Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_2664

Experiment: m.b. Cisplatin 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_2663 and Echvi_2664 are separated by 384 nucleotidesEchvi_2664 and Echvi_2665 are separated by 15 nucleotides Echvi_2663: Echvi_2663 - Beta-1,4-xylanase, at 3,159,058 to 3,160,218 _2663 Echvi_2664: Echvi_2664 - Beta-xylosidase, at 3,160,603 to 3,162,174 _2664 Echvi_2665: Echvi_2665 - Beta-xylosidase, at 3,162,190 to 3,163,545 _2665 Position (kb) 3160 3161 3162 3163Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3159.689 kb on - strand, within Echvi_2663at 3159.691 kb on + strand, within Echvi_2663at 3159.691 kb on + strand, within Echvi_2663at 3159.691 kb on + strand, within Echvi_2663at 3159.692 kb on - strand, within Echvi_2663at 3159.955 kb on + strand, within Echvi_2663at 3159.956 kb on - strand, within Echvi_2663at 3160.025 kb on - strand, within Echvi_2663at 3160.044 kb on - strand, within Echvi_2663at 3160.221 kb on - strandat 3160.233 kb on + strandat 3160.233 kb on + strandat 3160.233 kb on + strandat 3160.234 kb on - strandat 3160.268 kb on + strandat 3160.274 kb on + strandat 3160.276 kb on + strandat 3160.279 kb on - strandat 3160.288 kb on - strandat 3160.302 kb on + strandat 3160.401 kb on - strandat 3160.446 kb on + strandat 3160.454 kb on + strandat 3160.454 kb on + strandat 3160.543 kb on + strandat 3160.544 kb on - strandat 3160.544 kb on - strandat 3160.562 kb on + strandat 3160.563 kb on - strandat 3160.564 kb on + strandat 3160.564 kb on + strandat 3160.566 kb on + strandat 3160.566 kb on + strandat 3160.566 kb on + strandat 3160.567 kb on - strandat 3160.570 kb on + strandat 3160.571 kb on - strandat 3160.571 kb on - strandat 3160.595 kb on - strandat 3160.595 kb on - strandat 3160.623 kb on - strandat 3160.623 kb on - strandat 3160.631 kb on + strandat 3160.742 kb on + strandat 3160.753 kb on + strandat 3160.753 kb on + strandat 3160.754 kb on - strandat 3160.754 kb on - strandat 3160.754 kb on - strandat 3160.756 kb on + strandat 3160.756 kb on + strandat 3160.756 kb on + strandat 3160.757 kb on - strandat 3160.757 kb on - strandat 3160.757 kb on - strandat 3160.798 kb on - strand, within Echvi_2664at 3160.798 kb on - strand, within Echvi_2664at 3160.798 kb on - strand, within Echvi_2664at 3160.800 kb on - strand, within Echvi_2664at 3160.840 kb on + strand, within Echvi_2664at 3160.846 kb on + strand, within Echvi_2664at 3160.847 kb on - strand, within Echvi_2664at 3160.847 kb on - strand, within Echvi_2664at 3160.890 kb on + strand, within Echvi_2664at 3160.934 kb on - strand, within Echvi_2664at 3160.934 kb on - strand, within Echvi_2664at 3160.934 kb on - strand, within Echvi_2664at 3160.948 kb on + strand, within Echvi_2664at 3160.949 kb on - strand, within Echvi_2664at 3160.951 kb on + strand, within Echvi_2664at 3160.952 kb on - strand, within Echvi_2664at 3160.952 kb on - strand, within Echvi_2664at 3161.050 kb on + strand, within