Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0456

Experiment: m.b. Cisplatin 0.025 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEchvi_0455 and Echvi_0456 are separated by 60 nucleotidesEchvi_0456 and Echvi_0457 overlap by 93 nucleotidesEchvi_0457 and Echvi_0458 overlap by 4 nucleotides Echvi_0455: Echvi_0455 - Uncharacterized protein conserved in bacteria, at 497,524 to 500,526 _0455 Echvi_0456: Echvi_0456 - hypothetical protein, at 500,587 to 500,934 _0456 Echvi_0457: Echvi_0457 - Domain of unknown function (DUF1814)., at 500,842 to 501,897 _0457 Echvi_0458: Echvi_0458 - hypothetical protein, at 501,894 to 502,664 _0458 Position (kb) 500 501Strain fitness (log2 ratio) -2 -1 0 1 2at 499.600 kb on + strand, within Echvi_0455at 499.607 kb on + strand, within Echvi_0455at 499.656 kb on + strand, within Echvi_0455at 499.656 kb on + strand, within Echvi_0455at 499.657 kb on - strand, within Echvi_0455at 499.657 kb on - strand, within Echvi_0455at 499.660 kb on - strand, within Echvi_0455at 499.660 kb on - strandat 499.692 kb on + strand, within Echvi_0455at 499.712 kb on + strand, within Echvi_0455at 499.712 kb on + strand, within Echvi_0455at 499.712 kb on + strand, within Echvi_0455at 499.713 kb on - strand, within Echvi_0455at 499.745 kb on + strand, within Echvi_0455at 499.831 kb on + strand, within Echvi_0455at 499.832 kb on - strand, within Echvi_0455at 499.864 kb on - strand, within Echvi_0455at 499.882 kb on + strand, within Echvi_0455at 499.882 kb on + strand, within Echvi_0455at 499.882 kb on + strand, within Echvi_0455at 499.883 kb on - strand, within Echvi_0455at 499.901 kb on + strand, within Echvi_0455at 499.901 kb on + strand, within Echvi_0455at 500.008 kb on + strand, within Echvi_0455at 500.008 kb on + strand, within Echvi_0455at 500.008 kb on + strand, within Echvi_0455at 500.008 kb on + strand, within Echvi_0455at 500.008 kb on + strand, within Echvi_0455at 500.008 kb on + strand, within Echvi_0455at 500.008 kb on + strand, within Echvi_0455at 500.009 kb on - strand, within Echvi_0455at 500.009 kb on - strand, within Echvi_0455at 500.009 kb on - strand, within Echvi_0455at 500.026 kb on - strand, within Echvi_0455at 500.026 kb on - strand, within Echvi_0455at 500.027 kb on + strand, within Echvi_0455at 500.027 kb on + strand, within Echvi_0455at 500.028 kb on - strand, within Echvi_0455at 500.028 kb on - strand, within Echvi_0455at 500.051 kb on - strand, within Echvi_0455at 500.051 kb on - strand, within Echvi_0455at 500.074 kb on + strand, within Echvi_0455at 500.074 kb on + strand, within Echvi_0455at 500.074 kb on + strand, within Echvi_0455at 500.075 kb on - strand, within Echvi_0455at 500.075 kb on - strand, within Echvi_0455at 500.085 kb on - strand, within Echvi_0455at 500.109 kb on - strand, within Echvi_0455at 500.144 kb on + strand, within Echvi_0455at 500.158 kb on - strand, within Echvi_0455at 500.163 kb on - strand, within Echvi_0455at 500.163 