Strain Fitness in Pseudomonas segetis P6 around MPMX49_01654

Experiment: Fluoride 6 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX49_01653 and MPMX49_01654 are separated by 222 nucleotidesMPMX49_01654 and MPMX49_01655 are separated by 6 nucleotides MPMX49_01653: MPMX49_01653 - 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD, at 1,756,158 to 1,757,516 _01653 MPMX49_01654: MPMX49_01654 - GTP pyrophosphokinase, at 1,757,739 to 1,759,985 _01654 MPMX49_01655: MPMX49_01655 - Nucleoside triphosphate pyrophosphohydrolase, at 1,759,992 to 1,760,822 _01655 Position (kb) 1757 1758 1759 1760Strain fitness (log2 ratio) -2 -1 0 1 2at 1756.789 kb on + strand, within MPMX49_01653at 1756.790 kb on - strand, within MPMX49_01653at 1756.794 kb on - strand, within MPMX49_01653at 1756.950 kb on + strand, within MPMX49_01653at 1756.950 kb on + strand, within MPMX49_01653at 1757.090 kb on - strand, within MPMX49_01653at 1757.226 kb on + strand, within MPMX49_01653at 1757.226 kb on + strand, within MPMX49_01653at 1757.227 kb on - strand, within MPMX49_01653at 1757.294 kb on - strand, within MPMX49_01653at 1757.368 kb on - strand, within MPMX49_01653at 1757.379 kb on - strand, within MPMX49_01653at 1757.414 kb on + strandat 1757.415 kb on - strandat 1757.415 kb on - strandat 1757.415 kb on - strandat 1757.514 kb on + strandat 1757.517 kb on + strandat 1757.553 kb on + strandat 1757.553 kb on + strandat 1757.553 kb on + strandat 1757.553 kb on + strandat 1757.553 kb on + strandat 1757.553 kb on + strandat 1757.554 kb on - strandat 1757.554 kb on - strandat 1757.554 kb on - strandat 1757.655 kb on + strandat 1757.682 kb on + strandat 1757.722 kb on + strandat 1758.010 kb on - strand, within MPMX49_01654at 1758.311 kb on + strand, within MPMX49_01654at 1758.315 kb on + strand, within MPMX49_01654at 1758.315 kb on + strand, within MPMX49_01654at 1758.315 kb on + strand, within MPMX49_01654at 1758.316 kb on - strand, within MPMX49_01654at 1758.316 kb on - strand, within MPMX49_01654at 1758.316 kb on - strand, within MPMX49_01654at 1758.316 kb on - strand, within MPMX49_01654at 1758.453 kb on + strand, within MPMX49_01654at 1758.453 kb on + strand, within MPMX49_01654at 1758.453 kb on + strand, within MPMX49_01654at 1758.454 kb on - strand, within MPMX49_01654at 1758.515 kb on + strand, within MPMX49_01654at 1758.536 kb on + strand, within MPMX49_01654at 1758.536 kb on + strand, within MPMX49_01654at 1758.536 kb on + strand, within MPMX49_01654at 1758.536 kb on + strand, within MPMX49_01654at 1758.536 kb on + strand, within MPMX49_01654at 1758.536 kb on + strand, within MPMX49_01654at 1758.536 kb on + strand, within MPMX49_01654at 1758.536 kb on + strand, within MPMX49_01654at 