Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0627

Experiment: m.b. Cisplatin 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0626 and Echvi_0627 are separated by 43 nucleotidesEchvi_0627 and Echvi_0628 are separated by 50 nucleotides Echvi_0626: Echvi_0626 - hypothetical protein, at 703,620 to 704,687 _0626 Echvi_0627: Echvi_0627 - hypothetical protein, at 704,731 to 706,461 _0627 Echvi_0628: Echvi_0628 - putative oxygen-independent coproporphyrinogen III oxidase, at 706,512 to 707,636 _0628 Position (kb) 704 705 706 707Strain fitness (log2 ratio) -2 -1 0 1 2at 703.740 kb on + strand, within Echvi_0626at 703.741 kb on - strand, within Echvi_0626at 703.780 kb on + strand, within Echvi_0626at 703.840 kb on + strand, within Echvi_0626at 703.872 kb on + strand, within Echvi_0626at 703.915 kb on + strand, within Echvi_0626at 703.951 kb on - strand, within Echvi_0626at 703.951 kb on - strand, within Echvi_0626at 703.967 kb on + strand, within Echvi_0626at 703.992 kb on + strand, within Echvi_0626at 703.992 kb on + strand, within Echvi_0626at 703.998 kb on + strand, within Echvi_0626at 704.037 kb on + strand, within Echvi_0626at 704.037 kb on + strand, within Echvi_0626at 704.037 kb on + strand, within Echvi_0626at 704.038 kb on - strand, within Echvi_0626at 704.090 kb on + strand, within Echvi_0626at 704.091 kb on - strand, within Echvi_0626at 704.091 kb on - strand, within Echvi_0626at 704.213 kb on - strand, within Echvi_0626at 704.213 kb on - strand, within Echvi_0626at 704.244 kb on + strand, within Echvi_0626at 704.361 kb on - strand, within Echvi_0626at 704.395 kb on + strand, within Echvi_0626at 704.395 kb on + strand, within Echvi_0626at 704.396 kb on - strand, within Echvi_0626at 704.443 kb on - strand, within Echvi_0626at 704.443 kb on - strand, within Echvi_0626at 704.462 kb on + strand, within Echvi_0626at 704.462 kb on + strand, within Echvi_0626at 704.463 kb on - strand, within Echvi_0626at 704.485 kb on + strand, within Echvi_0626at 704.485 kb on + strand, within Echvi_0626at 704.485 kb on + strand, within Echvi_0626at 704.486 kb on - strand, within Echvi_0626at 704.486 kb on - strand, within Echvi_0626at 704.612 kb on - strandat 704.641 kb on + strandat 704.642 kb on - strandat 704.642 kb on - strandat 704.688 kb on - strandat 704.697 kb on + strandat 704.697 kb on + strandat 704.718 kb on - strandat 704.726 kb on + strandat 704.745 kb on + strandat 704.746 kb on - strandat 704.747 kb on + strandat 704.748 kb on - strandat 704.748 kb on - strandat 704.768 kb on + strandat 704.769 kb on - strandat 704.772 kb on + strandat 704.773 kb on - strandat 704.779 kb on + strandat 704.960 kb on + strand, within Echvi_0627at 704.984 kb on + strand, within Echvi_0627at 704.984 kb on + strand, within Echvi_0627at 704.985 kb on - strand, within Echvi_0627at 705.027 kb on + strand, within Echvi_0627at 705.027 kb on + strand, within Echvi_0627at 705.054 kb on - strand, within Echvi_0627at 705.054 kb on - strand, within Echvi_0627at 705.140 kb on + strand, within Echvi_0627at 705.173 kb on - strand, within Echvi_0627at 705.219 kb on + strand, within Echvi_0627at 705.219 kb on + strand, within Echvi_0627at 705.220 kb on - strand, within Echvi_0627at 705.220 kb on - strand, within Echvi_0627at 705.220 kb on - strand, within Echvi_0627at 705.220 kb on - strand, within Echvi_0627at 