Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_4570

Experiment: m.b. Cisplatin 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_4569 and Echvi_4570 are separated by 82 nucleotidesEchvi_4570 and Echvi_4571 are separated by 434 nucleotidesEchvi_4571 and Echvi_4572 are separated by 23 nucleotides Echvi_4569: Echvi_4569 - Uncharacterized iron-regulated membrane protein, at 5,471,746 to 5,472,960 _4569 Echvi_4570: Echvi_4570 - Peroxiredoxin, at 5,473,043 to 5,474,152 _4570 Echvi_4571: Echvi_4571 - hypothetical protein, at 5,474,587 to 5,474,712 _4571 Echvi_4572: Echvi_4572 - PAS domain S-box, at 5,474,736 to 5,478,725 _4572 Position (kb) 5473 5474 5475Strain fitness (log2 ratio) -2 -1 0 1at 5472.061 kb on + strand, within Echvi_4569at 5472.082 kb on + strand, within Echvi_4569at 5472.098 kb on + strand, within Echvi_4569at 5472.098 kb on + strand, within Echvi_4569at 5472.106 kb on + strand, within Echvi_4569at 5472.119 kb on + strand, within Echvi_4569at 5472.120 kb on - strand, within Echvi_4569at 5472.182 kb on + strand, within Echvi_4569at 5472.182 kb on + strand, within Echvi_4569at 5472.183 kb on - strand, within Echvi_4569at 5472.183 kb on - strand, within Echvi_4569at 5472.198 kb on + strand, within Echvi_4569at 5472.198 kb on + strand, within Echvi_4569at 5472.199 kb on - strand, within Echvi_4569at 5472.201 kb on - strand, within Echvi_4569at 5472.223 kb on - strand, within Echvi_4569at 5472.345 kb on + strand, within Echvi_4569at 5472.349 kb on + strand, within Echvi_4569at 5472.377 kb on - strand, within Echvi_4569at 5472.421 kb on + strand, within Echvi_4569at 5472.422 kb on - strand, within Echvi_4569at 5472.556 kb on - strand, within Echvi_4569at 5472.556 kb on - strand, within Echvi_4569at 5472.556 kb on - strand, within Echvi_4569at 5472.556 kb on - strand, within Echvi_4569at 5472.638 kb on + strand, within Echvi_4569at 5472.645 kb on - strand, within Echvi_4569at 5472.688 kb on + strand, within Echvi_4569at 5472.772 kb on + strand, within Echvi_4569at 5472.772 kb on + strand, within Echvi_4569at 5472.773 kb on - strand, within Echvi_4569at 5472.981 kb on - strandat 5473.003 kb on + strandat 5473.004 kb on - strandat 5473.011 kb on + strandat 5473.012 kb on - strandat 5473.059 kb on + strandat 5473.179 kb on - strand, within Echvi_4570at 5473.211 kb on - strand, within Echvi_4570at 5473.211 kb on - strand, within Echvi_4570at 5473.221 kb on - strand, within Echvi_4570at 5473.268 kb on + strand, within Echvi_4570at 5473.268 kb on + strand, within Echvi_4570at 5473.268 kb on + strand, within Echvi_4570at 5473.269 kb on - strand, within Echvi_4570at 5473.289 kb on + strand, within Echvi_4570at 5473.289 kb on + strand, within Echvi_4570at 5473.289 kb on + strand, within Echvi_4570at 5473.290 kb on - strand, within Echvi_4570at 5473.290 kb on - strand, within Echvi_4570at 5473.290 kb on - strand, within Echvi_4570at 5473.301 kb on + strand, within Echvi_4570at 5473.301 kb on + strand, within Echvi_4570at 5473.302 kb on - strand, within Echvi_4570at 5473.302 kb on - strand, within Echvi_4570at 5473.302 kb on - strand, within Echvi_4570at 5473.400 kb on - strand, within Echvi_4570at 5473.418 kb on - strand, within Echvi_4570at 5473.455 kb on - strand, within Echvi_4570at 5473.455 kb on - strand, within Echvi_4570at 5473.459 kb on + strand, within Echvi_4570at 5473.473 kb on + strand, within Echvi_4570at 5473.488 kb on - strand, within Echvi_4570at 5473.496 kb on + strand, within Echvi_4570at 5473.517 kb on - strand, within Echvi_4570at 5473.607 kb on + strand, within Echvi_4570at 5473.656 kb on - strand, within Echvi_4570at 5473.684 kb on + strand, within Echvi_4570at 5473.684 kb on + strand, within Echvi_4570at 5473.685 kb on - strand, within Echvi_4570at 5473.685 kb on - strand, within Echvi_4570at 5473.688 kb on + strand, within Echvi_4570at 5473.688 kb on + strand, within Echvi_4570at 5473.689 kb on - strand, within Echvi_4570at 5473.689 kb on - strand, within Echvi_4570at 5473.818 kb on + strand, within Echvi_4570at 5473.843 kb on - strand, within Echvi_4570at 5473.943 kb on + strand, within Echvi_4570at 5473.943 kb on + strand, within Echvi_4570at 5473.943 kb on + strand, within Echvi_4570at 5473.943 kb on + strand, within Echvi_4570at 5473.943 kb on + strand, within Echvi_4570at 5473.943 kb on + strand, within Echvi_4570at 5473.943 kb on + strand, within Echvi_4570at 5473.944 kb on - strand, within Echvi_4570at 5473.944 kb on - strand, within Echvi_4570at 5473.946 kb on - strand, within Echvi_4570at 5474.045 kb on + strandat 5474.046 kb on - strandat 5474.046 kb on - strandat 5474.118 kb on - strandat 5474.130 kb on + strandat 5474.131 kb on - strandat 5474.271 kb on + strandat 5474.276 kb on + strandat 5474.277 kb on - strandat 5474.277 kb on - strandat 5474.281 kb on + strandat 5474.297 kb on - strandat 5474.301 kb on + strandat 5474.301 kb on + strandat 5474.301 kb on + strandat 5474.302 kb on - strandat 5474.302 kb on - strandat 5474.330 kb on - strandat 5474.360 kb on + strandat 5474.423 kb on + strandat 5474.423 kb on + strandat 5474.434 kb on + strandat 5474.521 kb on - strandat 5474.566 kb on + strandat 5474.571 kb on + strandat 5474.572 kb on - strandat 5474.572 kb on - strandat 5474.590 kb on + strandat 5474.591 kb on - strandat 5474.746 kb on + strandat 5474.746 kb on + strandat 5474.747 kb on - strandat 5474.747 kb on - strandat 5474.750 kb on + strandat 5474.751 kb on - strandat 5474.757 kb on - strandat 5474.774 kb on + strandat 5474.775 kb on - strandat 5474.818 kb on - strandat 5474.878 kb on + strandat 5474.957 kb on + strandat 5474.958 kb on - strandat 5474.999 kb on + strandat 5475.000 kb on - strandat 5475.062 kb on + strandat 5475.062 kb on + strandat 5475.100 kb on + strandat 5475.107 kb on + strandat 5475.131 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml
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5,472,061 + Echvi_4569 0.26 -0.1
5,472,082 + Echvi_4569 0.28 +0.6
5,472,098 + Echvi_4569 0.29 +0.8
5,472,098 + Echvi_4569 0.29 -0.6
5,472,106 + Echvi_4569 0.30 -0.1
5,472,119 + Echvi_4569 0.31 +0.3
5,472,120 - Echvi_4569 0.31 -0.3
5,472,182 + Echvi_4569 0.36 -0.4
5,472,182 + Echvi_4569 0.36 +1.7
5,472,183 - Echvi_4569 0.36 -0.4
5,472,183 - Echvi_4569 0.36 -0.8
5,472,198 + Echvi_4569 0.37 -0.7
5,472,198 + Echvi_4569 0.37 -0.9
5,472,199 - Echvi_4569 0.37 +0.6
