Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0511

Experiment: m.b. Cisplatin 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0510 and Echvi_0511 are separated by 199 nucleotidesEchvi_0511 and Echvi_0512 are separated by 325 nucleotides Echvi_0510: Echvi_0510 - Transcriptional regulators, at 570,261 to 571,283 _0510 Echvi_0511: Echvi_0511 - Superfamily II DNA and RNA helicases, at 571,483 to 572,733 _0511 Echvi_0512: Echvi_0512 - hypothetical protein, at 573,059 to 573,868 _0512 Position (kb) 571 572 573Strain fitness (log2 ratio) -2 -1 0 1at 570.487 kb on - strand, within Echvi_0510at 570.514 kb on + strand, within Echvi_0510at 570.543 kb on + strand, within Echvi_0510at 570.543 kb on + strand, within Echvi_0510at 570.543 kb on + strand, within Echvi_0510at 570.553 kb on + strand, within Echvi_0510at 570.553 kb on + strand, within Echvi_0510at 570.553 kb on + strand, within Echvi_0510at 570.554 kb on - strand, within Echvi_0510at 570.613 kb on + strand, within Echvi_0510at 570.694 kb on + strand, within Echvi_0510at 570.694 kb on + strand, within Echvi_0510at 570.694 kb on + strand, within Echvi_0510at 570.694 kb on + strand, within Echvi_0510at 570.694 kb on + strand, within Echvi_0510at 570.695 kb on - strand, within Echvi_0510at 570.695 kb on - strand, within Echvi_0510at 570.695 kb on - strand, within Echvi_0510at 570.779 kb on + strand, within Echvi_0510at 570.780 kb on - strand, within Echvi_0510at 570.892 kb on + strand, within Echvi_0510at 571.198 kb on + strandat 571.199 kb on - strandat 571.286 kb on + strandat 571.286 kb on + strandat 571.287 kb on - strandat 571.312 kb on - strandat 571.362 kb on + strandat 571.368 kb on + strandat 571.368 kb on + strandat 571.400 kb on + strandat 571.401 kb on - strandat 571.401 kb on - strandat 571.401 kb on - strandat 571.401 kb on - strandat 571.432 kb on - strandat 571.492 kb on - strandat 571.520 kb on + strandat 571.520 kb on + strandat 571.521 kb on - strandat 571.530 kb on - strandat 571.575 kb on + strandat 571.575 kb on + strandat 571.576 kb on - strandat 571.668 kb on + strand, within Echvi_0511at 571.668 kb on + strand, within Echvi_0511at 571.668 kb on + strand, within Echvi_0511at 571.849 kb on - strand, within Echvi_0511at 571.859 kb on + strand, within Echvi_0511at 572.004 kb on + strand, within Echvi_0511at 572.005 kb on - strand, within Echvi_0511at 572.150 kb on - strand, within Echvi_0511at 572.155 kb on + strand, within Echvi_0511at 572.156 kb on - strand, within Echvi_0511at 572.156 kb on - strand, within Echvi_0511at 572.158 kb on + strand, within Echvi_0511at 572.166 kb on + strand, within Echvi_0511at 572.167 kb on - strand, within Echvi_0511at 572.167 kb on - strand, within Echvi_0511at 572.197 kb on - strand, within Echvi_0511at 572.468 kb on - strand, within Echvi_0511at 572.578 kb on - strand, within Echvi_0511at 572.628 kb on + strandat 572.655 kb on + strandat 572.732 kb on - strandat 572.732 kb on - strandat 572.810 kb on + strandat 572.811 kb on - strandat 572.811 kb on - strandat 572.811 kb on - strandat 573.047 kb on - strandat 573.047 kb on - strandat 573.047 kb on - strandat 573.047 kb on - strandat 573.067 kb on + strandat 573.109 kb on - strandat 573.160 kb on + strand, within Echvi_0512at 573.160 kb on + strand, within Echvi_0512at 573.161 kb on - strand, within Echvi_0512at 573.161 kb on - strand, within Echvi_0512at 573.161 kb on - strand, within Echvi_0512at 573.161 kb on - strand, within Echvi_0512at 573.166 kb on + strand, within Echvi_0512at 573.167 kb on - strand, within Echvi_0512at 573.186 kb on + strand, within Echvi_0512at 573.222 kb on - strand, within Echvi_0512at 573.247 kb on + strand, within Echvi_0512at 573.311 kb on + strandat 573.311 kb on + strand, within Echvi_0512at 573.461 kb on + strand, within Echvi_0512at 573.464 kb on + strand, within Echvi_0512at 573.471 kb on + strand, within Echvi_0512at 573.493 kb on + strand, within Echvi_0512at 573.494 kb on - strand, within Echvi_0512at 573.505 kb on + strand, within Echvi_0512at 573.563 kb on + strand, within Echvi_0512at 573.642 kb on - strand, within Echvi_0512