1758.537 kb on - strand, within MPMX49_01654at 1758.537 kb on - strand, within MPMX49_01654at 1758.537 kb on - strand, within MPMX49_01654at 1758.537 kb on - strand, within MPMX49_01654at 1758.537 kb on - strand, within MPMX49_01654at 1758.537 kb on - strand, within MPMX49_01654at 1758.541 kb on - strand, within MPMX49_01654at 1758.591 kb on + strand, within MPMX49_01654at 1758.591 kb on + strand, within MPMX49_01654at 1758.592 kb on - strand, within MPMX49_01654at 1758.592 kb on - strand, within MPMX49_01654at 1758.639 kb on + strand, within MPMX49_01654at 1758.640 kb on - strand, within MPMX49_01654at 1758.699 kb on + strand, within MPMX49_01654at 1758.700 kb on - strand, within MPMX49_01654at 1758.700 kb on - strand, within MPMX49_01654at 1758.751 kb on + strand, within MPMX49_01654at 1758.752 kb on - strand, within MPMX49_01654at 1758.752 kb on - strand, within MPMX49_01654at 1758.752 kb on - strand, within MPMX49_01654at 1758.788 kb on + strand, within MPMX49_01654at 1758.788 kb on + strand, within MPMX49_01654at 1758.788 kb on + strand, within MPMX49_01654at 1758.789 kb on - strand, within MPMX49_01654at 1758.789 kb on - strand, within MPMX49_01654at 1758.789 kb on - strand, within MPMX49_01654at 1758.840 kb on + strand, within MPMX49_01654at 1758.840 kb on + strand, within MPMX49_01654at 1758.842 kb on + strand, within MPMX49_01654at 1758.842 kb on + strand, within MPMX49_01654at 1758.876 kb on + strand, within MPMX49_01654at 1758.987 kb on + strand, within MPMX49_01654at 1758.987 kb on + strand, within MPMX49_01654at 1758.988 kb on - strand, within MPMX49_01654at 1758.988 kb on - strand, within MPMX49_01654at 1758.988 kb on - strand, within MPMX49_01654at 1758.988 kb on - strand, within MPMX49_01654at 1758.988 kb on - strand, within MPMX49_01654at 1758.988 kb on - strand, within MPMX49_01654at 1759.060 kb on + strand, within MPMX49_01654at 1759.060 kb on + strand, within MPMX49_01654at 1759.060 kb on + strand, within MPMX49_01654at 1759.060 kb on + strand, within MPMX49_01654at 1759.060 kb on + strand, within MPMX49_01654at 1759.060 kb on + strand, within MPMX49_01654at 1759.064 kb on + strand, within MPMX49_01654at 1759.064 kb on + strand, within MPMX49_01654at 1759.064 kb on + strand, within MPMX49_01654at 1759.064 kb on + strand, within MPMX49_01654at 1759.100 kb on - strand, within MPMX49_01654at 1759.100 kb on - strand, within MPMX49_01654at 1759.126 kb on - strand, within MPMX49_01654at 1759.213 kb on - strand, within MPMX49_01654at 1759.213 kb on - strand, within MPMX49_01654at 1759.315 kb on + strand, within MPMX49_01654at 1759.315 kb on + strand, within MPMX49_01654at 1759.316 kb on - strand, within MPMX49_01654at 1759.435 kb on + strand, within