Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_3732

Experiment: m.b. Cisplatin 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_3731 and Echvi_3732 are separated by 140 nucleotidesEchvi_3732 and Echvi_3733 are separated by 12 nucleotides Echvi_3731: Echvi_3731 - D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4), at 4,438,171 to 4,439,466 _3731 Echvi_3732: Echvi_3732 - hypothetical protein, at 4,439,607 to 4,441,019 _3732 Echvi_3733: Echvi_3733 - TonB-linked outer membrane protein, SusC/RagA family, at 4,441,032 to 4,444,127 _3733 Position (kb) 4439 4440 4441 4442Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4438.619 kb on - strand, within Echvi_3731at 4438.670 kb on + strand, within Echvi_3731at 4438.671 kb on - strand, within Echvi_3731at 4438.743 kb on + strand, within Echvi_3731at 4438.744 kb on - strand, within Echvi_3731at 4438.761 kb on + strand, within Echvi_3731at 4438.863 kb on + strand, within Echvi_3731at 4438.864 kb on - strand, within Echvi_3731at 4438.864 kb on - strand, within Echvi_3731at 4438.864 kb on - strand, within Echvi_3731at 4438.901 kb on - strand, within Echvi_3731at 4438.905 kb on + strand, within Echvi_3731at 4438.906 kb on - strand, within Echvi_3731at 4438.906 kb on - strand, within Echvi_3731at 4438.907 kb on - strand, within Echvi_3731at 4438.998 kb on - strand, within Echvi_3731at 4439.030 kb on + strand, within Echvi_3731at 4439.030 kb on + strand, within Echvi_3731at 4439.033 kb on + strand, within Echvi_3731at 4439.066 kb on + strand, within Echvi_3731at 4439.066 kb on + strand, within Echvi_3731at 4439.099 kb on + strand, within Echvi_3731at 4439.100 kb on - strand, within Echvi_3731at 4439.216 kb on + strand, within Echvi_3731at 4439.251 kb on - strand, within Echvi_3731at 4439.252 kb on + strand, within Echvi_3731at 4439.252 kb on + strand, within Echvi_3731at 4439.252 kb on + strand, within Echvi_3731at 4439.253 kb on - strand, within Echvi_3731at 4439.253 kb on - strand, within Echvi_3731at 4439.262 kb on - strand, within Echvi_3731at 4439.300 kb on + strand, within Echvi_3731at 4439.300 kb on + strand, within Echvi_3731at 4439.300 kb on + strand, within Echvi_3731at 4439.304 kb on + strand, within Echvi_3731at 4439.305 kb on - strand, within Echvi_3731at 4439.321 kb on + strand, within Echvi_3731at 4439.322 kb on - strand, within Echvi_3731at 4439.322 kb on - strand, within Echvi_3731at 4439.355 kb on + strandat 4439.356 kb on - strandat 4439.356 kb on - strandat 4439.356 kb on - strandat 4439.356 kb on - strandat 4439.453 kb on - strandat 4439.491 kb on + strandat 4439.519 kb on + strandat 4439.519 kb on + strandat 4439.537 kb on + strandat 4439.537 kb on + strandat 4439.537 kb on + strandat 4439.571 kb on + strandat 4439.571 kb on + strandat 4439.578 kb on - strandat 4439.591 kb on + strandat 4439.591 kb on + strandat 4439.592 kb on - strandat 4439.608 kb on + strandat 4439.626 kb on - strandat 4439.729 kb on + strandat 4439.730 kb on - strandat 4439.756 kb on + strand, within Echvi_3732at 4439.756 kb on + strand, within Echvi_3732at 4439.756 kb on + strand, within Echvi_3732at 4439.756 kb on + strand, within Echvi_3732at 4439.757 kb on - strand, within Echvi_3732at 4439.758 kb on + strand, within Echvi_3732at 4439.832 kb on + strand, within Echvi_3732at 4439.832 kb on + strand, within Echvi_3732at 4439.832 kb on + strand, within Echvi_3732at 4439.833 kb on - strand, within Echvi_3732at 4439.833 kb on - strand, within Echvi_3732at 4439.833 kb on - strand, within Echvi_3732at 4439.833 kb on - strand, within Echvi_3732at 4439.916 kb on + strand, within Echvi_3732at 4439.916 kb on + strand, within Echvi_3732at 4439.916 kb on + strand, within Echvi_3732at 4439.917 kb on - strand, within Echvi_3732at 4439.921 kb on + strand, within Echvi_3732at 4439.922 kb on - strand, within Echvi_3732at 4439.922 kb on - strand, within Echvi_3732at 4439.928 kb on - strand, within Echvi_3732at 4439.950 kb on + strand, within Echvi_3732at 4439.973 kb on - strand, within Echvi_3732at 4440.020 kb on - strand, within Echvi_3732at 4440.053 kb on + strand, within Echvi_3732at 4440.053 kb on + strand, within Echvi_3732at 4440.055 kb on + strand, within Echvi_3732at 4440.055 kb on + strand, within Echvi_3732at 4440.056 kb on - strand, within Echvi_3732at 4440.058 kb on + strand, within Echvi_3732at 4440.058 kb on + strand, within Echvi_3732at 4440.058 kb on + strand, within Echvi_3732at 4440.059 kb on - strand, within Echvi_3732at 4440.153 kb on - strand, within Echvi_3732at 4440.320 kb on + strand, within Echvi_3732at 4440.320 kb on + strand, within Echvi_3732at 4440.374 kb on + strand, within Echvi_3732at 4440.375 kb on - strand, within Echvi_3732at 4440.376 kb on + strand, within Echvi_3732at 4440.386 kb on + strand, within Echvi_3732at 4440.386 kb on + strand, within Echvi_3732at 4440.387 kb on - strand, within Echvi_3732at 4440.405 kb on - strand, within Echvi_3732at 4440.465 kb on - strand, within Echvi_3732at 4440.529 kb on + strand, within Echvi_3732at 4440.569 kb on - strand, within Echvi_3732at 4440.642 kb on + strand, within Echvi_3732at 4440.647 kb on + strand, within Echvi_3732at 4440.740 kb on + strand, within Echvi_3732at 4440.740 kb on + strand, within Echvi_3732at 4440.742 kb on + strand, within Echvi_3732at 4440.742 kb on + strand, within Echvi_3732at 4440.742 kb on + strand, within Echvi_3732at 4440.742 kb on + strand, within Echvi_3732at 4440.742 