Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_1157

Experiment: m.b. Cisplatin 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_1156 and Echvi_1157 are separated by 363 nucleotidesEchvi_1157 and Echvi_1158 are separated by 89 nucleotidesEchvi_1158 and Echvi_1159 are separated by 25 nucleotides Echvi_1156: Echvi_1156 - recF protein, at 1,323,489 to 1,324,595 _1156 Echvi_1157: Echvi_1157 - hypothetical protein, at 1,324,959 to 1,325,318 _1157 Echvi_1158: Echvi_1158 - nicotinate-nucleotide pyrophosphorylase, at 1,325,408 to 1,326,265 _1158 Echvi_1159: Echvi_1159 - Response regulator of the LytR/AlgR family, at 1,326,291 to 1,327,061 _1159 Position (kb) 1324 1325 1326Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1323.961 kb on + strand, within Echvi_1156at 1323.972 kb on + strand, within Echvi_1156at 1323.984 kb on - strand, within Echvi_1156at 1323.993 kb on + strand, within Echvi_1156at 1323.993 kb on + strand, within Echvi_1156at 1323.994 kb on - strand, within Echvi_1156at 1323.995 kb on + strand, within Echvi_1156at 1324.015 kb on + strand, within Echvi_1156at 1324.015 kb on + strand, within Echvi_1156at 1324.016 kb on - strand, within Echvi_1156at 1324.135 kb on + strand, within Echvi_1156at 1324.135 kb on + strand, within Echvi_1156at 1324.136 kb on - strand, within Echvi_1156at 1324.157 kb on - strand, within Echvi_1156at 1324.233 kb on - strand, within Echvi_1156at 1324.271 kb on + strand, within Echvi_1156at 1324.292 kb on - strand, within Echvi_1156at 1324.292 kb on - strand, within Echvi_1156at 1324.304 kb on + strand, within Echvi_1156at 1324.436 kb on + strand, within Echvi_1156at 1324.596 kb on - strandat 1324.607 kb on - strandat 1324.613 kb on + strandat 1324.614 kb on - strandat 1324.619 kb on - strandat 1324.633 kb on - strandat 1324.633 kb on - strandat 1324.633 kb on - strandat 1324.650 kb on - strandat 1324.657 kb on + strandat 1324.658 kb on - strandat 1324.662 kb on - strandat 1324.676 kb on + strandat 1324.690 kb on + strandat 1324.691 kb on - strandat 1324.691 kb on - strandat 1324.691 kb on - strandat 1324.701 kb on + strandat 1324.787 kb on - strandat 1324.810 kb on + strandat 1324.854 kb on + strandat 1324.912 kb on + strandat 1324.912 kb on + strandat 1324.912 kb on + strandat 1324.924 kb on + strandat 1324.925 kb on - strandat 1324.925 kb on - strandat 1324.925 kb on - strandat 1324.925 kb on - strandat 1324.945 kb on + strandat 1324.945 kb on + strandat 1324.945 kb on + strandat 1324.952 kb on - strandat 1325.018 kb on - strand, within Echvi_1157at 1325.021 kb on + strand, within Echvi_1157at 1325.021 kb on + strand, within Echvi_1157at 1325.022 kb on - strand, within Echvi_1157at 1325.022 kb on - strand, within Echvi_1157at 1325.022 kb on - strand, within Echvi_1157at 1325.024 kb on - strand, within Echvi_1157at 1325.077 kb on + strand, within Echvi_1157at 1325.077 kb on + strand, within Echvi_1157at 1325.083 kb on + strand, within Echvi_1157at 1325.104 kb on - strand, within Echvi_1157at 1325.187 kb on - strand, within Echvi_1157at 1325.203 kb on + strand, within Echvi_1157at 1325.204 kb on - strand, within Echvi_1157at 1325.223 kb on + strand, within Echvi_1157at 1325.237 kb on + strand, within Echvi_1157at 1325.402 kb on + strandat 1325.421 kb on - strandat 1325.424 kb on + strandat 1325.449 kb on + strandat 1325.539 kb on - strand, within Echvi_1158at 1325.539 kb on - strand, within Echvi_1158at 1325.600 kb on + strand, within Echvi_1158at 1325.601 kb on - strand, within Echvi_1158at 1325.649 kb on + strand, within Echvi_1158at 1325.650 kb on - strand, within Echvi_1158at 1325.695 kb on + strand, within Echvi_1158at 1325.746 kb on + strand, within Echvi_1158at 1325.746 kb on + strand, within Echvi_1158at 1325.747 kb on - strand, within Echvi_1158at 1325.764 kb on + strand, within Echvi_1158at 1325.765 kb on - strand, within Echvi_1158at 1325.765 kb