Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0437

Experiment: m.b. Cisplatin 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0435 and Echvi_0436 overlap by 11 nucleotidesEchvi_0436 and Echvi_0437 are separated by 101 nucleotidesEchvi_0437 and Echvi_0438 are separated by 33 nucleotidesEchvi_0438 and Echvi_0439 overlap by 61 nucleotidesEchvi_0439 and Echvi_0440 are separated by 212 nucleotides Echvi_0435: Echvi_0435 - Relaxase/Mobilisation nuclease domain., at 475,579 to 476,757 _0435 Echvi_0436: Echvi_0436 - Bacterial mobilisation protein (MobC)., at 476,747 to 477,091 _0436 Echvi_0437: Echvi_0437 - DNA primase (bacterial type), at 477,193 to 478,056 _0437 Echvi_0438: Echvi_0438 - hypothetical protein, at 478,090 to 478,263 _0438 Echvi_0439: Echvi_0439 - hypothetical protein, at 478,203 to 478,484 _0439 Echvi_0440: Echvi_0440 - DNA repair proteins, at 478,697 to 479,167 _0440 Position (kb) 477 478 479Strain fitness (log2 ratio) -2 -1 0 1 2at 476.201 kb on - strand, within Echvi_0435at 476.201 kb on - strand, within Echvi_0435at 476.210 kb on - strand, within Echvi_0435at 476.266 kb on - strand, within Echvi_0435at 476.318 kb on + strand, within Echvi_0435at 476.318 kb on + strand, within Echvi_0435at 476.319 kb on - strand, within Echvi_0435at 476.492 kb on + strand, within Echvi_0435at 476.492 kb on + strand, within Echvi_0435at 476.552 kb on - strand, within Echvi_0435at 476.556 kb on + strand, within Echvi_0435at 476.564 kb on + strand, within Echvi_0435at 476.565 kb on - strand, within Echvi_0435at 476.568 kb on + strand, within Echvi_0435at 476.593 kb on - strand, within Echvi_0435at 476.593 kb on - strand, within Echvi_0435at 476.624 kb on - strand, within Echvi_0435at 476.624 kb on - strand, within Echvi_0435at 476.624 kb on - strand, within Echvi_0435at 476.701 kb on - strandat 476.707 kb on - strandat 476.707 kb on - strandat 476.722 kb on + strandat 476.723 kb on - strandat 476.724 kb on + strandat 476.763 kb on - strandat 476.768 kb on + strandat 476.768 kb on + strandat 476.875 kb on + strand, within Echvi_0436at 476.898 kb on + strand, within Echvi_0436at 476.898 kb on + strand, within Echvi_0436at 476.898 kb on + strand, within Echvi_0436at 477.051 kb on - strand, within Echvi_0436at 477.181 kb on + strandat 477.183 kb on + strandat 477.195 kb on - strandat 477.246 kb on + strandat 477.248 kb on + strandat 477.294 kb on + strand, within Echvi_0437at 477.327 kb on + strand, within Echvi_0437at 477.327 kb on + strand, within Echvi_0437at 477.350 kb on - strand, within Echvi_0437at 477.365 kb on - strand, within Echvi_0437at 477.368 kb on - strand, within Echvi_0437at 477.452 kb on + strand, within Echvi_0437at 477.452 kb on + strand, within Echvi_0437at 477.459 kb on + strand, within Echvi_0437at 477.459 kb on + strand, within Echvi_0437at 477.459 kb on + strand, within Echvi_0437at 477.460 kb on - strand, within Echvi_0437at 477.486 kb on + strand, within Echvi_0437at 477.486 kb on + strand, within Echvi_0437at 477.486 kb on + strand, within Echvi_0437at 477.487 kb on - strand, within Echvi_0437at 477.493 kb on + strand, within Echvi_0437at 477.515 kb on + strand, within Echvi_0437at 477.515 kb on + strand, within Echvi_0437at 477.516 kb on - strand, within Echvi_0437at 477.548 kb on + strand, within Echvi_0437at 477.549 kb on + strand, within Echvi_0437at 477.620 kb on + strand, within Echvi_0437at 477.623 kb on + strand, within Echvi_0437at 477.623 kb on + strand, within Echvi_0437at 477.623 kb on + strand, within Echvi_0437at 477.624 kb on - strand, within Echvi_0437at 477.681 kb on - strand, within Echvi_0437at 477.727 kb on - strand, within Echvi_0437at 477.727 kb on - strand, within Echvi_0437at 477.806 kb on + strand, within Echvi_0437at 477.806 kb on + strand, within Echvi_0437at 477.876 kb on - strand, within Echvi_0437at 477.901 kb on + strand, within Echvi_0437at 477.901 kb on + strand, within Echvi_0437at 478.059 kb on + strandat 478.060 kb on - strandat 478.095 kb on + strandat 478.096 kb on - strandat 478.099 kb on - strandat 478.132 kb on - strand, within Echvi_0438at 478.163 kb on + strand, within Echvi_0438at 478.164 kb on - strand, within Echvi_0438at 478.172 kb on + strand, within Echvi_0438at 478.172 kb on + strand, within Echvi_0438at 478.523 kb on + strandat 478.523 kb on + strandat 478.573 kb on + strandat 478.648 kb on + strandat 478.648 kb on + strandat 478.720 kb on - strandat 478.751 kb on - strand, within Echvi_0440at 478.784 kb on + strand, within Echvi_0440at 478.784 kb on + strand, within Echvi_0440