kb on - strand, within Echvi_0455at 500.227 kb on + strandat 500.273 kb on + strandat 500.273 kb on + strandat 500.273 kb on + strandat 500.273 kb on + strandat 500.274 kb on - strandat 500.274 kb on - strandat 500.274 kb on - strandat 500.283 kb on + strandat 500.283 kb on + strandat 500.284 kb on - strandat 500.284 kb on - strandat 500.286 kb on - strandat 500.286 kb on - strandat 500.294 kb on + strandat 500.294 kb on + strandat 500.295 kb on - strandat 500.295 kb on - strandat 500.295 kb on - strandat 500.313 kb on + strandat 500.318 kb on + strandat 500.337 kb on + strandat 500.337 kb on + strandat 500.338 kb on - strandat 500.338 kb on - strandat 500.339 kb on + strandat 500.340 kb on - strandat 500.340 kb on - strandat 500.340 kb on - strandat 500.342 kb on + strandat 500.361 kb on + strandat 500.369 kb on - strandat 500.384 kb on + strandat 500.384 kb on + strandat 500.385 kb on - strandat 500.419 kb on + strandat 500.419 kb on + strandat 500.419 kb on + strandat 500.429 kb on + strandat 500.501 kb on + strandat 500.502 kb on - strandat 500.504 kb on - strandat 500.518 kb on + strandat 500.519 kb on - strandat 500.519 kb on - strandat 500.522 kb on - strandat 500.522 kb on - strandat 500.522 kb on - strandat 500.522 kb on - strandat 500.527 kb on - strandat 500.527 kb on - strandat 500.540 kb on + strandat 500.540 kb on + strandat 500.540 kb on + strandat 500.540 kb on + strandat 500.586 kb on + strandat 500.633 kb on + strand, within Echvi_0456at 500.669 kb on + strand, within Echvi_0456at 500.706 kb on + strand, within Echvi_0456at 500.779 kb on + strand, within Echvi_0456at 500.779 kb on + strand, within Echvi_0456at 500.780 kb on - strand, within Echvi_0456at 500.811 kb on + strand, within Echvi_0456at 500.817 kb on - strand, within Echvi_0456at 500.858 kb on + strandat 500.859 kb on - strandat 500.859 kb on - strandat 500.880 kb on + strandat 500.975 kb on + strand, within Echvi_0457at 500.976 kb on - strand, within Echvi_0457at 500.998 kb on - strand, within Echvi_0457at 500.998 kb on - strand, within Echvi_0457at 501.001 kb on + strand, within Echvi_0457at 501.001 kb on + strand, within Echvi_0457at 501.001 kb on + strand, within Echvi_0457at 501.002 kb on - strand, within Echvi_0457at 501.005 kb on + strand, within Echvi_0457at 501.006 kb on - strand, within Echvi_0457at 501.025 kb on + strand, within Echvi_0457at 501.025 kb on + strand, within Echvi_0457at 501.025 kb on + strand, within Echvi_0457at 501.029 kb on - strand, within Echvi_0457at 501.059 kb on - strand, within Echvi_0457at 501.082 kb on + strand, within Echvi_0457at 501.124 kb on + strand, within Echvi_0457at 501.124 kb on + strand, within Echvi_0457at 501.125 kb on - strand, within Echvi_0457at 501.125 kb on - strand, within Echvi_0457at 501.125 kb on - strand, within Echvi_0457at 501.135 kb on + strand, within Echvi_0457at 501.154 kb on + strand, within Echvi_0457at 501.166 kb on - strand, within Echvi_0457at 