Strain Fitness in Pseudomonas sp. S08-1 around OH686_01410

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_01395 and OH686_01400 are separated by 8 nucleotidesOH686_01400 and OH686_01405 are separated by 43 nucleotidesOH686_01405 and OH686_01410 are separated by 18 nucleotidesOH686_01410 and OH686_01415 are separated by 19 nucleotidesOH686_01415 and OH686_01420 are separated by 16 nucleotides OH686_01395: OH686_01395 - hypothetical protein' product='hypothetical protein, at 309,618 to 310,016 _01395 OH686_01400: OH686_01400 - hypothetical protein' product='hypothetical protein, at 310,025 to 310,537 _01400 OH686_01405: OH686_01405 - hypothetical protein, at 310,581 to 310,985 _01405 OH686_01410: OH686_01410 - hypothetical protein, at 311,004 to 311,498 _01410 OH686_01415: OH686_01415 - Streptothricin acetyltransferase, Streptomyces lavendulae type, at 311,518 to 312,033 _01415 OH686_01420: OH686_01420 - Oxidoreductase, short-chain dehydrogenase/reductase family, at 312,050 to 312,907 _01420 Position (kb) 311 312Strain fitness (log2 ratio) -3 -2 -1 0 1at 310.020 kb on + strandat 310.021 kb on - strandat 310.134 kb on + strand, within OH686_01400at 310.221 kb on + strand, within OH686_01400at 310.293 kb on - strand, within OH686_01400at 310.406 kb on - strand, within OH686_01400at 310.446 kb on - strand, within OH686_01400at 310.535 kb on + strandat 310.536 kb on - strandat 310.605 kb on + strandat 310.668 kb on + strand, within OH686_01405at 310.668 kb on + strand, within OH686_01405at 310.668 kb on + strand, within OH686_01405at 310.668 kb on + strand, within OH686_01405at 310.668 kb on + strand, within OH686_01405at 310.669 kb on - strand, within OH686_01405at 310.671 kb on + strand, within OH686_01405at 310.672 kb on - strand, within OH686_01405at 310.672 kb on - strand, within OH686_01405at 310.676 kb on - strand, within OH686_01405at 310.695 kb on + strand, within OH686_01405at 310.696 kb on - strand, within OH686_01405at 310.797 kb on + strand, within OH686_01405at 310.797 kb on + strand, within OH686_01405at 310.798 kb on - strand, within OH686_01405at 310.798 kb on - strand, within OH686_01405at 310.798 kb on - strand, within OH686_01405at 310.798 kb on - strand, within OH686_01405at 310.798 kb on - strand, within OH686_01405at 310.798 kb on - strand, within OH686_01405at 310.799 kb on + strand, within OH686_01405at 310.799 kb on + strand, within OH686_01405at 310.799 kb on + strand, within OH686_01405at 310.799 kb on + strand, within OH686_01405at 310.799 kb on + strand, within OH686_01405at 310.799 kb on + strand, within OH686_01405at 310.799 kb on + strand, within OH686_01405at 310.800 kb on - strand, within OH686_01405at 310.800 kb on - strand, within OH686_01405at 310.800 kb on - strand, within OH686_01405at 310.800 kb on - strand, within OH686_01405at 310.800 kb on - strand, within OH686_01405at 310.800 kb on - strand, within OH686_01405at 310.854 kb on + strand, within OH686_01405at 310.854 kb on + strand, within OH686_01405at 310.855 kb on - strand, within OH686_01405at 310.881 kb on + strand, within OH686_01405at 310.881 kb on + strand, within OH686_01405at 310.881 kb on + strand, within OH686_01405at 310.882 kb on - strand, within OH686_01405at 310.882 kb on - strand, within OH686_01405at 310.882 kb on - strand, within OH686_01405at 310.882 kb on - strand, within OH686_01405at 310.882 kb on - strand, within OH686_01405at 310.883 kb on + strand, within OH686_01405at 310.883 kb on + strand, within OH686_01405at 310.883 kb on + strand, within OH686_01405at 310.884 kb on - strand, within OH686_01405at 310.884 kb on - strand, within OH686_01405at 310.884 kb on - strand, within OH686_01405at 310.884 kb on - strand, within OH686_01405at 310.994 kb on + strandat 310.994 kb on + strandat 310.995 kb on - strandat 310.995 kb on - strandat 311.033 kb on - strandat 311.033 kb on - strandat 311.283 kb on + strand, within OH686_01410at 311.283 kb on + strand, within OH686_01410at 311.284 kb on - strand, within OH686_01410at 311.284 kb on - strand, within OH686_01410at 311.451 kb on + strandat 311.451 kb on + strandat 311.451 kb on + strandat 311.452 kb on - strandat 311.497 kb on - strandat 311.532 kb on + strandat 311.533 kb on - strandat 311.611 kb on + strand, within OH686_01415at 311.612 kb on - strand, within OH686_01415at 311.612 kb on - strand, within OH686_01415at 311.612 kb on - strand, within OH686_01415at 311.671 kb on + strand, within OH686_01415at 311.748 kb on - strand, within OH686_01415at 311.929 kb on + strand, within OH686_01415at 311.929 kb on + strand, within OH686_01415at 311.930 kb on - strand, within OH686_01415at 311.930 kb on - strand, within OH686_01415at 311.930 kb on - strand, within OH686_01415at 311.974 kb on + strand, within OH686_01415at 311.974 kb on + strand, within OH686_01415at 311.974 kb on + strand, within OH686_01415at 311.974 kb on + strand, within OH686_01415at 311.974 kb on + strand, within OH686_01415at 312.051 kb on + strandat 312.051 kb on + strandat 312.102 kb on + strandat 312.102 kb on + strandat 312.102 kb on + strandat 312.102 kb on + strandat 312.102 kb on + strandat 312.102 kb on + strandat 312.103 kb on - strandat 312.103 kb on - strandat 312.103 kb on - strandat 312.103 kb on - strandat 312.103 kb on - strandat 312.103 kb on - strandat 312.103 kb on - strandat 312.103 kb on - strandat 312.103 kb on - strandat 312.103 kb on - strandat 312.126 kb on + strandat 312.126 kb on + strandat 312.127 kb on - strandat 312.127 kb on - strandat 312.339 kb on + strand, within OH686_01420at 312.340 kb on - strand, within OH686_01420at 312.366 kb on + strand, within OH686_01420at 312.366 kb on + strand, within OH686_01420at 312.366 kb on + strand, within OH686_01420at 312.366 kb on + strand, within OH686_01420at 312.366 kb on + strand, within OH686_01420at 312.367 kb on - strand, within OH686_01420at 312.367 kb on - strand, within OH686_01420at 312.367 kb on - strand, within OH686_01420at 312.367 kb on - strand, within OH686_01420at 312.367 kb on - strand, within OH686_01420at 312.367 kb on - strand, within OH686_01420at 312.454 kb on + strand, within OH686_01420at 312.454 kb on + strand, within OH686_01420at 312.454 kb on + strand, within OH686_01420at 312.454 kb on + strand, within OH686_01420at 312.454 kb on + strand, within OH686_01420at 312.455 kb on - strand, within OH686_01420

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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310,020 + +1.1
310,021 - -1.4
310,134 + OH686_01400 0.21 -0.6
310,221 + OH686_01400 0.38 -1.5
310,293 - OH686_01400 0.52 -0.3
310,406 - OH686_01400 0.74 +0.2
310,446 - OH686_01400 0.82 +0.0
310,535 + +0.6
310,536 - -1.3
310,605 + -0.3
310,668 + OH686_01405 0.21 -0.4
310,668 + OH686_01405 0.21 +0.5
