Experiment: Fumarate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_02145 and PS417_02150 are separated by 50 nucleotides PS417_02150 and PS417_02155 are separated by 243 nucleotides
PS417_02145: PS417_02145 - potassium transporter KefA, at 477,221 to 480,559
_02145
PS417_02150: PS417_02150 - potassium/proton antiporter, at 480,610 to 482,352
_02150
PS417_02155: PS417_02155 - chemotaxis protein, at 482,596 to 484,221
_02155
Position (kb) 480
481
482
483 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 479.712 kb on + strand, within PS417_02145 at 479.713 kb on - strand, within PS417_02145 at 479.891 kb on + strand, within PS417_02145 at 479.891 kb on + strand, within PS417_02145 at 479.891 kb on + strand, within PS417_02145 at 479.892 kb on - strand, within PS417_02145 at 480.373 kb on - strand at 480.373 kb on - strand at 480.373 kb on - strand at 480.554 kb on - strand at 480.559 kb on + strand at 480.559 kb on + strand at 480.611 kb on + strand at 480.982 kb on - strand, within PS417_02150 at 481.265 kb on + strand, within PS417_02150 at 481.266 kb on - strand, within PS417_02150 at 481.350 kb on + strand, within PS417_02150 at 481.471 kb on + strand, within PS417_02150 at 481.472 kb on - strand, within PS417_02150 at 481.513 kb on - strand, within PS417_02150 at 481.513 kb on - strand, within PS417_02150 at 481.548 kb on + strand, within PS417_02150 at 481.549 kb on - strand, within PS417_02150 at 481.689 kb on - strand, within PS417_02150 at 481.689 kb on - strand, within PS417_02150 at 481.963 kb on - strand, within PS417_02150 at 482.187 kb on + strand at 482.251 kb on + strand at 482.252 kb on - strand at 482.253 kb on + strand at 482.253 kb on + strand at 482.254 kb on - strand at 482.254 kb on - strand at 482.359 kb on + strand at 482.420 kb on + strand at 482.598 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fumarate (C) remove 479,712 + PS417_02145 0.75 -2.4 479,713 - PS417_02145 0.75 +1.1 479,891 + PS417_02145 0.80 -0.9 479,891 + PS417_02145 0.80 +0.6 479,891 + PS417_02145 0.80 +0.5 479,892 - PS417_02145 0.80 +0.2 480,373 - -1.4 480,373 - -1.2 480,373 - -1.1 480,554 - +0.8 480,559 + +0.1 480,559 + +0.4 480,611 + +0.0 480,982 - PS417_02150 0.21 -1.2 481,265 + PS417_02150 0.38 -0.9 481,266 - PS417_02150 0.38 -0.3 481,350 + PS417_02150 0.42 -0.9 481,471 + PS417_02150 0.49 -0.9 481,472 - PS417_02150 0.49 -0.8 481,513 - PS417_02150 0.52 -0.2 481,513 - PS417_02150 0.52 -1.7 481,548 + PS417_02150 0.54 -0.2 481,549 - PS417_02150 0.54 -0.5 481,689 - PS417_02150 0.62 -0.4 481,689 - PS417_02150 0.62 -0.6 481,963 - PS417_02150 0.78 +0.3 482,187 + -1.1 482,251 + -1.2 482,252 - -2.2 482,253 + -1.0 482,253 + -0.6 482,254 - -4.3 482,254 - -0.0 482,359 + +0.3 482,420 + -0.8 482,598 - +0.1
Or see this region's nucleotide sequence