501.172 kb on - strand, within Echvi_0457at 501.292 kb on + strand, within Echvi_0457at 501.292 kb on + strand, within Echvi_0457at 501.292 kb on + strand, within Echvi_0457at 501.292 kb on + strand, within Echvi_0457at 501.293 kb on - strand, within Echvi_0457at 501.373 kb on + strand, within Echvi_0457at 501.379 kb on - strand, within Echvi_0457at 501.499 kb on - strand, within Echvi_0457at 501.580 kb on - strand, within Echvi_0457at 501.580 kb on - strand, within Echvi_0457at 501.581 kb on + strand, within Echvi_0457at 501.591 kb on + strand, within Echvi_0457at 501.609 kb on + strand, within Echvi_0457at 501.609 kb on + strand, within Echvi_0457at 501.646 kb on - strand, within Echvi_0457at 501.652 kb on + strand, within Echvi_0457at 501.653 kb on - strand, within Echvi_0457at 501.676 kb on - strand, within Echvi_0457at 501.735 kb on + strand, within Echvi_0457at 501.736 kb on - strand, within Echvi_0457at 501.736 kb on - strand, within Echvi_0457at 501.736 kb on - strand, within Echvi_0457at 501.744 kb on + strand, within Echvi_0457at 501.744 kb on + strand, within Echvi_0457at 501.744 kb on + strand, within Echvi_0457at 501.745 kb on - strand, within Echvi_0457at 501.757 kb on + strand, within Echvi_0457at 501.853 kb on - strandat 501.877 kb on - strandat 501.893 kb on - strandat 501.901 kb on - strandat 501.924 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml
remove
499,600 + Echvi_0455 0.69 +0.5
499,607 + Echvi_0455 0.69 -0.7
499,656 + Echvi_0455 0.71 -0.0
499,656 + Echvi_0455 0.71 +0.2
499,657 - Echvi_0455 0.71 +0.3
499,657 - Echvi_0455 0.71 -0.1
499,660 - Echvi_0455 0.71 -0.5
499,660 - +1.8
499,692 + Echvi_0455 0.72 -0.6
499,712 + Echvi_0455 0.73 -0.5
499,712 + Echvi_0455 0.73 +0.7
499,712 + Echvi_0455 0.73 +0.8
499,713 - Echvi_0455 0.73 -1.1
499,745 + Echvi_0455 0.74 -0.3
499,831 + Echvi_0455 0.77 -0.4
499,832 - Echvi_0455 0.77 -0.5
499,864 - Echvi_0455 0.78 +2.6
499,882 + Echvi_0455 0.79 +1.1
499,882 + Echvi_0455 0.79 -0.4
499,882 + Echvi_0455 0.79 +0.8
499,883 - Echvi_0455 0.79 -0.0
499,901 + Echvi_0455 0.79 -0.6
499,901 + Echvi_0455 0.79 +0.8
500,008 + Echvi_0455 0.83 +0.6
500,008 + Echvi_0455 0.83 -1.4
500,008 + Echvi_0455 0.83 -0.2
500,008 + Echvi_0455 0.83 +0.0
500,008 + Echvi_0455 0.83 +1.0
500,008 + Echvi_0455 0.83 -2.2
500,008 + Echvi_0455 0.83 +0.8
500,009 - Echvi_0455 0.83 -0.4
500,009 - Echvi_0455 0.83 -0.9
500,009 - Echvi_0455 0.83 -1.8
500,026 - Echvi_0455 0.83 +0.1
500,026 - Echvi_0455 0.83 +1.4
500,027 + Echvi_0455 0.83 -0.5
500,027 + Echvi_0455 0.83 -1.5
500,028 - Echvi_0455 0.83 +0.8
500,028 - Echvi_0455 0.83 +0.7
500,051 - Echvi_0455 0.84 -0.2
500,051 - Echvi_0455 0.84 +1.9
500,074 + Echvi_0455 0.85 +0.3
500,074 + Echvi_0455 0.85 +0.6
500,074 + Echvi_0455 0.85 -0.5
500,075 - Echvi_0455 0.85 +0.5
500,075 - Echvi_0455 0.85 -0.6
500,085 - Echvi_0455 0.85 -0.5
500,109 - Echvi_0455 0.86 +0.6
500,144 + Echvi_0455 0.87 -1.5
500,158 - Echvi_0455 0.88 +1.4