kb on + strand, within Echvi_3732at 4440.743 kb on - strand, within Echvi_3732at 4440.772 kb on - strand, within Echvi_3732at 4440.791 kb on + strand, within Echvi_3732at 4440.798 kb on - strand, within Echvi_3732at 4440.798 kb on - strand, within Echvi_3732at 4440.820 kb on + strand, within Echvi_3732at 4440.821 kb on - strand, within Echvi_3732at 4440.830 kb on - strand, within Echvi_3732at 4440.839 kb on + strand, within Echvi_3732at 4440.857 kb on - strand, within Echvi_3732at 4440.860 kb on + strand, within Echvi_3732at 4440.860 kb on + strand, within Echvi_3732at 4440.861 kb on - strand, within Echvi_3732at 4440.861 kb on - strand, within Echvi_3732at 4440.861 kb on - strand, within Echvi_3732at 4440.861 kb on - strand, within Echvi_3732at 4440.861 kb on - strand, within Echvi_3732at 4440.861 kb on - strand, within Echvi_3732at 4440.864 kb on + strand, within Echvi_3732at 4440.865 kb on - strand, within Echvi_3732at 4440.865 kb on - strand, within Echvi_3732at 4440.865 kb on - strand, within Echvi_3732at 4440.865 kb on - strand, within Echvi_3732at 4440.877 kb on + strand, within Echvi_3732at 4440.997 kb on + strandat 4440.998 kb on - strandat 4441.001 kb on + strandat 4441.001 kb on + strandat 4441.001 kb on + strandat 4441.001 kb on + strandat 4441.001 kb on + strandat 4441.001 kb on + strandat 4441.001 kb on + strandat 4441.002 kb on - strandat 4441.002 kb on - strandat 4441.004 kb on - strandat 4441.004 kb on - strandat 4441.008 kb on - strandat 4441.008 kb on - strandat 4441.029 kb on + strandat 4441.029 kb on + strandat 4441.041 kb on + strandat 4441.042 kb on - strandat 4441.052 kb on + strandat 4441.164 kb on + strandat 4441.165 kb on - strandat 4441.165 kb on - strandat 4441.170 kb on - strandat 4441.182 kb on + strandat 4441.182 kb on + strandat 4441.183 kb on - strandat 4441.203 kb on - strandat 4441.309 kb on + strandat 4441.313 kb on + strandat 4441.313 kb on + strandat 4441.314 kb on - strandat 4441.368 kb on + strand, within Echvi_3733at 4441.369 kb on - strand, within Echvi_3733at 4441.369 kb on - strand, within Echvi_3733at 4441.369 kb on - strand, within Echvi_3733at 4441.407 kb on + strand, within Echvi_3733at 4441.408 kb on - strand, within Echvi_3733at 4441.445 kb on + strand, within Echvi_3733at 4441.447 kb on + strand, within Echvi_3733at 4441.448 kb on - strand, within Echvi_3733at 4441.470 kb on + strand, within Echvi_3733at 4441.470 kb on + strand, within Echvi_3733at 4441.493 kb on - strand, within Echvi_3733at 4441.493 kb on - strand, within Echvi_3733at 4441.562 kb on + strand, within Echvi_3733at 4441.649 kb on + strand, within Echvi_3733at 4441.693 kb on + strand, within Echvi_3733at 4441.694 kb on - strand, within