Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_2385

Experiment: m.b. Cisplatin 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_2384 and Echvi_2385 are separated by 194 nucleotidesEchvi_2385 and Echvi_2386 are separated by 340 nucleotidesEchvi_2386 and Echvi_2387 are separated by 45 nucleotides Echvi_2384: Echvi_2384 - GSCFA family., at 2,828,635 to 2,829,615 _2384 Echvi_2385: Echvi_2385 - hypothetical protein, at 2,829,810 to 2,830,058 _2385 Echvi_2386: Echvi_2386 - ribosomal protein L9, at 2,830,399 to 2,830,842 _2386 Echvi_2387: Echvi_2387 - ribosomal protein S18, at 2,830,888 to 2,831,139 _2387 Position (kb) 2829 2830 2831Strain fitness (log2 ratio) -2 -1 0 1at 2828.842 kb on - strand, within Echvi_2384at 2828.861 kb on + strand, within Echvi_2384at 2828.861 kb on + strand, within Echvi_2384at 2828.862 kb on - strand, within Echvi_2384at 2828.903 kb on + strand, within Echvi_2384at 2828.943 kb on - strand, within Echvi_2384at 2829.001 kb on + strand, within Echvi_2384at 2829.001 kb on + strand, within Echvi_2384at 2829.133 kb on + strand, within Echvi_2384at 2829.134 kb on - strand, within Echvi_2384at 2829.134 kb on - strand, within Echvi_2384at 2829.224 kb on + strand, within Echvi_2384at 2829.224 kb on + strand, within Echvi_2384at 2829.225 kb on - strand, within Echvi_2384at 2829.225 kb on - strand, within Echvi_2384at 2829.328 kb on - strand, within Echvi_2384at 2829.359 kb on + strand, within Echvi_2384at 2829.360 kb on - strand, within Echvi_2384at 2829.442 kb on + strand, within Echvi_2384at 2829.442 kb on + strand, within Echvi_2384at 2829.443 kb on - strand, within Echvi_2384at 2829.519 kb on + strandat 2829.547 kb on - strandat 2829.570 kb on + strandat 2829.608 kb on - strandat 2829.615 kb on + strandat 2829.662 kb on - strandat 2829.781 kb on + strandat 2829.821 kb on + strandat 2829.822 kb on - strandat 2829.822 kb on - strandat 2829.822 kb on - strandat 2829.859 kb on + strand, within Echvi_2385at 2830.016 kb on + strand, within Echvi_2385at 2830.176 kb on + strandat 2830.204 kb on + strandat 2830.204 kb on + strandat 2830.204 kb on + strandat 2830.377 kb on + strandat 2830.453 kb on + strand, within Echvi_2386

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml
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2,828,842 - Echvi_2384 0.21 +1.5
2,828,861 + Echvi_2384 0.23 +0.4
2,828,861 + Echvi_2384 0.23 +0.7
2,828,862 - Echvi_2384 0.23 -0.0
2,828,903 + Echvi_2384 0.27 +1.2
2,828,943 - Echvi_2384 0.31 -1.7
2,829,001 + Echvi_2384 0.37 -0.4
2,829,001 + Echvi_2384 0.37 -2.0
2,829,133 + Echvi_2384 0.51 -0.6
2,829,134 - Echvi_2384 0.51 -0.8
2,829,134 - Echvi_2384 0.51 +0.1
2,829,224 + Echvi_2384 0.60 -0.9
2,829,224 + Echvi_2384 0.60 -1.2
2,829,225 - Echvi_2384 0.60 -0.2
2,829,225 - Echvi_2384 0.60 -1.7
2,829,328 - Echvi_2384 0.71 +1.1
2,829,359 + Echvi_2384 0.74 -0.9
2,829,360 - Echvi_2384 0.74 +0.3
2,829,442 + Echvi_2384 0.82 +1.1
2,829,442 + Echvi_2384 0.82 -1.1
2,829,443 - Echvi_2384 0.82 +0.7
2,829,519 + -0.0
2,829,547 - +0.5
2,829,570 + -0.4
2,829,608 - -0.9
2,829,615 + -0.6
2,829,662 - +1.3
2,829,781 + +0.5
2,829,821 + -0.5
2,829,822 - -0.5
2,829,822 - -1.0
2,829,822 - -0.0
2,829,859 + Echvi_2385 0.20 -1.4
2,830,016 + Echvi_2385 0.83 -0.7
2,830,176 + +1.2
2,830,204 + +0.0
2,830,204 + +1.4
2,830,204 + -0.8
2,830,377 + -0.0
2,830,453 + Echvi_2386 0.12 -0.8

Or see this region's nucleotide sequence