5,472,201 - Echvi_4569 0.37 +0.8
5,472,223 - Echvi_4569 0.39 -2.7
5,472,345 + Echvi_4569 0.49 +1.0
5,472,349 + Echvi_4569 0.50 +0.8
5,472,377 - Echvi_4569 0.52 +0.8
5,472,421 + Echvi_4569 0.56 +0.1
5,472,422 - Echvi_4569 0.56 +1.5
5,472,556 - Echvi_4569 0.67 +0.3
5,472,556 - Echvi_4569 0.67 -0.0
5,472,556 - Echvi_4569 0.67 -2.1
5,472,556 - Echvi_4569 0.67 +1.5
5,472,638 + Echvi_4569 0.73 +0.4
5,472,645 - Echvi_4569 0.74 -1.3
5,472,688 + Echvi_4569 0.78 +0.1
5,472,772 + Echvi_4569 0.84 +0.3
5,472,772 + Echvi_4569 0.84 -0.3
5,472,773 - Echvi_4569 0.85 +0.2
5,472,981 - +0.7
5,473,003 + -0.3
5,473,004 - -1.3
5,473,011 + +0.5
5,473,012 - -0.4
5,473,059 + -0.8
5,473,179 - Echvi_4570 0.12 -0.2
5,473,211 - Echvi_4570 0.15 -0.2
5,473,211 - Echvi_4570 0.15 +1.0
5,473,221 - Echvi_4570 0.16 +0.1
5,473,268 + Echvi_4570 0.20 -0.3
5,473,268 + Echvi_4570 0.20 -0.1
5,473,268 + Echvi_4570 0.20 +0.4
5,473,269 - Echvi_4570 0.20 -1.2
5,473,289 + Echvi_4570 0.22 +0.6
5,473,289 + Echvi_4570 0.22 +1.2
5,473,289 + Echvi_4570 0.22 -0.5
5,473,290 - Echvi_4570 0.22 -0.4
5,473,290 - Echvi_4570 0.22 -1.1
5,473,290 - Echvi_4570 0.22 -0.7
5,473,301 + Echvi_4570 0.23 -0.1
5,473,301 + Echvi_4570 0.23 -0.7
5,473,302 - Echvi_4570 0.23 +0.5
5,473,302 - Echvi_4570 0.23 -0.1
5,473,302 - Echvi_4570 0.23 -0.1
5,473,400 - Echvi_4570 0.32 -1.1
5,473,418 - Echvi_4570 0.34 +0.0
5,473,455 - Echvi_4570 0.37 +0.8
5,473,455 - Echvi_4570 0.37 +0.5
5,473,459 + Echvi_4570 0.37 -2.2
5,473,473 + Echvi_4570 0.39 +0.3
5,473,488 - Echvi_4570 0.40 -1.0
5,473,496 + Echvi_4570 0.41 -0.9
5,473,517 - Echvi_4570 0.43 -0.9
5,473,607 + Echvi_4570 0.51 -0.8
5,473,656 - Echvi_4570 0.55 -0.5
5,473,684 + Echvi_4570 0.58 +0.0
5,473,684 + Echvi_4570 0.58 +0.5
5,473,685 - Echvi_4570 0.58 -2.1
5,473,685 - Echvi_4570 0.58 -0.5
5,473,688 + Echvi_4570 0.58 -0.4
5,473,688 + Echvi_4570 0.58 -0.9
5,473,689 - Echvi_4570 0.58 +0.8
5,473,689 - Echvi_4570 0.58 -1.8
5,473,818 + Echvi_4570 0.70 -1.1
5,473,843 - Echvi_4570 0.72 -0.5
5,473,943 + Echvi_4570 0.81 -0.7
5,473,943 + Echvi_4570 0.81 -0.3
5,473,943 + Echvi_4570 0.81 +0.3
5,473,943 + Echvi_4570 0.81 +1.5
5,473,943 + Echvi_4570 0.81 +0.3
5,473,943 + Echvi_4570 0.81 +0.5
5,473,943 + Echvi_4570 0.81 +0.8
5,473,944 - Echvi_4570 0.81 +0.2
5,473,944 - Echvi_4570 0.81 -1.0
5,473,946 - Echvi_4570 0.81 +0.4
5,474,045 + +0.0
5,474,046 - +0.6
5,474,046 - -1.0
5,474,118 - -0.4
5,474,130 + +0.0
5,474,131 - -0.5
5,474,271 + +0.0
5,474,276 + +0.6
5,474,277 - -0.4
5,474,277 - +0.8
5,474,281 + +1.1
5,474,297 - +0.4
5,474,301 + +1.5
5,474,301 + -0.4
5,474,301 + -0.1
5,474,302 - +1.2
5,474,302 - -0.1
5,474,330 - -0.5
5,474,360 + +0.3
5,474,423 + -0.8
5,474,423 + -0.4
5,474,434 + +0.3
5,474,521 - -0.9
5,474,566 + +0.3
5,474,571 + -0.4
5,474,572 - +1.3
5,474,572 - -1.1
5,474,590 + +0.5
5,474,591 - +0.8
5,474,746 + -0.8
5,474,746 + -0.6
5,474,747 - -1.1
5,474,747 - +0.3
5,474,750 + -0.0
5,474,751 - +0.1
5,474,757 - +0.0
5,474,774 + +0.6
5,474,775 - -0.0
5,474,818 - -0.7
5,474,878 + -0.1
5,474,957 + +0.2
5,474,958 - +0.3
5,474,999 + -0.1
5,475,000 - +0.2
5,475,062 + +0.4
5,475,062 + -0.8
5,475,100 + -0.2
5,475,107 + -0.4
5,475,131 + -0.1

Or see this region's nucleotide sequence