MPMX49_01654at 1759.436 kb on - strand, within MPMX49_01654at 1759.490 kb on + strand, within MPMX49_01654at 1759.491 kb on - strand, within MPMX49_01654at 1759.491 kb on - strand, within MPMX49_01654at 1759.491 kb on - strand, within MPMX49_01654at 1759.535 kb on + strand, within MPMX49_01654at 1759.617 kb on + strand, within MPMX49_01654at 1759.618 kb on - strand, within MPMX49_01654at 1759.618 kb on - strand, within MPMX49_01654at 1759.767 kb on + strandat 1759.767 kb on + strandat 1759.768 kb on - strandat 1759.768 kb on - strandat 1759.804 kb on + strandat 1759.874 kb on + strandat 1759.874 kb on + strandat 1759.991 kb on + strandat 1759.991 kb on + strandat 1759.991 kb on + strandat 1759.991 kb on + strandat 1759.992 kb on - strandat 1759.992 kb on - strandat 1759.992 kb on - strandat 1759.992 kb on - strandat 1759.995 kb on + strandat 1759.996 kb on - strandat 1760.002 kb on + strandat 1760.014 kb on + strandat 1760.014 kb on + strandat 1760.014 kb on + strandat 1760.014 kb on + strandat 1760.014 kb on + strandat 1760.014 kb on + strandat 1760.015 kb on - strandat 1760.015 kb on - strandat 1760.015 kb on - strandat 1760.022 kb on - strandat 1760.076 kb on + strand, within MPMX49_01655at 1760.086 kb on + strand, within MPMX49_01655at 1760.094 kb on + strand, within MPMX49_01655at 1760.096 kb on + strand, within MPMX49_01655at 1760.096 kb on + strand, within MPMX49_01655at 1760.096 kb on + strand, within MPMX49_01655at 1760.096 kb on + strand, within MPMX49_01655at 1760.097 kb on - strand, within MPMX49_01655at 1760.112 kb on + strand, within MPMX49_01655at 1760.194 kb on - strand, within MPMX49_01655at 1760.196 kb on + strand, within MPMX49_01655at 1760.197 kb on - strand, within MPMX49_01655at 1760.197 kb on - strand, within MPMX49_01655at 1760.197 kb on - strand, within MPMX49_01655at 1760.307 kb on + strand, within MPMX49_01655at 1760.308 kb on - strand, within MPMX49_01655at 1760.308 kb on - strand, within MPMX49_01655at 1760.308 kb on - strand, within MPMX49_01655at 1760.308 kb on - strand, within MPMX49_01655at 1760.431 kb on + strand, within MPMX49_01655at 1760.431 kb on + strand, within MPMX49_01655at 1760.431 kb on + strand, within MPMX49_01655at 1760.432 kb on - strand, within MPMX49_01655at 1760.435 kb on + strand, within MPMX49_01655at 1760.435 kb on + strand, within MPMX49_01655at 1760.436 kb on - strand, within MPMX49_01655at 1760.831 kb on - strandat 1760.841 kb on + strandat 1760.842 kb on - strandat 1760.869 kb on + strandat 1760.869 kb on + strandat 1760.929 kb on + strandat 1760.944 kb on + strandat 1760.944 kb on + strandat 1760.945 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Fluoride 6 mM
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1,756,789 + MPMX49_01653 0.46 +0.9