on - strand, within Echvi_1158at 1325.765 kb on - strand, within Echvi_1158at 1325.765 kb on - strand, within Echvi_1158at 1325.771 kb on - strand, within Echvi_1158at 1325.895 kb on - strand, within Echvi_1158at 1325.904 kb on + strand, within Echvi_1158at 1325.904 kb on + strand, within Echvi_1158at 1325.953 kb on + strand, within Echvi_1158at 1325.953 kb on + strand, within Echvi_1158at 1326.070 kb on + strand, within Echvi_1158at 1326.071 kb on - strand, within Echvi_1158at 1326.071 kb on - strand, within Echvi_1158at 1326.082 kb on + strand, within Echvi_1158at 1326.082 kb on + strand, within Echvi_1158at 1326.090 kb on - strand, within Echvi_1158at 1326.128 kb on - strand, within Echvi_1158at 1326.128 kb on - strand, within Echvi_1158at 1326.202 kb on + strandat 1326.202 kb on + strandat 1326.203 kb on - strandat 1326.281 kb on + strandat 1326.282 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml
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1,323,961 + Echvi_1156 0.43 -3.5
1,323,972 + Echvi_1156 0.44 -3.0
1,323,984 - Echvi_1156 0.45 -2.4
1,323,993 + Echvi_1156 0.46 -1.7
1,323,993 + Echvi_1156 0.46 -2.4
1,323,994 - Echvi_1156 0.46 -0.8
1,323,995 + Echvi_1156 0.46 -1.7
1,324,015 + Echvi_1156 0.48 -2.4
1,324,015 + Echvi_1156 0.48 -2.2
1,324,016 - Echvi_1156 0.48 -3.6
1,324,135 + Echvi_1156 0.58 -3.3
1,324,135 + Echvi_1156 0.58 -1.7
1,324,136 - Echvi_1156 0.58 +0.3
1,324,157 - Echvi_1156 0.60 -1.2
1,324,233 - Echvi_1156 0.67 +0.3
1,324,271 + Echvi_1156 0.71 -2.6
1,324,292 - Echvi_1156 0.73 -1.8
1,324,292 - Echvi_1156 0.73 -4.1
1,324,304 + Echvi_1156 0.74 -2.2
1,324,436 + Echvi_1156 0.86 -4.3
1,324,596 - -1.3
1,324,607 - +0.9
1,324,613 + -0.4
1,324,614 - -0.3
1,324,619 - -0.9
1,324,633 - -1.7
1,324,633 - -1.6
1,324,633 - -2.9
1,324,650 - -0.4
1,324,657 + -0.5
1,324,658 - +0.7
1,324,662 - -0.1
1,324,676 + +0.5
1,324,690 + -0.0
1,324,691 - +0.1
1,324,691 - -1.3
1,324,691 - -1.5
1,324,701 + -0.2
1,324,787 - -2.0
1,324,810 + +0.8
1,324,854 + +0.4
1,324,912 + -0.5
1,324,912 + -1.1
1,324,912 + -0.0
1,324,924 + +0.1
1,324,925 - -3.0
1,324,925 - -0.4
1,324,925 - -0.9
1,324,925 - -2.8
1,324,945 + +1.4
1,324,945 + +0.5
1,324,945 + -0.0
1,324,952 - -2.5
1,325,018 - Echvi_1157 0.16 -2.2
1,325,021 + Echvi_1157 0.17 +0.8
1,325,021 + Echvi_1157 0.17 +0.4
1,325,022 - Echvi_1157 0.17 -1.3
1,325,022 - Echvi_1157 0.17 -2.4
1,325,022 - Echvi_1157 0.17 -2.6
1,325,024 - Echvi_1157 0.18 -2.8
1,325,077 + Echvi_1157 0.33 +0.4
1,325,077 + Echvi_1157 0.33 -1.4
1,325,083 + Echvi_1157 0.34 +2.3
1,325,104 - Echvi_1157 0.40 +2.6
1,325,187 - Echvi_1157 0.63 -1.4
1,325,203 + Echvi_1157 0.68 +1.1
1,325,204 - Echvi_1157 0.68 -1.7
1,325,223 + Echvi_1157 0.73 +0.4
1,325,237 + Echvi_1157 0.77 -1.8
1,325,402 + -0.9
1,325,421 - -0.4
1,325,424 + -1.1
1,325,449 + +0.3
1,325,539 - Echvi_1158 0.15 -0.5
1,325,539 - Echvi_1158 0.15 +0.0
1,325,600 + Echvi_1158 0.22 -0.2
1,325,601 - Echvi_1158 0.22 +0.6
1,325,649 + Echvi_1158 0.28 -2.0
1,325,650 - Echvi_1158 0.28 +0.9
1,325,695 + Echvi_1158 0.33 -1.0
1,325,746 + Echvi_1158 0.39 -2.7
1,325,746 + Echvi_1158 0.39 -1.8
1,325,747 - Echvi_1158 0.40 -1.9
1,325,764 + Echvi_1158 0.41 -0.4
1,325,765 - Echvi_1158 0.42 -0.5
1,325,765 - Echvi_1158 0.42 +0.2
1,325,765 - Echvi_1158 0.42 +0.2
1,325,765 - Echvi_1158 0.42 +1.2
1,325,771 - Echvi_1158 0.42 +0.3
1,325,895 - Echvi_1158 0.57 +0.8
1,325,904 + Echvi_1158 0.58 -0.6
1,325,904 + Echvi_1158 0.58 +2.6
1,325,953 + Echvi_1158 0.64 -1.6
1,325,953 + Echvi_1158 0.64 +1.3
1,326,070 + Echvi_1158 0.77 +0.0
1,326,071 - Echvi_1158 0.77 -0.9
1,326,071 - Echvi_1158 0.77 -0.5
1,326,082 + Echvi_1158 0.79 -0.2
1,326,082 + Echvi_1158 0.79 -0.9
1,326,090 - Echvi_1158 0.79 -0.0
1,326,128 - Echvi_1158 0.84 +1.1
1,326,128 - Echvi_1158 0.84 -1.3
1,326,202 + +0.6
1,326,202 + -0.1
1,326,203 - -0.8
1,326,281 + -0.2
1,326,282 - +0.5

Or see this region's nucleotide sequence