Echvi_3733at 4441.694 kb on - strand, within Echvi_3733at 4441.710 kb on - strand, within Echvi_3733at 4441.714 kb on + strand, within Echvi_3733at 4441.714 kb on + strand, within Echvi_3733at 4441.715 kb on - strand, within Echvi_3733at 4441.715 kb on - strand, within Echvi_3733at 4441.722 kb on - strand, within Echvi_3733at 4441.722 kb on - strand, within Echvi_3733at 4441.760 kb on + strand, within Echvi_3733at 4441.788 kb on + strand, within Echvi_3733at 4441.788 kb on + strand, within Echvi_3733at 4441.821 kb on + strand, within Echvi_3733at 4441.848 kb on - strand, within Echvi_3733at 4441.868 kb on + strand, within Echvi_3733at 4441.868 kb on + strand, within Echvi_3733at 4441.869 kb on - strand, within Echvi_3733at 4441.889 kb on + strand, within Echvi_3733at 4441.890 kb on - strand, within Echvi_3733at 4441.912 kb on - strand, within Echvi_3733at 4441.946 kb on + strand, within Echvi_3733at 4441.946 kb on + strand, within Echvi_3733at 4441.946 kb on + strand, within Echvi_3733at 4441.946 kb on + strand, within Echvi_3733at 4441.948 kb on + strand, within Echvi_3733at 4441.948 kb on + strand, within Echvi_3733at 4441.948 kb on + strand, within Echvi_3733at 4441.948 kb on + strand, within Echvi_3733at 4441.994 kb on + strand, within Echvi_3733at 4441.994 kb on + strand, within Echvi_3733at 4441.995 kb on - strand, within Echvi_3733at 4442.012 kb on + strand, within Echvi_3733at 4442.012 kb on + strand, within Echvi_3733at 4442.017 kb on + strand, within Echvi_3733

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml
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4,438,619 - Echvi_3731 0.35 -0.9
4,438,670 + Echvi_3731 0.39 -0.8
4,438,671 - Echvi_3731 0.39 +0.1
4,438,743 + Echvi_3731 0.44 -0.8
4,438,744 - Echvi_3731 0.44 +0.5
4,438,761 + Echvi_3731 0.46 -0.6
4,438,863 + Echvi_3731 0.53 +0.3
4,438,864 - Echvi_3731 0.53 -1.3
4,438,864 - Echvi_3731 0.53 +1.2
4,438,864 - Echvi_3731 0.53 -0.9
4,438,901 - Echvi_3731 0.56 -0.5
4,438,905 + Echvi_3731 0.57 +0.7
4,438,906 - Echvi_3731 0.57 -0.5
4,438,906 - Echvi_3731 0.57 +0.4
4,438,907 - Echvi_3731 0.57 -1.2
4,438,998 - Echvi_3731 0.64 -0.2
4,439,030 + Echvi_3731 0.66 +0.2
4,439,030 + Echvi_3731 0.66 -0.3
4,439,033 + Echvi_3731 0.67 -0.1
4,439,066 + Echvi_3731 0.69 +0.1
4,439,066 + Echvi_3731 0.69 +1.1
4,439,099 + Echvi_3731 0.72 -0.2
4,439,100 - Echvi_3731 0.72 +0.9
4,439,216 + Echvi_3731 0.81 -1.2
4,439,251 - Echvi_3731 0.83 -0.1
4,439,252 + Echvi_3731 0.83 +0.5
4,439,252 + Echvi_3731 0.83 -2.4
4,439,252 + Echvi_3731 0.83 -0.5
4,439,253 - Echvi_3731 0.83 -0.1
4,439,253 - Echvi_3731 0.83 -0.1
4,439,262 - Echvi_3731 0.84 +0.4
4,439,300 + Echvi_3731 0.87 +0.1
4,439,300 + Echvi_3731 0.87 -0.7
