Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_4020

Experiment: m.b. Cisplatin 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_4019 and Echvi_4020 are separated by 191 nucleotidesEchvi_4020 and Echvi_4021 are separated by 354 nucleotides Echvi_4019: Echvi_4019 - oxygen-independent coproporphyrinogen III oxidase, at 4,813,268 to 4,814,617 _4019 Echvi_4020: Echvi_4020 - hypothetical protein, at 4,814,809 to 4,815,201 _4020 Echvi_4021: Echvi_4021 - Cytochrome c peroxidase, at 4,815,556 to 4,816,680 _4021 Position (kb) 4814 4815 4816Strain fitness (log2 ratio) -2 -1 0 1 2at 4813.819 kb on + strand, within Echvi_4019at 4813.819 kb on + strand, within Echvi_4019at 4813.819 kb on + strand, within Echvi_4019at 4813.852 kb on + strand, within Echvi_4019at 4813.852 kb on + strand, within Echvi_4019at 4813.853 kb on - strand, within Echvi_4019at 4813.853 kb on - strand, within Echvi_4019at 4813.853 kb on - strand, within Echvi_4019at 4813.853 kb on - strand, within Echvi_4019at 4813.853 kb on - strand, within Echvi_4019at 4813.856 kb on + strand, within Echvi_4019at 4813.856 kb on + strand, within Echvi_4019at 4813.857 kb on - strand, within Echvi_4019at 4813.857 kb on - strand, within Echvi_4019at 4813.857 kb on - strand, within Echvi_4019at 4813.857 kb on - strand, within Echvi_4019at 4813.857 kb on - strand, within Echvi_4019at 4813.857 kb on - strand, within Echvi_4019at 4813.857 kb on - strand, within Echvi_4019at 4813.857 kb on - strand, within Echvi_4019at 4813.904 kb on + strand, within Echvi_4019at 4813.905 kb on - strand, within Echvi_4019at 4813.905 kb on - strand, within Echvi_4019at 4813.961 kb on - strand, within Echvi_4019at 4813.961 kb on - strand, within Echvi_4019at 4813.988 kb on + strand, within Echvi_4019at 4813.989 kb on - strand, within Echvi_4019at 4813.989 kb on - strand, within Echvi_4019at 4813.989 kb on - strand, within Echvi_4019at 4813.995 kb on - strand, within Echvi_4019at 4813.995 kb on - strand, within Echvi_4019at 4814.005 kb on - strand, within Echvi_4019at 4814.046 kb on + strand, within Echvi_4019at 4814.205 kb on - strand, within Echvi_4019at 4814.205 kb on - strand, within Echvi_4019at 4814.206 kb on + strand, within Echvi_4019at 4814.264 kb on + strand, within Echvi_4019at 4814.274 kb on - strand, within Echvi_4019at 4814.304 kb on - strand, within Echvi_4019at 4814.360 kb on - strand, within Echvi_4019at 4814.360 kb on - strand, within Echvi_4019at 4814.360 kb on - strand, within Echvi_4019at 4814.429 kb on - strand, within Echvi_4019at 4814.545 kb on + strandat 4814.567 kb on - strandat 4814.567 kb on - strandat 4814.611 kb on + strandat 4814.615 kb on + strandat 4814.629 kb on + strandat 4814.629 kb on + strandat 4814.736 kb on + strandat 4814.757 kb on + strandat 4814.829 kb on + strandat 4814.829 kb on + strandat 4814.829 kb on + strandat 4814.829 kb on + strandat 4814.830 kb on - strandat 4814.830 kb on - strandat 4814.831 kb on + strandat 4814.832 kb on - strandat 4814.862 kb on + strand, within Echvi_4020at 4814.890 kb on + strand, within Echvi_4020at 4814.890 kb on + strand, within Echvi_4020at 4814.890 kb on + strand, within Echvi_4020at 4814.890 kb on + strand, within Echvi_4020at 4814.891 kb on - strand, within Echvi_4020at 4814.891 kb on - strand, within Echvi_4020at 4814.908 kb on + strand, within Echvi_4020at 4815.055 kb on + strand, within Echvi_4020at 4815.055 kb on + strand, within Echvi_4020at 4815.094 kb on - strand, within Echvi_4020at 4815.094 kb on - strand, within Echvi_4020at 4815.097 kb on - strand, within Echvi_4020at 4815.139 kb on + strand, within Echvi_4020at 4815.142 kb on + strand, within Echvi_4020at 4815.142 kb on + strand, within Echvi_4020at 4815.142 kb on + strand, within Echvi_4020at 4815.143 kb on - strand, within Echvi_4020at 4815.143 kb on - strand, within Echvi_4020at 4815.143 kb on - strand, within Echvi_4020at 4815.143 kb on - strand, within Echvi_4020at 4815.143 kb on - strand, within Echvi_4020at 4815.197 kb on + strandat 4815.197 kb on + strandat 4815.197 kb on + strandat 4815.197 kb on + strandat 4815.197 kb on + strandat 4815.197 kb on + strandat 4815.197 kb on + strandat 4815.198 kb on - strandat 4815.208 kb on + strandat 4815.227 kb on - strandat 4815.232 kb on + strandat 4815.232 kb on + strandat 4815.233 kb on - strandat 4815.278 kb on + strandat 4815.354 kb on - strandat 4815.391 kb on - strandat 4815.412 kb on + strandat 4815.456 kb on + strandat 4815.456 kb on + strandat 4815.535 kb on + strandat 4815.536 kb on - strandat 4815.536 kb on - strandat 4815.590 kb on + strandat 4815.590 kb on + strandat 4815.590 kb on + strandat 4815.591 kb on - strandat 4815.682 kb on + strand, within Echvi_4021at 4815.760 kb on + strand, within Echvi_4021at 4815.780 kb on - strand, within Echvi_4021at 4816.039 kb on + strand, within Echvi_4021

