Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0298

Experiment: m.b. Cisplatin 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0297 and Echvi_0298 are separated by 249 nucleotidesEchvi_0298 and Echvi_0299 overlap by 4 nucleotidesEchvi_0299 and Echvi_0300 overlap by 4 nucleotides Echvi_0297: Echvi_0297 - DNA polymerase III, beta subunit, at 307,279 to 308,403 _0297 Echvi_0298: Echvi_0298 - gliding-associated putative ABC transporter substrate-binding component GldG, at 308,653 to 310,368 _0298 Echvi_0299: Echvi_0299 - gliding motility-associated ABC transporter permease protein GldF, at 310,365 to 311,087 _0299 Echvi_0300: Echvi_0300 - gliding motility-associated ABC transporter ATP-binding subunit GldA, at 311,084 to 312,001 _0300 Position (kb) 308 309 310 311Strain fitness (log2 ratio) -1 0 1 2 3at 308.452 kb on - strandat 308.452 kb on - strandat 308.452 kb on - strandat 308.452 kb on - strandat 308.499 kb on - strandat 308.610 kb on + strandat 308.734 kb on + strandat 308.736 kb on + strandat 308.736 kb on + strandat 308.737 kb on - strandat 308.846 kb on + strand, within Echvi_0298at 308.846 kb on + strand, within Echvi_0298at 308.846 kb on + strand, within Echvi_0298at 308.847 kb on - strand, within Echvi_0298at 308.847 kb on - strand, within Echvi_0298at 308.851 kb on + strand, within Echvi_0298at 308.852 kb on - strand, within Echvi_0298at 308.852 kb on - strand, within Echvi_0298at 308.856 kb on + strand, within Echvi_0298at 309.019 kb on + strand, within Echvi_0298at 309.046 kb on - strand, within Echvi_0298at 309.230 kb on - strand, within Echvi_0298at 309.247 kb on + strand, within Echvi_0298at 309.247 kb on + strand, within Echvi_0298at 309.247 kb on + strand, within Echvi_0298at 309.248 kb on - strand, within Echvi_0298at 309.248 kb on - strand, within Echvi_0298at 309.317 kb on + strand, within Echvi_0298at 309.317 kb on + strand, within Echvi_0298at 309.318 kb on - strand, within Echvi_0298at 309.384 kb on - strand, within Echvi_0298at 309.415 kb on - strand, within Echvi_0298at 309.431 kb on + strand, within Echvi_0298at 309.431 kb on + strand, within Echvi_0298at 309.432 kb on - strand, within Echvi_0298at 309.552 kb on + strand, within Echvi_0298at 309.552 kb on + strand, within Echvi_0298at 309.558 kb on - strand, within Echvi_0298at 309.558 kb on - strand, within Echvi_0298at 309.558 kb on - strand, within Echvi_0298at 309.572 kb on + strand, within Echvi_0298at 309.573 kb on - strand, within Echvi_0298at 309.574 kb on + strand, within Echvi_0298at 309.574 kb on + strand, within Echvi_0298at 309.574 kb on + strand, within Echvi_0298at 309.574 kb on + strand, within Echvi_0298at 309.575 kb on - strand, within Echvi_0298at 309.674 kb on + strand, within Echvi_0298at 309.684 kb on - strand, within Echvi_0298at 309.795 kb on + strand, within Echvi_0298at 309.796 kb on - strand, within Echvi_0298at 309.796 kb on - strand, within Echvi_0298at 309.809 kb on + strand, within Echvi_0298at 309.809 kb on + strand, within Echvi_0298at 309.810 kb on - strand, within Echvi_0298at 309.810 kb on - strand, within Echvi_0298at 309.838 kb on + strand, within Echvi_0298at 309.839 kb on - strand, within Echvi_0298at 309.839 kb on - strand, within Echvi_0298at 309.839 kb on - strand, within Echvi_0298at 309.928 kb on - strand, within Echvi_0298at 309.972 kb on + strand, within Echvi_0298at 309.998 kb on + strand, within Echvi_0298at 309.998 kb on + strand, within Echvi_0298at 310.005 kb on + strand, within Echvi_0298at 310.005 kb on + strand, within