4,439,300 + Echvi_3731 0.87 -0.2
4,439,304 + Echvi_3731 0.87 +1.6
4,439,305 - Echvi_3731 0.88 +1.1
4,439,321 + Echvi_3731 0.89 -0.5
4,439,322 - Echvi_3731 0.89 +0.5
4,439,322 - Echvi_3731 0.89 -0.6
4,439,355 + -1.5
4,439,356 - +1.3
4,439,356 - +0.0
4,439,356 - -0.5
4,439,356 - +0.7
4,439,453 - -1.1
4,439,491 + -1.0
4,439,519 + -0.4
4,439,519 + -0.3
4,439,537 + -0.8
4,439,537 + -0.1
4,439,537 + -0.6
4,439,571 + -0.3
4,439,571 + +0.0
4,439,578 - -0.8
4,439,591 + -0.2
4,439,591 + +0.0
4,439,592 - +0.7
4,439,608 + +0.8
4,439,626 - +0.0
4,439,729 + -0.2
4,439,730 - +0.3
4,439,756 + Echvi_3732 0.11 -0.3
4,439,756 + Echvi_3732 0.11 -1.0
4,439,756 + Echvi_3732 0.11 +1.4
4,439,756 + Echvi_3732 0.11 -0.4
4,439,757 - Echvi_3732 0.11 -0.5
4,439,758 + Echvi_3732 0.11 +0.3
4,439,832 + Echvi_3732 0.16 -0.8
4,439,832 + Echvi_3732 0.16 +1.3
4,439,832 + Echvi_3732 0.16 -1.7
4,439,833 - Echvi_3732 0.16 +0.5
4,439,833 - Echvi_3732 0.16 +1.0
4,439,833 - Echvi_3732 0.16 +0.6
4,439,833 - Echvi_3732 0.16 -0.3
4,439,916 + Echvi_3732 0.22 +0.7
4,439,916 + Echvi_3732 0.22 -0.7
4,439,916 + Echvi_3732 0.22 +0.2
4,439,917 - Echvi_3732 0.22 -0.6
4,439,921 + Echvi_3732 0.22 -2.5
4,439,922 - Echvi_3732 0.22 -1.0
4,439,922 - Echvi_3732 0.22 +0.3
4,439,928 - Echvi_3732 0.23 -1.2
4,439,950 + Echvi_3732 0.24 -0.2
4,439,973 - Echvi_3732 0.26 -0.9
4,440,020 - Echvi_3732 0.29 -0.9
4,440,053 + Echvi_3732 0.32 -0.5
4,440,053 + Echvi_3732 0.32 -1.3
4,440,055 + Echvi_3732 0.32 -0.0
4,440,055 + Echvi_3732 0.32 -0.3
4,440,056 - Echvi_3732 0.32 -0.2
4,440,058 + Echvi_3732 0.32 -0.9
4,440,058 + Echvi_3732 0.32 +0.5
4,440,058 + Echvi_3732 0.32 -0.6
4,440,059 - Echvi_3732 0.32 +0.2
4,440,153 - Echvi_3732 0.39 -0.4
4,440,320 + Echvi_3732 0.50 -0.3
4,440,320 + Echvi_3732 0.50 -1.4
4,440,374 + Echvi_3732 0.54 -0.6
4,440,375 - Echvi_3732 0.54 -1.2
4,440,376 + Echvi_3732 0.54 +0.1
4,440,386 + Echvi_3732 0.55 +0.0
4,440,386 + Echvi_3732 0.55 -0.8
4,440,387 - Echvi_3732 0.55 -1.4
4,440,405 - Echvi_3732 0.56 +0.3
4,440,465 - Echvi_3732 0.61 -0.5
4,440,529 + Echvi_3732 0.65 +0.4
4,440,569 - Echvi_3732 0.68 +0.1
4,440,642 + Echvi_3732 0.73 -2.9
4,440,647 + Echvi_3732 0.74 +1.7
4,440,740 + Echvi_3732 0.80 +0.1
4,440,740 + Echvi_3732 0.80 -1.9
4,440,742 + Echvi_3732 0.80 +0.0
4,440,742 + Echvi_3732 0.80 -0.6
4,440,742 + Echvi_3732 0.80 -2.0
4,440,742 + Echvi_3732 0.80 +0.3
4,440,742 + Echvi_3732 0.80 -0.2
4,440,743 - Echvi_3732 0.80 -0.3
4,440,772 - Echvi_3732 0.82 -0.1
4,440,791 + Echvi_3732 0.84 +1.9
4,440,798 - Echvi_3732 0.84 +0.4
4,440,798 - Echvi_3732 0.84 -0.6
4,440,820 + Echvi_3732 0.86 -0.2
4,440,821 - Echvi_3732 0.86 -0.4
4,440,830 - Echvi_3732 0.87 +0.6
4,440,839 + Echvi_3732 0.87 -0.5
4,440,857 - Echvi_3732 0.88 +0.2