Echvi_2664at 3161.050 kb on + strand, within Echvi_2664at 3161.257 kb on + strand, within Echvi_2664at 3161.257 kb on + strand, within Echvi_2664at 3161.258 kb on - strand, within Echvi_2664at 3161.261 kb on - strand, within Echvi_2664at 3161.271 kb on + strand, within Echvi_2664at 3161.339 kb on - strand, within Echvi_2664at 3161.406 kb on + strand, within Echvi_2664at 3161.407 kb on - strand, within Echvi_2664at 3161.407 kb on - strand, within Echvi_2664at 3161.413 kb on + strand, within Echvi_2664at 3161.414 kb on - strand, within Echvi_2664at 3161.414 kb on - strand, within Echvi_2664at 3161.420 kb on - strand, within Echvi_2664at 3161.423 kb on + strand, within Echvi_2664at 3161.444 kb on + strand, within Echvi_2664at 3161.458 kb on + strand, within Echvi_2664at 3161.462 kb on + strand, within Echvi_2664at 3161.545 kb on - strand, within Echvi_2664at 3161.545 kb on - strand, within Echvi_2664at 3161.568 kb on - strand, within Echvi_2664at 3161.634 kb on + strand, within Echvi_2664at 3161.665 kb on - strand, within Echvi_2664at 3161.748 kb on + strand, within Echvi_2664at 3161.759 kb on - strand, within Echvi_2664at 3161.769 kb on - strand, within Echvi_2664at 3161.850 kb on - strand, within Echvi_2664at 3162.007 kb on + strand, within Echvi_2664at 3162.008 kb on - strand, within Echvi_2664at 3162.061 kb on + strandat 3162.062 kb on - strandat 3162.063 kb on + strandat 3162.064 kb on - strandat 3162.102 kb on + strandat 3162.188 kb on - strandat 3162.189 kb on + strandat 3162.189 kb on + strandat 3162.190 kb on - strandat 3162.190 kb on - strandat 3162.240 kb on - strandat 3162.250 kb on + strandat 3162.258 kb on + strandat 3162.258 kb on + strandat 3162.259 kb on - strandat 3162.259 kb on - strandat 3162.337 kb on + strand, within Echvi_2665at 3162.337 kb on + strand, within Echvi_2665at 3162.337 kb on + strand, within Echvi_2665at 3162.338 kb on - strand, within Echvi_2665at 3162.338 kb on - strand, within Echvi_2665at 3162.338 kb on - strand, within Echvi_2665at 3162.338 kb on - strand, within Echvi_2665at 3162.338 kb on - strandat 3162.341 kb on + strand, within Echvi_2665at 3162.342 kb on - strand, within Echvi_2665at 3162.342 kb on - strand, within Echvi_2665at 3162.342 kb on - strand, within Echvi_2665at 3162.342 kb on - strand, within Echvi_2665at 3162.342 kb on - strand, within Echvi_2665at 3162.342 kb on - strand, within Echvi_2665at 3162.361 kb on + strand, within Echvi_2665at 3162.409 kb on + strand, within Echvi_2665at 3162.409 kb on + strand, within Echvi_2665at 3162.480 kb on - strand, within Echvi_2665at 3162.548 kb on - strand, within Echvi_2665at 3162.600 kb on + strand, within Echvi_2665at 3162.605 kb on + strand, within Echvi_2665at 3162.605 kb on + strand, within Echvi_2665at 3162.606 kb on - strand, within Echvi_2665at 3162.680 kb on + strand, within Echvi_2665at 3162.681 kb on - strand, within Echvi_2665at 3162.718 kb on + strand, within Echvi_2665at 3162.718 kb on + strand, within