Experiment: m.b. Cisplatin 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_2058 and Echvi_2059 are separated by 163 nucleotides Echvi_2059 and Echvi_2060 are separated by 19 nucleotides Echvi_2060 and Echvi_2061 are separated by 131 nucleotides
Echvi_2058: Echvi_2058 - ketol-acid reductoisomerase, at 2,427,016 to 2,428,059
_2058
Echvi_2059: Echvi_2059 - 3-isopropylmalate dehydratase, large subunit, at 2,428,223 to 2,429,620
_2059
Echvi_2060: Echvi_2060 - 3-isopropylmalate dehydratase, small subunit, at 2,429,640 to 2,430,233
_2060
Echvi_2061: Echvi_2061 - Isopropylmalate/homocitrate/citramalate synthases, at 2,430,365 to 2,431,879
_2061
Position (kb)
2428
2429
2430 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2427.288 kb on + strand, within Echvi_2058 at 2427.288 kb on + strand, within Echvi_2058 at 2427.288 kb on + strand, within Echvi_2058 at 2427.336 kb on + strand, within Echvi_2058 at 2427.400 kb on + strand, within Echvi_2058 at 2427.401 kb on - strand, within Echvi_2058 at 2427.452 kb on + strand, within Echvi_2058 at 2427.529 kb on + strand, within Echvi_2058 at 2427.599 kb on + strand, within Echvi_2058 at 2427.695 kb on - strand, within Echvi_2058 at 2427.826 kb on - strand, within Echvi_2058 at 2427.884 kb on + strand, within Echvi_2058 at 2427.899 kb on - strand, within Echvi_2058 at 2427.930 kb on + strand, within Echvi_2058 at 2427.963 kb on + strand at 2427.963 kb on + strand at 2427.995 kb on + strand at 2427.995 kb on + strand at 2428.040 kb on + strand at 2428.041 kb on - strand at 2428.114 kb on + strand at 2428.116 kb on + strand at 2428.123 kb on + strand at 2428.123 kb on + strand at 2428.180 kb on + strand at 2428.180 kb on + strand at 2428.377 kb on + strand at 2428.377 kb on + strand, within Echvi_2059 at 2428.672 kb on - strand, within Echvi_2059 at 2428.696 kb on + strand, within Echvi_2059 at 2428.697 kb on - strand, within Echvi_2059 at 2429.093 kb on + strand, within Echvi_2059 at 2429.094 kb on - strand, within Echvi_2059 at 2429.132 kb on - strand, within Echvi_2059 at 2429.401 kb on + strand, within Echvi_2059 at 2429.402 kb on - strand, within Echvi_2059 at 2429.486 kb on - strand at 2429.677 kb on + strand at 2430.181 kb on - strand at 2430.273 kb on - strand at 2430.324 kb on + strand at 2430.325 kb on - strand at 2430.331 kb on + strand at 2430.331 kb on + strand at 2430.510 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml remove 2,427,288 + Echvi_2058 0.26 -0.7 2,427,288 + Echvi_2058 0.26 -0.8 2,427,288 + Echvi_2058 0.26 -0.6 2,427,336 + Echvi_2058 0.31 +0.2 2,427,400 + Echvi_2058 0.37 -0.9 2,427,401 - Echvi_2058 0.37 +0.9 2,427,452 + Echvi_2058 0.42 -0.5 2,427,529 + Echvi_2058 0.49 -2.5 2,427,599 + Echvi_2058 0.56 +0.1 2,427,695 - Echvi_2058 0.65 -0.5 2,427,826 - Echvi_2058 0.78 -1.2 2,427,884 + Echvi_2058 0.83 -0.0 2,427,899 - Echvi_2058 0.85 -0.3 2,427,930 + Echvi_2058 0.88 -1.2 2,427,963 + -0.3 2,427,963 + -0.1 2,427,995 + -0.6 2,427,995 + -1.0 2,428,040 + +0.2 2,428,041 - -1.8 2,428,114 + +0.4 2,428,116 + -0.7 2,428,123 + -0.8 2,428,123 + -0.5 2,428,180 + -0.6 2,428,180 + -0.8 2,428,377 + +0.5 2,428,377 + Echvi_2059 0.11 +0.5 2,428,672 - Echvi_2059 0.32 +1.5 2,428,696 + Echvi_2059 0.34 -1.3 2,428,697 - Echvi_2059 0.34 -0.0 2,429,093 + Echvi_2059 0.62 -0.9 2,429,094 - Echvi_2059 0.62 +0.1 2,429,132 - Echvi_2059 0.65 +1.3 2,429,401 + Echvi_2059 0.84 -0.5 2,429,402 - Echvi_2059 0.84 +2.2 2,429,486 - -0.5 2,429,677 + +0.5 2,430,181 - -1.1 2,430,273 - -0.2 2,430,324 + -1.6 2,430,325 - -0.1 2,430,331 + +0.8 2,430,331 + +0.0 2,430,510 + -2.8
Or see this region's nucleotide sequence