 + OH686_01905 0.88 +1.1
409,289 + OH686_01905 0.88 -0.5
409,289 + OH686_01905 0.88 -0.2
409,289 + OH686_01905 0.88 +0.6
409,289 + OH686_01905 0.88 +0.3
409,289 + OH686_01905 0.88 -0.0
409,289 + OH686_01905 0.88 +0.7
409,289 + OH686_01905 0.88 +0.6
409,289 + OH686_01905 0.88 -1.1
409,289 + OH686_01905 0.88 +0.6
409,289 + OH686_01905 0.88 +0.7
409,290 - OH686_01905 0.88 -0.3
409,290 - OH686_01905 0.88 -1.6
409,290 - OH686_01905 0.88 -1.0
409,290 - OH686_01905 0.88 -0.4
409,290 - OH686_01905 0.88 +0.0
409,290 - OH686_01905 0.88 +0.2
409,290 - OH686_01905 0.88 -0.2
409,337 + +0.3
409,337 + -0.6
409,337 + -0.3
409,337 + -0.2
409,337 + -0.4
409,337 + +0.5
409,337 + -0.4
409,338 - +0.0
409,338 - +0.6
409,363 + -0.0
409,363 + -1.3
409,363 + +0.9
409,363 + +0.3
409,364 - +0.6
409,364 - +1.0
409,403 + -0.2
409,403 + +0.8
409,404 - +0.3
409,409 + +1.0
409,410 - +1.7
409,410 - -1.0
409,469 + +1.2
409,469 + +0.6
409,469 + +1.4
409,470 - -0.3
409,495 + -0.9
409,513 - OH686_01910 0.21 -0.2
409,531 + OH686_01910 0.41 -0.1
409,531 + OH686_01910 0.41 -0.6
409,531 + OH686_01910 0.41 +1.4
409,531 + OH686_01910 0.41 +0.5
409,531 + OH686_01910 0.41 -0.9
409,531 + OH686_01910 0.41 +0.5
409,531 + OH686_01910 0.41 -0.7
409,531 + OH686_01910 0.41 -0.1
409,531 + OH686_01910 0.41 -0.8
409,532 - OH686_01910 0.42 +1.1
409,532 - OH686_01910 0.42 +0.6
409,532 - OH686_01910 0.42 +0.1
409,532 - OH686_01910 0.42 -0.5
409,532 - OH686_01910 0.42 +0.6
409,532 - OH686_01910 0.42 +0.6
409,532 - OH686_01910 0.42 -0.4
409,532 - OH686_01910 0.42 +0.7
409,532 - OH686_01910 0.42 -0.5
409,532 - OH686_01910 0.42 -0.7
409,532 - OH686_01910 0.42 -1.1
409,532 - OH686_01910 0.42 -0.1
409,532 - OH686_01910 0.42 -0.2
409,607 - -0.2
409,607 - +0.6
409,643 - -0.1
409,686 + -0.6
409,686 + +0.5
409,687 - -0.7
409,829 + -0.5
409,829 + +0.6
410,012 + OH686_01915 0.12 -0.6
410,013 - OH686_01915 0.12 -0.1
410,013 - OH686_01915 0.12 +0.1
410,013 - OH686_01915 0.12 +2.4
410,471 + OH686_01915 0.40 -1.0
410,471 + OH686_01915 0.40 -0.4
410,471 + OH686_01915 0.40 +0.5
410,472 - OH686_01915 0.41 -0.9
410,472 - OH686_01915 0.41 -1.3
410,472 - OH686_01915 0.41 +1.5
410,472 - OH686_01915 0.41 -1.2
410,472 - OH686_01915 0.41 +0.2
410,558 + OH686_01915 0.46 +0.2
410,558 + OH686_01915 0.46 +0.6
410,558 + OH686_01915 0.46 -1.2
410,558 + OH686_01915 0.46 -0.1
410,558 + OH686_01915 0.46 -0.7
410,579 + OH686_01915 0.47 -0.3
410,579 + OH686_01915 0.47 -0.3
410,579 + OH686_01915 0.47 -0.3
410,579 + OH686_01915 0.47 +0.5
410,579 + OH686_01915 0.47 -0.1
410,579 + OH686_01915 0.47 -0.4
410,579 + OH686_01915 0.47 +0.2
410,579 + OH686_01915 0.47 -0.9
410,579 + OH686_01915 0.47 -0.3
410,579 + OH686_01915 0.47 +1.1
410,580 - OH686_01915 0.47 -0.9
410,580 - OH686_01915 0.47 -0.2
410,580 - OH686_01915 0.47 -0.3
410,580 - OH686_01915 0.47 -0.4
410,580 - OH686_01915 0.47 +0.7
410,580 - OH686_01915 0.47 -0.4
410,580 - OH686_01915 0.47 -0.3