4,440,860 + Echvi_3732 0.89 -0.4
4,440,860 + Echvi_3732 0.89 -0.8
4,440,861 - Echvi_3732 0.89 -0.4
4,440,861 - Echvi_3732 0.89 -0.1
4,440,861 - Echvi_3732 0.89 -1.4
4,440,861 - Echvi_3732 0.89 +0.3
4,440,861 - Echvi_3732 0.89 -0.4
4,440,861 - Echvi_3732 0.89 -0.0
4,440,864 + Echvi_3732 0.89 +0.4
4,440,865 - Echvi_3732 0.89 +0.2
4,440,865 - Echvi_3732 0.89 +0.2
4,440,865 - Echvi_3732 0.89 +0.0
4,440,865 - Echvi_3732 0.89 -0.5
4,440,877 + Echvi_3732 0.90 -0.0
4,440,997 + -0.4
4,440,998 - -2.1
4,441,001 + -1.2
4,441,001 + +1.5
4,441,001 + -1.0
4,441,001 + -0.2
4,441,001 + -1.6
4,441,001 + -0.4
4,441,001 + +0.2
4,441,002 - -0.0
4,441,002 - -1.2
4,441,004 - +1.0
4,441,004 - +0.1
4,441,008 - +0.1
4,441,008 - -1.8
4,441,029 + -0.1
4,441,029 + -0.4
4,441,041 + -0.1
4,441,042 - +1.3
4,441,052 + +0.4
4,441,164 + +0.9
4,441,165 - -0.7
4,441,165 - +0.6
4,441,170 - -0.1
4,441,182 + -0.7
4,441,182 + +0.9
4,441,183 - +0.3
4,441,203 - +0.5
4,441,309 + -0.7
4,441,313 + +0.0
4,441,313 + +0.3
4,441,314 - -0.5
4,441,368 + Echvi_3733 0.11 -0.2
4,441,369 - Echvi_3733 0.11 -0.6
4,441,369 - Echvi_3733 0.11 -0.6
4,441,369 - Echvi_3733 0.11 -0.5
4,441,407 + Echvi_3733 0.12 -0.3
4,441,408 - Echvi_3733 0.12 -0.6
4,441,445 + Echvi_3733 0.13 +0.7
4,441,447 + Echvi_3733 0.13 -0.8
4,441,448 - Echvi_3733 0.13 +0.3
4,441,470 + Echvi_3733 0.14 +0.7
4,441,470 + Echvi_3733 0.14 -1.3
4,441,493 - Echvi_3733 0.15 -0.0
4,441,493 - Echvi_3733 0.15 +1.3
4,441,562 + Echvi_3733 0.17 -0.3
4,441,649 + Echvi_3733 0.20 +0.3
4,441,693 + Echvi_3733 0.21 -0.7
4,441,694 - Echvi_3733 0.21 +0.3
4,441,694 - Echvi_3733 0.21 -0.6
4,441,710 - Echvi_3733 0.22 +1.0
4,441,714 + Echvi_3733 0.22 +0.4
4,441,714 + Echvi_3733 0.22 +1.5
4,441,715 - Echvi_3733 0.22 -1.5
4,441,715 - Echvi_3733 0.22 +0.0
4,441,722 - Echvi_3733 0.22 +0.5
4,441,722 - Echvi_3733 0.22 +0.3
4,441,760 + Echvi_3733 0.24 +0.7
4,441,788 + Echvi_3733 0.24 +2.3
4,441,788 + Echvi_3733 0.24 -0.7
4,441,821 + Echvi_3733 0.25 -0.4
4,441,848 - Echvi_3733 0.26 -0.2
4,441,868 + Echvi_3733 0.27 -1.0
4,441,868 + Echvi_3733 0.27 -0.9
4,441,869 - Echvi_3733 0.27 -0.2
4,441,889 + Echvi_3733 0.28 +0.7
4,441,890 - Echvi_3733 0.28 -1.1
4,441,912 - Echvi_3733 0.28 +0.4
4,441,946 + Echvi_3733 0.30 -0.4
4,441,946 + Echvi_3733 0.30 +0.3
4,441,946 + Echvi_3733 0.30 +0.0
4,441,946 + Echvi_3733 0.30 +0.8
4,441,948 + Echvi_3733 0.30 -0.5
4,441,948 + Echvi_3733 0.30 -0.4
4,441,948 + Echvi_3733 0.30 -0.2
4,441,948 + Echvi_3733 0.30 +0.2
4,441,994 + Echvi_3733 0.31 -0.3
4,441,994 + Echvi_3733 0.31 +0.2
4,441,995 - Echvi_3733 0.31 +0.1
4,442,012 + Echvi_3733 0.32 -0.4
4,442,012 + Echvi_3733 0.32 +0.1
4,442,017 + Echvi_3733 0.32 +0.7

Or see this region's nucleotide sequence