Echvi_2665at 3162.725 kb on - strand, within Echvi_2665at 3162.742 kb on - strand, within Echvi_2665at 3162.746 kb on - strand, within Echvi_2665at 3162.746 kb on - strand, within Echvi_2665at 3162.746 kb on - strand, within Echvi_2665at 3162.759 kb on + strand, within Echvi_2665at 3162.768 kb on + strand, within Echvi_2665at 3162.768 kb on + strand, within Echvi_2665at 3162.768 kb on + strand, within Echvi_2665at 3162.768 kb on + strand, within Echvi_2665at 3162.769 kb on - strand, within Echvi_2665at 3162.769 kb on - strand, within Echvi_2665at 3162.838 kb on + strand, within Echvi_2665at 3162.838 kb on + strand, within Echvi_2665at 3162.838 kb on + strand, within Echvi_2665at 3162.839 kb on - strand, within Echvi_2665at 3162.839 kb on - strand, within Echvi_2665at 3162.839 kb on - strand, within Echvi_2665at 3162.839 kb on - strand, within Echvi_2665at 3162.839 kb on - strand, within Echvi_2665at 3162.839 kb on - strand, within Echvi_2665at 3162.840 kb on + strand, within Echvi_2665at 3162.863 kb on - strand, within Echvi_2665at 3162.863 kb on - strand, within Echvi_2665at 3162.910 kb on + strand, within Echvi_2665

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml
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3,159,689 - Echvi_2663 0.54 +1.2
3,159,691 + Echvi_2663 0.55 -0.3
3,159,691 + Echvi_2663 0.55 -0.6
3,159,691 + Echvi_2663 0.55 -0.3
3,159,692 - Echvi_2663 0.55 -0.6
3,159,955 + Echvi_2663 0.77 -0.7
3,159,956 - Echvi_2663 0.77 -0.3
3,160,025 - Echvi_2663 0.83 -0.5
3,160,044 - Echvi_2663 0.85 -0.4
3,160,221 - +0.1
3,160,233 + -2.0
3,160,233 + -0.7
3,160,233 + +0.9
3,160,234 - +0.2
3,160,268 + -0.1
3,160,274 + -0.9
3,160,276 + -0.3
3,160,279 - -1.1
3,160,288 - -0.3
3,160,302 + +0.5
3,160,401 - +0.3
3,160,446 + -0.7
3,160,454 + -0.2
3,160,454 + -0.8
3,160,543 + -0.2
3,160,544 - +0.1
3,160,544 - -0.2
3,160,562 + +0.2
3,160,563 - +0.9
3,160,564 + -0.3
3,160,564 + +1.7
3,160,566 + -0.4
3,160,566 + +1.2
3,160,566 + +0.5
3,160,567 - -0.2
3,160,570 + +0.0
3,160,571 - -1.1
3,160,571 - -0.6
3,160,595 - -0.3
3,160,595 - -1.4
3,160,623 - +0.2
3,160,623 - -0.9
3,160,631 + +0.2
3,160,742 + -0.1
3,160,753 + -1.2
3,160,753 + -0.4
3,160,754 - +1.0
3,160,754 - -0.6
3,160,754 - +0.3
3,160,756 + -0.7
3,160,756 + -0.0
3,160,756 + -0.5
3,160,757 - -0.2
3,160,757 - +0.9
3,160,757 - -1.5
3,160,798 - Echvi_2664 0.12 +0.4
3,160,798 - Echvi_2664 0.12 -0.5
3,160,798 - Echvi_2664 0.12 -0.2
3,160,800 - Echvi_2664 0.13 -1.6
3,160,840 + Echvi_2664 0.15 +0.3
3,160,846 + Echvi_2664 0.15 -0.3
3,160,847 - Echvi_2664 0.16 +1.2
3,160,847 - Echvi_2664 0.16 +1.4
3,160,890 + Echvi_2664 0.18 +0.9
3,160,934 - Echvi_2664 0.21 -0.2
3,160,934 - Echvi_2664 0.21 +0.6
3,160,934 - Echvi_2664 0.21 -1.1
3,160,948 + Echvi_2664 0.22 +1.3
3,160,949 - Echvi_2664 0.22 +0.3
3,160,951 + Echvi_2664 0.22 -0.5
3,160,952 - Echvi_2664 0.22 +0.0
3,160,952 - Echvi_2664 0.22 -0.3
3,161,050 + Echvi_2664 0.28 -0.2
3,161,050 + Echvi_2664 0.28 +2.4