705.222 kb on + strand, within Echvi_0627at 705.223 kb on - strand, within Echvi_0627at 705.223 kb on - strand, within Echvi_0627at 705.223 kb on - strand, within Echvi_0627at 705.224 kb on + strand, within Echvi_0627at 705.309 kb on - strand, within Echvi_0627at 705.327 kb on - strand, within Echvi_0627at 705.330 kb on + strand, within Echvi_0627at 705.330 kb on + strand, within Echvi_0627at 705.330 kb on + strand, within Echvi_0627at 705.331 kb on - strand, within Echvi_0627at 705.331 kb on - strand, within Echvi_0627at 705.331 kb on - strand, within Echvi_0627at 705.331 kb on - strand, within Echvi_0627at 705.331 kb on - strand, within Echvi_0627at 705.349 kb on + strand, within Echvi_0627at 705.431 kb on + strand, within Echvi_0627at 705.432 kb on - strand, within Echvi_0627at 705.477 kb on + strand, within Echvi_0627at 705.529 kb on + strand, within Echvi_0627at 705.530 kb on - strand, within Echvi_0627at 705.530 kb on - strand, within Echvi_0627at 705.565 kb on + strand, within Echvi_0627at 705.584 kb on + strand, within Echvi_0627at 705.585 kb on - strand, within Echvi_0627at 705.614 kb on + strand, within Echvi_0627at 705.615 kb on - strand, within Echvi_0627at 705.641 kb on + strand, within Echvi_0627at 705.641 kb on + strand, within Echvi_0627at 705.642 kb on - strand, within Echvi_0627at 705.678 kb on + strand, within Echvi_0627at 705.711 kb on + strand, within Echvi_0627at 705.714 kb on + strand, within Echvi_0627at 705.714 kb on + strand, within Echvi_0627at 705.715 kb on - strand, within Echvi_0627at 705.755 kb on + strand, within Echvi_0627at 705.756 kb on - strand, within Echvi_0627at 705.808 kb on - strand, within Echvi_0627at 705.809 kb on + strand, within Echvi_0627at 705.810 kb on - strand, within Echvi_0627at 705.810 kb on - strand, within Echvi_0627at 705.810 kb on - strand, within Echvi_0627at 705.810 kb on - strand, within Echvi_0627at 705.810 kb on - strand, within Echvi_0627at 705.831 kb on + strand, within Echvi_0627at 705.831 kb on + strand, within Echvi_0627at 705.831 kb on + strand, within Echvi_0627at 705.832 kb on - strand, within Echvi_0627at 705.832 kb on - strand, within Echvi_0627at 705.832 kb on - strand, within Echvi_0627at 705.967 kb on + strand, within Echvi_0627at 706.015 kb on - strand, within Echvi_0627at 706.015 kb on - strand, within Echvi_0627at 706.079 kb on - strand, within Echvi_0627at 706.087 kb on + strand, within Echvi_0627at 706.087 kb on + strand, within Echvi_0627at 706.087 kb on + strand, within Echvi_0627at 706.087 kb on + strand, within Echvi_0627at 706.087 kb on + strand, within Echvi_0627at 706.087 kb on + strand, within Echvi_0627at 706.088 kb on - strand, within Echvi_0627at 706.228 kb on - strand, within Echvi_0627at 706.228 kb on - strand, within Echvi_0627at 706.344 kb on + strandat 706.388 kb on + strandat 706.388 kb on + strandat 706.388 kb on + strandat 706.414 kb on - strandat 706.441 kb on + strandat 706.441 kb on + strandat 706.441 kb on + strandat 706.444 kb on - strandat 706.444 kb on - strandat 706.522 kb on + strandat 706.522 kb on + strandat 706.522 kb on + strandat 706.522 kb on + strandat 706.522 kb on + strandat 706.522 kb on + strandat 706.523 kb on - strandat 706.523 kb on - strandat 706.523 kb on - strandat 706.523 kb on - strandat 706.524 kb on + strandat 706.524 kb on + strandat 706.525 kb on - strandat 