310,668 + OH686_01405 0.21 +0.4
310,668 + OH686_01405 0.21 -2.8
310,668 + OH686_01405 0.21 -1.2
310,669 - OH686_01405 0.22 +0.6
310,671 + OH686_01405 0.22 -0.3
310,672 - OH686_01405 0.22 -0.2
310,672 - OH686_01405 0.22 -0.4
310,676 - OH686_01405 0.23 +0.7
310,695 + OH686_01405 0.28 -2.6
310,696 - OH686_01405 0.28 +0.1
310,797 + OH686_01405 0.53 +0.0
310,797 + OH686_01405 0.53 -1.0
310,798 - OH686_01405 0.54 -0.8
310,798 - OH686_01405 0.54 +1.3
310,798 - OH686_01405 0.54 -0.1
310,798 - OH686_01405 0.54 -0.6
310,798 - OH686_01405 0.54 -0.4
310,798 - OH686_01405 0.54 +0.0
310,799 + OH686_01405 0.54 -0.4
310,799 + OH686_01405 0.54 -1.5
310,799 + OH686_01405 0.54 -0.4
310,799 + OH686_01405 0.54 +0.4
310,799 + OH686_01405 0.54 +0.0
310,799 + OH686_01405 0.54 -0.2
310,799 + OH686_01405 0.54 +1.6
310,800 - OH686_01405 0.54 -0.0
310,800 - OH686_01405 0.54 +0.1
310,800 - OH686_01405 0.54 -0.6
310,800 - OH686_01405 0.54 -0.6
310,800 - OH686_01405 0.54 +0.7
310,800 - OH686_01405 0.54 -0.3
310,854 + OH686_01405 0.67 -0.8
310,854 + OH686_01405 0.67 +0.0
310,855 - OH686_01405 0.68 -2.2
310,881 + OH686_01405 0.74 -0.4
310,881 + OH686_01405 0.74 +0.2
310,881 + OH686_01405 0.74 -0.4
310,882 - OH686_01405 0.74 +0.5
310,882 - OH686_01405 0.74 -0.2
310,882 - OH686_01405 0.74 -2.0
310,882 - OH686_01405 0.74 +0.1
310,882 - OH686_01405 0.74 -1.0
310,883 + OH686_01405 0.75 +0.1
310,883 + OH686_01405 0.75 -0.8
310,883 + OH686_01405 0.75 +0.8
310,884 - OH686_01405 0.75 +0.8
310,884 - OH686_01405 0.75 -0.2
310,884 - OH686_01405 0.75 +0.5
310,884 - OH686_01405 0.75 +0.0
310,994 + -0.8
310,994 + -0.0
310,995 - +0.6
310,995 - -0.2
311,033 - -2.0
311,033 - -1.2
311,283 + OH686_01410 0.56 +0.8
311,283 + OH686_01410 0.56 +1.5
311,284 - OH686_01410 0.57 +1.1
311,284 - OH686_01410 0.57 +0.1
311,451 + +0.4
311,451 + -0.8
311,451 + -0.0
311,452 - +1.0
311,497 - +0.3
311,532 + +0.3
311,533 - -0.4
311,611 + OH686_01415 0.18 +0.3
311,612 - OH686_01415 0.18 +0.8
311,612 - OH686_01415 0.18 -1.3
311,612 - OH686_01415 0.18 +0.6
311,671 + OH686_01415 0.30 -1.1
311,748 - OH686_01415 0.45 +0.6
311,929 + OH686_01415 0.80 +0.0
311,929 + OH686_01415 0.80 +1.4
311,930 - OH686_01415 0.80 -0.0
311,930 - OH686_01415 0.80 +0.6
311,930 - OH686_01415 0.80 +0.2
311,974 + OH686_01415 0.88 +0.0
311,974 + OH686_01415 0.88 +0.3
311,974 + OH686_01415 0.88 -2.0
311,974 + OH686_01415 0.88 +1.0
311,974 + OH686_01415 0.88 -1.4
312,051 + -0.5
312,051 + +1.2
312,102 + -0.5
312,102 + +0.7
312,102 + +0.3
312,102 + -1.0
312,102 + -0.6
312,102 + +0.3
312,103 - -0.3
312,103 - +1.0
312,103 - -0.2
312,103 - +0.2
312,103 - -0.0
312,103 - +0.4
312,103 - +0.7
312,103 - +0.5
312,103 - +0.2
312,103 - -0.2
312,126 + -0.4
312,126 + -0.2
312,127 - +0.1
312,127 - -0.1
312,339 + OH686_01420 0.34 +0.2
312,340 - OH686_01420 0.34 -1.2
312,366 + OH686_01420 0.37 +0.1
312,366 + OH686_01420 0.37 -1.2
312,366 + OH686_01420 0.37 +0.2
312,366 + OH686_01420 0.37 +1.0
312,366 + OH686_01420 0.37 -0.5
312,367 - OH686_01420 0.37 +0.3
312,367 - OH686_01420 0.37 -0.4
312,367 - OH686_01420 0.37 -0.0
312,367 - OH686_01420 0.37 -0.2
312,367 - OH686_01420 0.37 -0.3
312,367 - OH686_01420 0.37 -0.1
312,454 + OH686_01420 0.47 -0.1
312,454 + OH686_01420 0.47 -0.8
312,454 + OH686_01420 0.47 +0.2
312,454 + OH686_01420 0.47 +0.6
312,454 + OH686_01420 0.47 -1.3
312,455 - OH686_01420 0.47 -0.4

Or see this region's nucleotide sequence