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml
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4,813,819 + Echvi_4019 0.41 +0.3
4,813,819 + Echvi_4019 0.41 +0.6
4,813,819 + Echvi_4019 0.41 +0.1
4,813,852 + Echvi_4019 0.43 -0.2
4,813,852 + Echvi_4019 0.43 -0.9
4,813,853 - Echvi_4019 0.43 +0.2
4,813,853 - Echvi_4019 0.43 +0.8
4,813,853 - Echvi_4019 0.43 +2.0
4,813,853 - Echvi_4019 0.43 +1.1
4,813,853 - Echvi_4019 0.43 -0.9
4,813,856 + Echvi_4019 0.44 -0.0
4,813,856 + Echvi_4019 0.44 +0.7
4,813,857 - Echvi_4019 0.44 -0.5
4,813,857 - Echvi_4019 0.44 -1.2
4,813,857 - Echvi_4019 0.44 +1.7
4,813,857 - Echvi_4019 0.44 +0.1
4,813,857 - Echvi_4019 0.44 +0.3
4,813,857 - Echvi_4019 0.44 +1.0
4,813,857 - Echvi_4019 0.44 -2.5
4,813,857 - Echvi_4019 0.44 -1.0
4,813,904 + Echvi_4019 0.47 +0.7
4,813,905 - Echvi_4019 0.47 +0.4
4,813,905 - Echvi_4019 0.47 -0.6
4,813,961 - Echvi_4019 0.51 +0.6
4,813,961 - Echvi_4019 0.51 -0.8
4,813,988 + Echvi_4019 0.53 +0.0
4,813,989 - Echvi_4019 0.53 +0.7
4,813,989 - Echvi_4019 0.53 +1.0
4,813,989 - Echvi_4019 0.53 -0.0
4,813,995 - Echvi_4019 0.54 -0.4
4,813,995 - Echvi_4019 0.54 +0.1
4,814,005 - Echvi_4019 0.55 -0.3
4,814,046 + Echvi_4019 0.58 +1.6
4,814,205 - Echvi_4019 0.69 -0.6
4,814,205 - Echvi_4019 0.69 +0.1
4,814,206 + Echvi_4019 0.69 +0.2
4,814,264 + Echvi_4019 0.74 -0.4
4,814,274 - Echvi_4019 0.75 +0.1
4,814,304 - Echvi_4019 0.77 +0.9
4,814,360 - Echvi_4019 0.81 -0.7
4,814,360 - Echvi_4019 0.81 -0.1
4,814,360 - Echvi_4019 0.81 +0.7
4,814,429 - Echvi_4019 0.86 +0.6
4,814,545 + -0.1
4,814,567 - -0.3
4,814,567 - -0.7
4,814,611 + -0.5
4,814,615 + +2.0
4,814,629 + +0.7
4,814,629 + -0.3
4,814,736 + -2.4
4,814,757 + -0.6
4,814,829 + -0.0
4,814,829 + -0.2
4,814,829 + +1.0
4,814,829 + +0.9
4,814,830 - +1.1
4,814,830 - -1.0
4,814,831 + -1.1
4,814,832 - +1.4
4,814,862 + Echvi_4020 0.13 -0.3
4,814,890 + Echvi_4020 0.21 +2.0
4,814,890 + Echvi_4020 0.21 +0.7
4,814,890 + Echvi_4020 0.21 +1.6
4,814,890 + Echvi_4020 0.21 +0.0
4,814,891 - Echvi_4020 0.21 +0.8
4,814,891 - Echvi_4020 0.21 +1.5
4,814,908 + Echvi_4020 0.25 +0.4
4,815,055 + Echvi_4020 0.63 +1.4
4,815,055 + Echvi_4020 0.63 +0.6
4,815,094 - Echvi_4020 0.73 +0.1
4,815,094 - Echvi_4020 0.73 +1.7
4,815,097 - Echvi_4020 0.73 +0.3
4,815,139 + Echvi_4020 0.84 -1.5
4,815,142 + Echvi_4020 0.85 +0.8
4,815,142 + Echvi_4020 0.85 +0.6
4,815,142 + Echvi_4020 0.85 +1.1
4,815,143 - Echvi_4020 0.85 -0.1
4,815,143 - Echvi_4020 0.85 +2.4
4,815,143 - Echvi_4020 0.85 -1.9
4,815,143 - Echvi_4020 0.85 +0.7
4,815,143 - Echvi_4020 0.85 -0.2
4,815,197 + -0.3
4,815,197 + -0.0
4,815,197 + -0.9
4,815,197 + -0.7
4,815,197 + -0.6
4,815,197 + -0.7
4,815,197 + +0.2
4,815,198 - +0.6
4,815,208 + +0.7
4,815,227 - +0.8
4,815,232 + -1.3
4,815,232 + +0.0
4,815,233 - +0.7
4,815,278 + -0.0
4,815,354 - +1.0
4,815,391 - +0.1
4,815,412 + +0.1
4,815,456 + -0.7
4,815,456 + -0.0
4,815,535 + -0.7
4,815,536 - +0.9
4,815,536 - +1.2
4,815,590 + +0.0
4,815,590 + -0.1
4,815,590 + -0.4
4,815,591 - +0.7
4,815,682 + Echvi_4021 0.11 +1.3
4,815,760 + Echvi_4021 0.18 -2.0
4,815,780 - Echvi_4021 0.20 +1.6
4,816,039 + Echvi_4021 0.43 +0.1

Or see this region's nucleotide sequence