Echvi_0298at 310.005 kb on + strand, within Echvi_0298at 310.005 kb on + strand, within Echvi_0298at 310.005 kb on + strand, within Echvi_0298at 310.005 kb on + strand, within Echvi_0298at 310.006 kb on - strand, within Echvi_0298at 310.006 kb on - strand, within Echvi_0298at 310.006 kb on - strand, within Echvi_0298at 310.006 kb on - strand, within Echvi_0298at 310.006 kb on - strand, within Echvi_0298at 310.007 kb on + strand, within Echvi_0298at 310.007 kb on + strand, within Echvi_0298at 310.007 kb on + strand, within Echvi_0298at 310.007 kb on + strand, within Echvi_0298at 310.007 kb on + strand, within Echvi_0298at 310.007 kb on + strand, within Echvi_0298at 310.007 kb on + strand, within Echvi_0298at 310.007 kb on + strand, within Echvi_0298at 310.007 kb on + strand, within Echvi_0298at 310.008 kb on - strand, within Echvi_0298at 310.008 kb on - strand, within Echvi_0298at 310.008 kb on - strand, within Echvi_0298at 310.008 kb on - strand, within Echvi_0298at 310.008 kb on - strand, within Echvi_0298at 310.008 kb on - strand, within Echvi_0298at 310.008 kb on - strand, within Echvi_0298at 310.008 kb on - strand, within Echvi_0298at 310.026 kb on + strand, within Echvi_0298at 310.033 kb on + strand, within Echvi_0298at 310.052 kb on + strand, within Echvi_0298at 310.079 kb on + strand, within Echvi_0298at 310.080 kb on - strand, within Echvi_0298at 310.207 kb on - strandat 310.207 kb on - strandat 310.222 kb on - strandat 310.222 kb on - strandat 310.383 kb on + strandat 310.420 kb on - strandat 310.462 kb on - strand, within Echvi_0299at 310.472 kb on - strand, within Echvi_0299at 310.514 kb on + strand, within Echvi_0299at 310.514 kb on + strand, within Echvi_0299at 310.515 kb on - strand, within Echvi_0299at 310.527 kb on + strand, within Echvi_0299at 310.527 kb on + strand, within Echvi_0299at 310.527 kb on + strand, within Echvi_0299at 310.528 kb on - strand, within Echvi_0299at 310.599 kb on - strand, within Echvi_0299at 310.654 kb on - strand, within Echvi_0299at 310.654 kb on - strand, within Echvi_0299at 310.695 kb on - strand, within Echvi_0299at 310.700 kb on + strand, within Echvi_0299at 310.700 kb on + strand, within Echvi_0299at 310.738 kb on + strand, within Echvi_0299at 310.739 kb on - strand, within Echvi_0299at 310.739 kb on - strand, within Echvi_0299at 310.739 kb on - strand, within Echvi_0299at 310.739 kb on - strand, within Echvi_0299at 310.744 kb on - strand, within Echvi_0299at 310.792 kb on + strand, within Echvi_0299at 310.792 kb on + strand, within Echvi_0299at 310.803 kb on + strand, within Echvi_0299at 310.803 kb on + strand, within Echvi_0299at 310.803 kb on + strand, within Echvi_0299at 310.803 kb on + strand, within Echvi_0299at 310.804 kb on - strand, within Echvi_0299at 310.821 kb on + strand, within Echvi_0299at 310.901 kb on + strand, within Echvi_0299at 310.901 kb on + strand, within Echvi_0299at 310.911 kb on + strand, within Echvi_0299at 310.911 kb on + strand, within Echvi_0299at 310.911 kb on + strand, within Echvi_0299at 310.911 kb on + strand, within Echvi_0299at 310.911 kb on + strand, within Echvi_0299at 310.912 kb on - strand, within Echvi_0299at 310.912 kb on - strand, within Echvi_0299at 310.912 kb on - strand, within Echvi_0299at 310.912 kb on - strand, within Echvi_0299at 310.912 kb on - strand, within Echvi_0299at 310.912 kb on - strand, within Echvi_0299at 310.912 kb on - strand, within Echvi_0299at 310.912 kb on - strand, within Echvi_0299at 310.912 kb on - strand, within Echvi_0299at 310.915 kb