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml
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476,201 - Echvi_0435 0.53 -0.6
476,201 - Echvi_0435 0.53 +0.2
476,210 - Echvi_0435 0.54 +0.3
476,266 - Echvi_0435 0.58 -0.6
476,318 + Echvi_0435 0.63 -0.2
476,318 + Echvi_0435 0.63 +0.8
476,319 - Echvi_0435 0.63 +0.7
476,492 + Echvi_0435 0.77 -0.2
476,492 + Echvi_0435 0.77 +0.6
476,552 - Echvi_0435 0.83 -0.0
476,556 + Echvi_0435 0.83 +0.0
476,564 + Echvi_0435 0.84 +0.6
476,565 - Echvi_0435 0.84 +0.3
476,568 + Echvi_0435 0.84 +0.3
476,593 - Echvi_0435 0.86 -0.2
476,593 - Echvi_0435 0.86 -0.3
476,624 - Echvi_0435 0.89 -0.2
476,624 - Echvi_0435 0.89 -0.3
476,624 - Echvi_0435 0.89 -0.8
476,701 - -0.2
476,707 - -0.5
476,707 - +0.4
476,722 + +0.1
476,723 - +1.3
476,724 + -0.9
476,763 - +0.1
476,768 + +0.4
476,768 + -2.1
476,875 + Echvi_0436 0.37 +0.4
476,898 + Echvi_0436 0.44 +1.1
476,898 + Echvi_0436 0.44 +0.0
476,898 + Echvi_0436 0.44 -0.2
477,051 - Echvi_0436 0.88 -1.0
477,181 + +1.9
477,183 + -0.0
477,195 - -0.8
477,246 + +0.1
477,248 + +0.1
477,294 + Echvi_0437 0.12 +0.3
477,327 + Echvi_0437 0.16 -0.7
477,327 + Echvi_0437 0.16 -0.6
477,350 - Echvi_0437 0.18 -0.2
477,365 - Echvi_0437 0.20 -0.5
477,368 - Echvi_0437 0.20 -2.5
477,452 + Echvi_0437 0.30 -1.2
477,452 + Echvi_0437 0.30 -0.1
477,459 + Echvi_0437 0.31 +0.3
477,459 + Echvi_0437 0.31 -1.3
477,459 + Echvi_0437 0.31 -0.1
477,460 - Echvi_0437 0.31 -1.3
477,486 + Echvi_0437 0.34 -0.3
477,486 + Echvi_0437 0.34 -1.6
477,486 + Echvi_0437 0.34 -2.3
477,487 - Echvi_0437 0.34 -1.3
477,493 + Echvi_0437 0.35 +0.1
477,515 + Echvi_0437 0.37 -0.8
477,515 + Echvi_0437 0.37 +0.1
477,516 - Echvi_0437 0.37 -0.5
477,548 + Echvi_0437 0.41 -1.1
477,549 + Echvi_0437 0.41 -0.5
477,620 + Echvi_0437 0.49 +0.2
477,623 + Echvi_0437 0.50 +0.8
477,623 + Echvi_0437 0.50 -0.3
477,623 + Echvi_0437 0.50 -0.3
477,624 - Echvi_0437 0.50 +0.1
477,681 - Echvi_0437 0.56 -0.0
477,727 - Echvi_0437 0.62 +0.6
477,727 - Echvi_0437 0.62 -1.3
477,806 + Echvi_0437 0.71 -0.2
477,806 + Echvi_0437 0.71 +0.2
477,876 - Echvi_0437 0.79 -1.6
477,901 + Echvi_0437 0.82 +0.3
477,901 + Echvi_0437 0.82 +0.6
478,059 + -0.1
478,060 - -0.6
478,095 + +1.3
478,096 - -0.6
478,099 - -1.7
478,132 - Echvi_0438 0.24 -1.1
478,163 + Echvi_0438 0.42 +0.4
478,164 - Echvi_0438 0.43 -0.4
478,172 + Echvi_0438 0.47 +0.4
478,172 + Echvi_0438 0.47 +0.7
478,523 + +0.7
478,523 + +0.0
478,573 + +0.6
478,648 + -0.9
478,648 + -1.1
478,720 - -0.0
478,751 - Echvi_0440 0.11 -2.0
478,784 + Echvi_0440 0.18 +0.1
478,784 + Echvi_0440 0.18 -0.7

Or see this region's nucleotide sequence