500,163 - Echvi_0455 0.88 +1.0
500,163 - Echvi_0455 0.88 -0.8
500,227 + -0.3
500,273 + +0.4
500,273 + +0.5
500,273 + -0.1
500,273 + +0.1
500,274 - -1.2
500,274 - +0.9
500,274 - -0.1
500,283 + -0.4
500,283 + -0.3
500,284 - +0.8
500,284 - -1.2
500,286 - -0.0
500,286 - -0.9
500,294 + -0.1
500,294 + +1.4
500,295 - -1.1
500,295 - +1.3
500,295 - -0.8
500,313 + -0.2
500,318 + +0.1
500,337 + +0.6
500,337 + +1.0
500,338 - +2.4
500,338 - -2.5
500,339 + -0.4
500,340 - -0.1
500,340 - +0.1
500,340 - +0.9
500,342 + -0.4
500,361 + -0.3
500,369 - +0.0
500,384 + +1.7
500,384 + +0.1
500,385 - -1.0
500,419 + +0.3
500,419 + -0.2
500,419 + +0.6
500,429 + +0.0
500,501 + -2.0
500,502 - -1.8
500,504 - -1.6
500,518 + -0.7
500,519 - +0.8
500,519 - -0.4
500,522 - -1.4
500,522 - -0.5
500,522 - -0.8
500,522 - +1.5
500,527 - +0.8
500,527 - -0.7
500,540 + -1.4
500,540 + +0.0
500,540 + -0.5
500,540 + +0.3
500,586 + -0.7
500,633 + Echvi_0456 0.13 -0.6
500,669 + Echvi_0456 0.24 -1.3
500,706 + Echvi_0456 0.34 -0.2
500,779 + Echvi_0456 0.55 +1.1
500,779 + Echvi_0456 0.55 -0.6
500,780 - Echvi_0456 0.55 -0.1
500,811 + Echvi_0456 0.64 -1.2
500,817 - Echvi_0456 0.66 -0.4
500,858 + -0.1
500,859 - -0.7
500,859 - -0.8
500,880 + -0.9
500,975 + Echvi_0457 0.13 -0.0
500,976 - Echvi_0457 0.13 -0.1
500,998 - Echvi_0457 0.15 +0.0
500,998 - Echvi_0457 0.15 +1.7
501,001 + Echvi_0457 0.15 -1.3
501,001 + Echvi_0457 0.15 +0.7
501,001 + Echvi_0457 0.15 +0.9
501,002 - Echvi_0457 0.15 +0.1
501,005 + Echvi_0457 0.15 +0.4
501,006 - Echvi_0457 0.16 +0.5
501,025 + Echvi_0457 0.17 +0.5
501,025 + Echvi_0457 0.17 -0.7
501,025 + Echvi_0457 0.17 +1.3
501,029 - Echvi_0457 0.18 -0.5
501,059 - Echvi_0457 0.21 -0.1
501,082 + Echvi_0457 0.23 -0.1
501,124 + Echvi_0457 0.27 -0.3
501,124 + Echvi_0457 0.27 +0.0
501,125 - Echvi_0457 0.27 -1.0
501,125 - Echvi_0457 0.27 +0.2
501,125 - Echvi_0457 0.27 +0.5
501,135 + Echvi_0457 0.28 -1.4
501,154 + Echvi_0457 0.30 +0.3
501,166 - Echvi_0457 0.31 -1.1
501,172 - Echvi_0457 0.31 +0.2
501,292 + Echvi_0457 0.43 -0.2
501,292 + Echvi_0457 0.43 +0.4
501,292 + Echvi_0457 0.43 +0.2
501,292 + Echvi_0457 0.43 -1.5
501,293 - Echvi_0457 0.43 +0.2
501,373 + Echvi_0457 0.50 -0.3
501,379 - Echvi_0457 0.51 -0.0
501,499 - Echvi_0457 0.62 +0.2
501,580 - Echvi_0457 0.70 -0.2
501,580 - Echvi_0457 0.70 +1.4
501,581 + Echvi_0457 0.70 +1.6
501,591 + Echvi_0457 0.71 +0.2
501,609 + Echvi_0457 0.73 +0.3
501,609 + Echvi_0457 0.73 -0.9
501,646 - Echvi_0457 0.76 -0.2
501,652 + Echvi_0457 0.77 +0.3
501,653 - Echvi_0457 0.77 +0.4
501,676 - Echvi_0457 0.79 +0.1
501,735 + Echvi_0457 0.85 +1.4
501,736 - Echvi_0457 0.85 -1.0
501,736 - Echvi_0457 0.85 -0.9
501,736 - Echvi_0457 0.85 +0.6
501,744 + Echvi_0457 0.85 +0.2
501,744 + Echvi_0457 0.85 +0.2
501,744 + Echvi_0457 0.85 +0.3
501,745 - Echvi_0457 0.86 -0.1
501,757 + Echvi_0457 0.87 -1.5
501,853 - +1.3
501,877 - -0.8
501,893 - -1.7
501,901 - -0.4
501,924 - -2.5

Or see this region's nucleotide sequence