3,161,257 + Echvi_2664 0.42 -0.9
3,161,257 + Echvi_2664 0.42 +0.1
3,161,258 - Echvi_2664 0.42 +0.1
3,161,261 - Echvi_2664 0.42 +0.3
3,161,271 + Echvi_2664 0.42 -0.5
3,161,339 - Echvi_2664 0.47 -1.1
3,161,406 + Echvi_2664 0.51 +0.8
3,161,407 - Echvi_2664 0.51 +3.1
3,161,407 - Echvi_2664 0.51 -0.6
3,161,413 + Echvi_2664 0.52 -2.8
3,161,414 - Echvi_2664 0.52 +0.7
3,161,414 - Echvi_2664 0.52 -0.0
3,161,420 - Echvi_2664 0.52 -0.3
3,161,423 + Echvi_2664 0.52 -0.2
3,161,444 + Echvi_2664 0.53 -0.8
3,161,458 + Echvi_2664 0.54 -1.1
3,161,462 + Echvi_2664 0.55 -0.7
3,161,545 - Echvi_2664 0.60 -0.4
3,161,545 - Echvi_2664 0.60 -0.6
3,161,568 - Echvi_2664 0.61 -1.6
3,161,634 + Echvi_2664 0.66 -1.3
3,161,665 - Echvi_2664 0.68 +0.3
3,161,748 + Echvi_2664 0.73 -1.5
3,161,759 - Echvi_2664 0.74 +0.9
3,161,769 - Echvi_2664 0.74 -2.1
3,161,850 - Echvi_2664 0.79 +0.2
3,162,007 + Echvi_2664 0.89 +0.1
3,162,008 - Echvi_2664 0.89 +0.7
3,162,061 + +0.5
3,162,062 - +0.3
3,162,063 + -0.2
3,162,064 - +0.2
3,162,102 + -2.4
3,162,188 - +0.6
3,162,189 + +0.1
3,162,189 + +0.3
3,162,190 - -1.2
3,162,190 - -0.3
3,162,240 - +0.4
3,162,250 + +0.5
3,162,258 + -0.1
3,162,258 + -1.2
3,162,259 - -0.9
3,162,259 - +0.1
3,162,337 + Echvi_2665 0.11 -0.3
3,162,337 + Echvi_2665 0.11 +1.4
3,162,337 + Echvi_2665 0.11 -1.6
3,162,338 - Echvi_2665 0.11 -0.3
3,162,338 - Echvi_2665 0.11 -0.7
3,162,338 - Echvi_2665 0.11 -0.0
3,162,338 - Echvi_2665 0.11 -0.5
3,162,338 - +2.1
3,162,341 + Echvi_2665 0.11 -1.7
3,162,342 - Echvi_2665 0.11 -0.7
3,162,342 - Echvi_2665 0.11 +0.0
3,162,342 - Echvi_2665 0.11 +1.0
3,162,342 - Echvi_2665 0.11 +0.3
3,162,342 - Echvi_2665 0.11 +0.6
3,162,342 - Echvi_2665 0.11 -1.0
3,162,361 + Echvi_2665 0.13 +0.3
3,162,409 + Echvi_2665 0.16 +0.2
3,162,409 + Echvi_2665 0.16 -1.1
3,162,480 - Echvi_2665 0.21 +1.6
3,162,548 - Echvi_2665 0.26 -0.0
3,162,600 + Echvi_2665 0.30 -1.2
3,162,605 + Echvi_2665 0.31 +0.4
3,162,605 + Echvi_2665 0.31 +0.0
3,162,606 - Echvi_2665 0.31 +0.8
3,162,680 + Echvi_2665 0.36 -0.7
3,162,681 - Echvi_2665 0.36 +1.0
3,162,718 + Echvi_2665 0.39 -1.0
3,162,718 + Echvi_2665 0.39 -0.8
3,162,725 - Echvi_2665 0.39 -0.6
3,162,742 - Echvi_2665 0.41 +0.6
3,162,746 - Echvi_2665 0.41 +1.1
3,162,746 - Echvi_2665 0.41 +1.5
3,162,746 - Echvi_2665 0.41 -0.2
3,162,759 + Echvi_2665 0.42 +0.5
3,162,768 + Echvi_2665 0.43 -1.2
3,162,768 + Echvi_2665 0.43 -0.4
3,162,768 + Echvi_2665 0.43 -0.3
3,162,768 + Echvi_2665 0.43 -0.3
3,162,769 - Echvi_2665 0.43 -0.6
3,162,769 - Echvi_2665 0.43 +1.0
3,162,838 + Echvi_2665 0.48 +0.1
3,162,838 + Echvi_2665 0.48 -0.4
3,162,838 + Echvi_2665 0.48 +0.9
3,162,839 - Echvi_2665 0.48 -1.1
3,162,839 - Echvi_2665 0.48 +0.4
3,162,839 - Echvi_2665 0.48 +0.2
3,162,839 - Echvi_2665 0.48 +0.3
3,162,839 - Echvi_2665 0.48 +0.8
3,162,839 - Echvi_2665 0.48 +0.4
3,162,840 + Echvi_2665 0.48 -1.7
3,162,863 - Echvi_2665 0.50 -1.6
3,162,863 - Echvi_2665 0.50 -0.1
3,162,910 + Echvi_2665 0.53 -0.9

Or see this region's nucleotide sequence