706.525 kb on - strandat 706.525 kb on - strandat 706.526 kb on + strandat 706.526 kb on + strandat 706.527 kb on - strandat 706.532 kb on + strandat 706.647 kb on + strand, within Echvi_0628at 706.819 kb on + strand, within Echvi_0628at 706.819 kb on + strand, within Echvi_0628at 706.820 kb on - strand, within Echvi_0628at 706.820 kb on - strand, within Echvi_0628at 706.885 kb on + strand, within Echvi_0628at 706.896 kb on + strand, within Echvi_0628at 706.899 kb on - strand, within Echvi_0628at 706.987 kb on - strand, within Echvi_0628at 707.070 kb on + strand, within Echvi_0628at 707.070 kb on + strand, within Echvi_0628at 707.083 kb on + strand, within Echvi_0628at 707.083 kb on + strand, within Echvi_0628at 707.083 kb on + strand, within Echvi_0628at 707.084 kb on - strand, within Echvi_0628at 707.084 kb on - strand, within Echvi_0628at 707.199 kb on + strand, within Echvi_0628at 707.262 kb on + strand, within Echvi_0628at 707.262 kb on + strand, within Echvi_0628at 707.273 kb on + strand, within Echvi_0628at 707.273 kb on + strand, within Echvi_0628at 707.274 kb on - strand, within Echvi_0628at 707.274 kb on - strand, within Echvi_0628at 707.274 kb on - strand, within Echvi_0628at 707.356 kb on - strand, within Echvi_0628at 707.438 kb on + strand, within Echvi_0628at 707.438 kb on + strand, within Echvi_0628at 707.438 kb on + strand, within Echvi_0628

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml
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703,740 + Echvi_0626 0.11 +0.1
703,741 - Echvi_0626 0.11 -0.0
703,780 + Echvi_0626 0.15 -1.6
703,840 + Echvi_0626 0.21 +0.3
703,872 + Echvi_0626 0.24 +0.7
703,915 + Echvi_0626 0.28 +0.9
703,951 - Echvi_0626 0.31 +0.9
703,951 - Echvi_0626 0.31 +1.1
703,967 + Echvi_0626 0.32 +0.8
703,992 + Echvi_0626 0.35 +0.4
703,992 + Echvi_0626 0.35 +1.0
703,998 + Echvi_0626 0.35 +1.0
704,037 + Echvi_0626 0.39 +0.9
704,037 + Echvi_0626 0.39 +0.3
704,037 + Echvi_0626 0.39 +1.2
704,038 - Echvi_0626 0.39 +1.6
704,090 + Echvi_0626 0.44 -1.3
704,091 - Echvi_0626 0.44 +2.1
704,091 - Echvi_0626 0.44 +0.0
704,213 - Echvi_0626 0.56 +1.0
704,213 - Echvi_0626 0.56 +0.4
704,244 + Echvi_0626 0.58 +0.7
704,361 - Echvi_0626 0.69 -0.0
704,395 + Echvi_0626 0.73 +1.1
704,395 + Echvi_0626 0.73 +0.4
704,396 - Echvi_0626 0.73 +0.3
704,443 - Echvi_0626 0.77 -0.9
704,443 - Echvi_0626 0.77 +1.7
704,462 + Echvi_0626 0.79 +0.4
704,462 + Echvi_0626 0.79 +1.0
704,463 - Echvi_0626 0.79 +1.3
704,485 + Echvi_0626 0.81 +0.1
704,485 + Echvi_0626 0.81 +2.0
704,485 + Echvi_0626 0.81 +1.0
704,486 - Echvi_0626 0.81 +0.5
704,486 - Echvi_0626 0.81 +1.8
704,612 - +0.7
704,641 + +2.2
704,642 - +1.5
704,642 - +1.7
704,688 - +0.5
704,697 + +1.0
704,697 + +0.9
704,718 - -0.3
704,726 + +0.5
704,745 + +1.2
704,746 - -0.4
704,747 + +0.1
704,748 - -0.9
704,748 - -0.2
704,768 + +0.1
704,769 - -0.5
704,772 + -0.5
704,773 - -0.3
704,779 + -0.7
704,960 + Echvi_0627 0.13 +0.6
704,984 + Echvi_0627 0.15 -0.2
704,984 + Echvi_0627 0.15 +0.7
704,985 - Echvi_0627 0.15 -0.5
705,027 + Echvi_0627 0.17 +0.5
705,027 + Echvi_0627 0.17 +0.3
705,054 - Echvi_0627 0.19 +1.2
705,054 - Echvi_0627 0.19 -0.4
705,140 + Echvi_0627 0.24 +0.6
705,173 - Echvi_0627 0.26 -0.2
705,219 + Echvi_0627 0.28 -0.0
705,219 + Echvi_0627 0.28 -1.6
705,220 - Echvi_0627 0.28 -0.2
705,220 - Echvi_0627 0.28 +0.9