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml
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570,487 - Echvi_0510 0.22 -2.7
570,514 + Echvi_0510 0.25 -0.3
570,543 + Echvi_0510 0.28 -2.4
570,543 + Echvi_0510 0.28 -1.1
570,543 + Echvi_0510 0.28 +0.6
570,553 + Echvi_0510 0.29 +0.2
570,553 + Echvi_0510 0.29 -0.3
570,553 + Echvi_0510 0.29 -0.4
570,554 - Echvi_0510 0.29 -0.7
570,613 + Echvi_0510 0.34 -0.1
570,694 + Echvi_0510 0.42 -1.8
570,694 + Echvi_0510 0.42 -1.2
570,694 + Echvi_0510 0.42 +0.4
570,694 + Echvi_0510 0.42 -0.2
570,694 + Echvi_0510 0.42 +0.0
570,695 - Echvi_0510 0.42 -1.0
570,695 - Echvi_0510 0.42 -0.1
570,695 - Echvi_0510 0.42 +1.0
570,779 + Echvi_0510 0.51 -0.5
570,780 - Echvi_0510 0.51 -0.4
570,892 + Echvi_0510 0.62 +0.4
571,198 + -1.1
571,199 - -0.7
571,286 + -0.6
571,286 + -0.7
571,287 - +0.3
571,312 - +0.1
571,362 + -1.0
571,368 + -1.0
571,368 + -0.4
571,400 + -1.9
571,401 - -0.3
571,401 - +1.0
571,401 - -1.4
571,401 - -1.7
571,432 - +0.6
571,492 - -0.1
571,520 + +0.1
571,520 + -0.3
571,521 - +0.5
571,530 - -0.3
571,575 + -0.0
571,575 + +0.3
571,576 - +1.0
571,668 + Echvi_0511 0.15 -0.6
571,668 + Echvi_0511 0.15 +0.6
571,668 + Echvi_0511 0.15 +1.1
571,849 - Echvi_0511 0.29 -0.1
571,859 + Echvi_0511 0.30 +0.1
572,004 + Echvi_0511 0.42 +0.4
572,005 - Echvi_0511 0.42 +0.9
572,150 - Echvi_0511 0.53 -0.3
572,155 + Echvi_0511 0.54 +0.6
572,156 - Echvi_0511 0.54 +0.5
572,156 - Echvi_0511 0.54 -1.1
572,158 + Echvi_0511 0.54 +0.2
572,166 + Echvi_0511 0.55 +0.6
572,167 - Echvi_0511 0.55 +0.8
572,167 - Echvi_0511 0.55 -0.4
572,197 - Echvi_0511 0.57 -0.1
572,468 - Echvi_0511 0.79 +0.1
572,578 - Echvi_0511 0.88 -0.9
572,628 + -1.3
572,655 + -1.1
572,732 - +0.2
572,732 - -0.4
572,810 + -0.2
572,811 - -0.2
572,811 - -0.4
572,811 - +0.9
573,047 - -0.3
573,047 - +0.1
573,047 - +0.4
573,047 - -0.3
573,067 + -0.1
573,109 - +0.3
573,160 + Echvi_0512 0.12 -0.6
573,160 + Echvi_0512 0.12 -0.5
573,161 - Echvi_0512 0.13 -0.3
573,161 - Echvi_0512 0.13 +0.7
573,161 - Echvi_0512 0.13 +0.4
573,161 - Echvi_0512 0.13 +0.0
573,166 + Echvi_0512 0.13 -0.2
573,167 - Echvi_0512 0.13 +0.2
573,186 + Echvi_0512 0.16 -0.1
573,222 - Echvi_0512 0.20 -0.2
573,247 + Echvi_0512 0.23 -0.3
573,311 + +0.3
573,311 + Echvi_0512 0.31 +0.5
573,461 + Echvi_0512 0.50 +0.1
573,464 + Echvi_0512 0.50 +0.2
573,471 + Echvi_0512 0.51 +0.2
573,493 + Echvi_0512 0.54 +0.1
573,494 - Echvi_0512 0.54 +0.5
573,505 + Echvi_0512 0.55 +0.2
573,563 + Echvi_0512 0.62 +0.9
573,642 - Echvi_0512 0.72 -1.7

Or see this region's nucleotide sequence