1,756,790 - MPMX49_01653 0.47 -0.4
1,756,794 - MPMX49_01653 0.47 +0.0
1,756,950 + MPMX49_01653 0.58 -2.6
1,756,950 + MPMX49_01653 0.58 -0.8
1,757,090 - MPMX49_01653 0.69 +0.5
1,757,226 + MPMX49_01653 0.79 -0.2
1,757,226 + MPMX49_01653 0.79 -0.9
1,757,227 - MPMX49_01653 0.79 +0.7
1,757,294 - MPMX49_01653 0.84 +0.3
1,757,368 - MPMX49_01653 0.89 -0.2
1,757,379 - MPMX49_01653 0.90 +0.1
1,757,414 + +0.5
1,757,415 - -1.1
1,757,415 - -0.4
1,757,415 - -1.3
1,757,514 + -0.1
1,757,517 + -0.3
1,757,553 + -0.1
1,757,553 + -1.6
1,757,553 + -0.6
1,757,553 + -1.3
1,757,553 + +0.6
1,757,553 + -0.2
1,757,554 - -1.0
1,757,554 - +0.2
1,757,554 - +0.0
1,757,655 + -1.0
1,757,682 + +0.8
1,757,722 + -1.1
1,758,010 - MPMX49_01654 0.12 +0.3
1,758,311 + MPMX49_01654 0.25 +0.6
1,758,315 + MPMX49_01654 0.26 +1.0
1,758,315 + MPMX49_01654 0.26 -0.5
1,758,315 + MPMX49_01654 0.26 -1.6
1,758,316 - MPMX49_01654 0.26 +0.5
1,758,316 - MPMX49_01654 0.26 +0.8
1,758,316 - MPMX49_01654 0.26 -0.3
1,758,316 - MPMX49_01654 0.26 +0.3
1,758,453 + MPMX49_01654 0.32 -1.2
1,758,453 + MPMX49_01654 0.32 +0.6
1,758,453 + MPMX49_01654 0.32 +0.9
1,758,454 - MPMX49_01654 0.32 -0.8
1,758,515 + MPMX49_01654 0.35 +0.4
1,758,536 + MPMX49_01654 0.35 +0.5
1,758,536 + MPMX49_01654 0.35 -2.2
1,758,536 + MPMX49_01654 0.35 +0.4
1,758,536 + MPMX49_01654 0.35 -0.1
1,758,536 + MPMX49_01654 0.35 +2.4
1,758,536 + MPMX49_01654 0.35 +0.6
1,758,536 + MPMX49_01654 0.35 +0.2
1,758,536 + MPMX49_01654 0.35 +0.6
1,758,537 - MPMX49_01654 0.36 +0.6
1,758,537 - MPMX49_01654 0.36 +0.9
1,758,537 - MPMX49_01654 0.36 -0.1
1,758,537 - MPMX49_01654 0.36 +0.8
1,758,537 - MPMX49_01654 0.36 +0.8
1,758,537 - MPMX49_01654 0.36 +1.0
1,758,541 - MPMX49_01654 0.36 +0.1
1,758,591 + MPMX49_01654 0.38 +0.2
1,758,591 + MPMX49_01654 0.38 +0.1
1,758,592 - MPMX49_01654 0.38 +0.0
1,758,592 - MPMX49_01654 0.38 +0.3
1,758,639 + MPMX49_01654 0.40 +1.3
1,758,640 - MPMX49_01654 0.40 +0.1
1,758,699 + MPMX49_01654 0.43 -0.1
1,758,700 - MPMX49_01654 0.43 -0.0
1,758,700 - MPMX49_01654 0.43 +1.1
1,758,751 + MPMX49_01654 0.45 +0.2
1,758,752 - MPMX49_01654 0.45 +0.8
1,758,752 - MPMX49_01654 0.45 +0.6
1,758,752 - MPMX49_01654 0.45 +1.9
1,758,788 + MPMX49_01654 0.47 +0.7
1,758,788 + MPMX49_01654 0.47 +0.5
1,758,788 + MPMX49_01654 0.47 +1.0
1,758,789 - MPMX49_01654 0.47 +0.2
1,758,789 - MPMX49_01654 0.47 -0.1
1,758,789 - MPMX49_01654 0.47 +1.3
1,758,840 + MPMX49_01654 0.49 +1.2
1,758,840 + MPMX49_01654 0.49 -1.3
1,758,842 + MPMX49_01654 0.49 -2.1
1,758,842 + MPMX49_01654 0.49 +0.7
1,758,876 + MPMX49_01654 0.51 +0.9
1,758,987 + MPMX49_01654 0.56 +0.5
1,758,987 + MPMX49_01654 0.56 -0.3
1,758,988 - MPMX49_01654 0.56 +0.7
1,758,988 - MPMX49_01654 0.56 +0.4