705,220 - Echvi_0627 0.28 -1.7
705,220 - Echvi_0627 0.28 -0.6
705,222 + Echvi_0627 0.28 +0.1
705,223 - Echvi_0627 0.28 +1.3
705,223 - Echvi_0627 0.28 +2.2
705,223 - Echvi_0627 0.28 -0.9
705,224 + Echvi_0627 0.28 +0.1
705,309 - Echvi_0627 0.33 +0.7
705,327 - Echvi_0627 0.34 -0.6
705,330 + Echvi_0627 0.35 +0.3
705,330 + Echvi_0627 0.35 +0.2
705,330 + Echvi_0627 0.35 -0.1
705,331 - Echvi_0627 0.35 -1.2
705,331 - Echvi_0627 0.35 -1.2
705,331 - Echvi_0627 0.35 +0.4
705,331 - Echvi_0627 0.35 -0.4
705,331 - Echvi_0627 0.35 -0.5
705,349 + Echvi_0627 0.36 -0.1
705,431 + Echvi_0627 0.40 +0.9
705,432 - Echvi_0627 0.40 -1.8
705,477 + Echvi_0627 0.43 -0.5
705,529 + Echvi_0627 0.46 +1.4
705,530 - Echvi_0627 0.46 +0.3
705,530 - Echvi_0627 0.46 +0.3
705,565 + Echvi_0627 0.48 +1.3
705,584 + Echvi_0627 0.49 +0.5
705,585 - Echvi_0627 0.49 +1.0
705,614 + Echvi_0627 0.51 -0.9
705,615 - Echvi_0627 0.51 +2.1
705,641 + Echvi_0627 0.53 +0.7
705,641 + Echvi_0627 0.53 +0.6
705,642 - Echvi_0627 0.53 -0.1
705,678 + Echvi_0627 0.55 +0.3
705,711 + Echvi_0627 0.57 +1.3
705,714 + Echvi_0627 0.57 -2.1
705,714 + Echvi_0627 0.57 +2.0
705,715 - Echvi_0627 0.57 -0.7
705,755 + Echvi_0627 0.59 -0.4
705,756 - Echvi_0627 0.59 -0.9
705,808 - Echvi_0627 0.62 +1.1
705,809 + Echvi_0627 0.62 +0.3
705,810 - Echvi_0627 0.62 +0.5
705,810 - Echvi_0627 0.62 +1.0
705,810 - Echvi_0627 0.62 -1.0
705,810 - Echvi_0627 0.62 +0.5
705,810 - Echvi_0627 0.62 -0.7
705,831 + Echvi_0627 0.64 +0.4
705,831 + Echvi_0627 0.64 -0.1
705,831 + Echvi_0627 0.64 +0.4
705,832 - Echvi_0627 0.64 +0.3
705,832 - Echvi_0627 0.64 -0.0
705,832 - Echvi_0627 0.64 +0.3
705,967 + Echvi_0627 0.71 +1.0
706,015 - Echvi_0627 0.74 -1.3
706,015 - Echvi_0627 0.74 +0.5
706,079 - Echvi_0627 0.78 +0.4
706,087 + Echvi_0627 0.78 +1.2
706,087 + Echvi_0627 0.78 +0.4
706,087 + Echvi_0627 0.78 -1.8
706,087 + Echvi_0627 0.78 +1.8
706,087 + Echvi_0627 0.78 +0.2
706,087 + Echvi_0627 0.78 +0.7
706,088 - Echvi_0627 0.78 -0.4
706,228 - Echvi_0627 0.86 -0.9
706,228 - Echvi_0627 0.86 -1.3
706,344 + +0.1
706,388 + +0.6
706,388 + +0.3
706,388 + -0.9
706,414 - -2.1
706,441 + -0.4
706,441 + -0.7
706,441 + +0.6
706,444 - +0.3
706,444 - -0.5
706,522 + +0.8
706,522 + -0.1
706,522 + -0.9
706,522 + +0.2
706,522 + +0.8
706,522 + +0.9
706,523 - -1.8
706,523 - -0.4
706,523 - -1.8
706,523 - -0.4
706,524 + +0.2
706,524 + +0.2
706,525 - +1.7
706,525 - +0.3
706,525 - -0.6
706,526 + -0.4
706,526 + +0.2
706,527 - +0.2
706,532 + +0.8
706,647 + Echvi_0628 0.12 -0.5
706,819 + Echvi_0628 0.27 -0.5
706,819 + Echvi_0628 0.27 -0.4
706,820 - Echvi_0628 0.27 +0.1
706,820 - Echvi_0628 0.27 +0.3
706,885 + Echvi_0628 0.33 -1.5
706,896 + Echvi_0628 0.34 -0.5
706,899 - Echvi_0628 0.34 -0.6
706,987 - Echvi_0628 0.42 -0.1
707,070 + Echvi_0628 0.50 +0.3
707,070 + Echvi_0628 0.50 +0.2
707,083 + Echvi_0628 0.51 +0.6
707,083 + Echvi_0628 0.51 -1.0
707,083 + Echvi_0628 0.51 +0.2
707,084 - Echvi_0628 0.51 -0.0
707,084 - Echvi_0628 0.51 -0.4
707,199 + Echvi_0628 0.61 -1.2
707,262 + Echvi_0628 0.67 -0.3
707,262 + Echvi_0628 0.67 -0.3
707,273 + Echvi_0628 0.68 -0.2
707,273 + Echvi_0628 0.68 -0.2
707,274 - Echvi_0628 0.68 -0.3
707,274 - Echvi_0628 0.68 -2.2
707,274 - Echvi_0628 0.68 -0.4
707,356 - Echvi_0628 0.75 -0.1
707,438 + Echvi_0628 0.82 -0.5
707,438 + Echvi_0628 0.82 +0.2
707,438 + Echvi_0628 0.82 -0.6

Or see this region's nucleotide sequence