410,580 - OH686_01915 0.47 -0.1
410,580 - OH686_01915 0.47 +0.5
410,580 - OH686_01915 0.47 +0.4
410,632 + OH686_01915 0.51 -0.2
410,632 + OH686_01915 0.51 +0.7
410,632 + OH686_01915 0.51 +1.5
410,714 + OH686_01915 0.56 +0.6
410,714 + OH686_01915 0.56 -0.5
410,715 - OH686_01915 0.56 -0.6
410,715 - OH686_01915 0.56 -0.4
410,715 - OH686_01915 0.56 -0.7
410,715 - OH686_01915 0.56 -0.7
410,866 - OH686_01915 0.65 +0.6
410,866 - OH686_01915 0.65 +0.2
410,966 + OH686_01915 0.72 +0.7
411,053 + OH686_01915 0.77 -1.0
411,053 + OH686_01915 0.77 -0.2
411,053 + OH686_01915 0.77 +0.0
411,053 + OH686_01915 0.77 -0.6
411,053 + OH686_01915 0.77 +0.2
411,053 + OH686_01915 0.77 -0.6
411,053 + OH686_01915 0.77 -0.9
411,053 + OH686_01915 0.77 -0.4
411,054 - OH686_01915 0.77 -0.1
411,054 - OH686_01915 0.77 -0.8
411,054 - OH686_01915 0.77 +0.0
411,054 - OH686_01915 0.77 -1.2
411,054 - OH686_01915 0.77 +1.0
411,054 - OH686_01915 0.77 +1.0
411,054 - OH686_01915 0.77 +0.6
411,054 - OH686_01915 0.77 +0.2
411,344 + -0.4
411,344 + +0.5
411,344 + -1.0
411,344 + +0.4
411,344 + +0.2
411,345 - -0.1
411,345 - +0.3
411,345 - +0.6
411,345 - -0.2
411,345 - -0.5
411,345 - -0.2
411,391 + -2.0
411,391 + -0.0
411,391 + +0.3
411,391 + +0.6
411,392 - +0.5
411,399 + -1.2
411,399 + +1.7
411,400 - +0.5
411,560 + +0.7
411,561 - +0.4
411,620 + +0.2
411,620 + -0.5
411,620 + +1.0
411,620 + -0.6
411,620 + -0.4
411,621 - -0.0
411,621 - +0.2
411,621 - +0.2
411,621 - -1.1
411,621 - -1.3
411,621 - +0.1
411,621 - +0.1
411,621 - -0.4
411,621 - -0.3
411,621 - +0.4
411,695 + -1.7
411,695 + +0.6
411,695 + +0.4
411,696 - +0.1
411,696 - -0.3
411,696 - +0.7
411,696 - -1.5
411,696 - +0.3
411,696 - -0.3
411,696 - -0.8
411,696 - +0.7
411,696 - +0.2
411,696 - -0.6
411,815 + OH686_01920 0.18 -0.3
411,815 + OH686_01920 0.18 -0.0
411,815 + OH686_01920 0.18 -1.6
411,815 + OH686_01920 0.18 -0.3
411,815 + OH686_01920 0.18 -1.5
411,816 - OH686_01920 0.18 -1.0
411,887 + OH686_01920 0.25 -1.1
411,888 - OH686_01920 0.25 -0.8
411,888 - OH686_01920 0.25 +0.4
412,009 - OH686_01920 0.36 -0.3
412,010 + OH686_01920 0.36 -1.9
412,010 + OH686_01920 0.36 +0.7
412,010 + OH686_01920 0.36 -1.0
412,010 + OH686_01920 0.36 +0.3
412,010 + OH686_01920 0.36 -0.1
412,010 + OH686_01920 0.36 -0.3
412,010 + OH686_01920 0.36 +0.7
412,011 - OH686_01920 0.36 -0.5
412,011 - OH686_01920 0.36 +1.0
412,011 - OH686_01920 0.36 -1.2
412,011 - OH686_01920 0.36 -1.1
412,011 - OH686_01920 0.36 -0.0
412,011 - OH686_01920 0.36 +0.1
412,103 + OH686_01920 0.45 -0.6
412,103 + OH686_01920 0.45 -0.5
412,103 + OH686_01920 0.45 +0.2
412,104 - OH686_01920 0.45 +0.1
412,104 - OH686_01920 0.45 -0.1
412,104 - OH686_01920 0.45 -0.4
412,104 - OH686_01920 0.45 +1.0
412,104 - OH686_01920 0.45 -0.2
412,104 - OH686_01920 0.45 -1.0
412,278 - OH686_01920 0.61 +0.1
412,278 - OH686_01920 0.61 +1.1
412,278 - OH686_01920 0.61 +0.2

Or see this region's nucleotide sequence