1,758,988 - MPMX49_01654 0.56 +0.7
1,758,988 - MPMX49_01654 0.56 +0.0
1,758,988 - MPMX49_01654 0.56 +0.1
1,758,988 - MPMX49_01654 0.56 +0.3
1,759,060 + MPMX49_01654 0.59 -0.1
1,759,060 + MPMX49_01654 0.59 +0.5
1,759,060 + MPMX49_01654 0.59 +0.1
1,759,060 + MPMX49_01654 0.59 +0.4
1,759,060 + MPMX49_01654 0.59 +0.4
1,759,060 + MPMX49_01654 0.59 +0.6
1,759,064 + MPMX49_01654 0.59 +0.8
1,759,064 + MPMX49_01654 0.59 +0.2
1,759,064 + MPMX49_01654 0.59 -0.4
1,759,064 + MPMX49_01654 0.59 +0.6
1,759,100 - MPMX49_01654 0.61 +1.1
1,759,100 - MPMX49_01654 0.61 +0.1
1,759,126 - MPMX49_01654 0.62 +1.0
1,759,213 - MPMX49_01654 0.66 +0.1
1,759,213 - MPMX49_01654 0.66 +1.0
1,759,315 + MPMX49_01654 0.70 +0.3
1,759,315 + MPMX49_01654 0.70 +0.2
1,759,316 - MPMX49_01654 0.70 +0.4
1,759,435 + MPMX49_01654 0.75 -0.1
1,759,436 - MPMX49_01654 0.76 +0.8
1,759,490 + MPMX49_01654 0.78 -0.6
1,759,491 - MPMX49_01654 0.78 -0.1
1,759,491 - MPMX49_01654 0.78 +0.0
1,759,491 - MPMX49_01654 0.78 +0.3
1,759,535 + MPMX49_01654 0.80 +0.5
1,759,617 + MPMX49_01654 0.84 -0.3
1,759,618 - MPMX49_01654 0.84 +0.2
1,759,618 - MPMX49_01654 0.84 -0.8
1,759,767 + -0.6
1,759,767 + -0.5
1,759,768 - -0.7
1,759,768 - -2.2
1,759,804 + +0.2
1,759,874 + +0.4
1,759,874 + +0.1
1,759,991 + -0.8
1,759,991 + -1.0
1,759,991 + -0.6
1,759,991 + -0.1
1,759,992 - +0.4
1,759,992 - -1.3
1,759,992 - -0.4
1,759,992 - +0.3
1,759,995 + -0.5
1,759,996 - -1.0
1,760,002 + +0.1
1,760,014 + +0.0
1,760,014 + +0.5
1,760,014 + -0.6
1,760,014 + +0.0
1,760,014 + -2.5
1,760,014 + -0.1
1,760,015 - +0.3
1,760,015 - -0.2
1,760,015 - +1.2
1,760,022 - -0.5
1,760,076 + MPMX49_01655 0.10 +1.0
1,760,086 + MPMX49_01655 0.11 +1.2
1,760,094 + MPMX49_01655 0.12 +0.5
1,760,096 + MPMX49_01655 0.13 +0.1
1,760,096 + MPMX49_01655 0.13 +0.2
1,760,096 + MPMX49_01655 0.13 -2.0
1,760,096 + MPMX49_01655 0.13 -1.2
1,760,097 - MPMX49_01655 0.13 +0.2
1,760,112 + MPMX49_01655 0.14 -1.4
1,760,194 - MPMX49_01655 0.24 -1.3
1,760,196 + MPMX49_01655 0.25 +0.0
1,760,197 - MPMX49_01655 0.25 -0.9
1,760,197 - MPMX49_01655 0.25 -0.1
1,760,197 - MPMX49_01655 0.25 -0.4
1,760,307 + MPMX49_01655 0.38 +0.2
1,760,308 - MPMX49_01655 0.38 -1.2
1,760,308 - MPMX49_01655 0.38 +0.2
1,760,308 - MPMX49_01655 0.38 +0.8
1,760,308 - MPMX49_01655 0.38 -0.6
1,760,431 + MPMX49_01655 0.53 -0.5
1,760,431 + MPMX49_01655 0.53 +0.4
1,760,431 + MPMX49_01655 0.53 -2.0
1,760,432 - MPMX49_01655 0.53 -0.4
1,760,435 + MPMX49_01655 0.53 -0.2
1,760,435 + MPMX49_01655 0.53 +0.4
1,760,436 - MPMX49_01655 0.53 +0.1
1,760,831 - -2.0
1,760,841 + +0.3
1,760,842 - +0.5
1,760,869 + +0.4
1,760,869 + +0.3
1,760,929 + +2.2
1,760,944 + -0.7
1,760,944 + -0.1
1,760,945 - +0.4

Or see this region's nucleotide sequence