on + strand, within Echvi_0299at 310.915 kb on + strand, within Echvi_0299at 310.916 kb on - strand, within Echvi_0299at 310.916 kb on - strand, within Echvi_0299at 310.922 kb on + strand, within Echvi_0299at 310.922 kb on + strand, within Echvi_0299at 310.922 kb on + strand, within Echvi_0299at 310.922 kb on + strand, within Echvi_0299at 310.922 kb on + strand, within Echvi_0299at 310.922 kb on + strand, within Echvi_0299at 310.924 kb on + strand, within Echvi_0299at 310.958 kb on - strand, within Echvi_0299at 311.033 kb on - strandat 311.071 kb on + strandat 311.076 kb on + strandat 311.077 kb on - strandat 311.077 kb on - strandat 311.102 kb on + strandat 311.103 kb on - strandat 311.114 kb on + strandat 311.233 kb on - strand, within Echvi_0300at 311.233 kb on - strand, within Echvi_0300at 311.246 kb on + strand, within Echvi_0300at 311.246 kb on + strand, within Echvi_0300at 311.247 kb on - strand, within Echvi_0300at 311.247 kb on - strand, within Echvi_0300at 311.316 kb on + strand, within Echvi_0300at 311.317 kb on - strand, within Echvi_0300at 311.345 kb on + strand, within Echvi_0300at 311.345 kb on + strand, within Echvi_0300at 311.346 kb on - strand, within Echvi_0300

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml
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308,452 - +0.7
308,452 - -0.3
308,452 - -0.3
308,452 - +0.4
308,499 - +0.5
308,610 + +0.8
308,734 + +1.8
308,736 + +2.7
308,736 + +2.1
308,737 - -0.9
308,846 + Echvi_0298 0.11 +2.3
308,846 + Echvi_0298 0.11 +2.3
308,846 + Echvi_0298 0.11 +2.2
308,847 - Echvi_0298 0.11 -0.3
308,847 - Echvi_0298 0.11 -0.5
308,851 + Echvi_0298 0.12 +1.4
308,852 - Echvi_0298 0.12 -1.4
308,852 - Echvi_0298 0.12 -0.7
308,856 + Echvi_0298 0.12 +2.2
309,019 + Echvi_0298 0.21 +2.0
309,046 - Echvi_0298 0.23 +0.7
309,230 - Echvi_0298 0.34 +0.5
309,247 + Echvi_0298 0.35 +1.9
309,247 + Echvi_0298 0.35 +2.2
309,247 + Echvi_0298 0.35 +2.1
309,248 - Echvi_0298 0.35 +0.7
309,248 - Echvi_0298 0.35 +1.1
309,317 + Echvi_0298 0.39 +1.8
309,317 + Echvi_0298 0.39 +3.0
309,318 - Echvi_0298 0.39 +1.0
309,384 - Echvi_0298 0.43 +1.0
309,415 - Echvi_0298 0.44 +1.3
309,431 + Echvi_0298 0.45 +1.9
309,431 + Echvi_0298 0.45 +1.5
309,432 - Echvi_0298 0.45 +0.9
309,552 + Echvi_0298 0.52 +1.8
309,552 + Echvi_0298 0.52 +1.7
309,558 - Echvi_0298 0.53 +0.8
309,558 - Echvi_0298 0.53 +1.4
309,558 - Echvi_0298 0.53 +0.7
309,572 + Echvi_0298 0.54 +1.6
309,573 - Echvi_0298 0.54 +0.5
309,574 + Echvi_0298 0.54 +1.4
309,574 + Echvi_0298 0.54 +1.5
309,574 + Echvi_0298 0.54 +1.2
309,574 + Echvi_0298 0.54 +2.4
309,575 - Echvi_0298 0.54 +1.4
309,674 + Echvi_0298 0.59 +1.4
309,684 - Echvi_0298 0.60 +0.8
309,795 + Echvi_0298 0.67 +2.0
309,796 - Echvi_0298 0.67 +1.9
309,796 - Echvi_0298 0.67 +0.7
309,809 + Echvi_0298 0.67 +1.4
309,809 + Echvi_0298 0.67 +2.0
309,810 - Echvi_0298 0.67 +0.7
309,810 - Echvi_0298 0.67 +0.7
309,838 + Echvi_0298 0.69 +1.7
309,839 - Echvi_0298 0.69 +0.8
309,839 - Echvi_0298 0.69 +1.0
309,839 - Echvi_0298 0.69 +1.2
309,928 - Echvi_0298 0.74 +1.0
309,972 + Echvi_0298 0.77 +1.7
309,998 + Echvi_0298 0.78 +2.2
309,998 + Echvi_0298 0.78 +2.1
310,005 + Echvi_0298 0.79 +2.2
310,005 + Echvi_0298 0.79 +1.9
310,005 + Echvi_0298 0.79 +1.9
310,005 + Echvi_0298 0.79 +2.8
310,005 + Echvi_0298 0.79 +1.4
310,005 + Echvi_0298 0.79 +2.0
310,006 - Echvi_0298 0.79 +1.0
310,006 - Echvi_0298 0.79 +1.0
310,006 - Echvi_0298 0.79 +1.0
310,006 - Echvi_0298 0.79 +0.9
310,006 - Echvi_0298 0.79 +0.6
310,007 + Echvi_0298 0.79 +2.4
310,007 + Echvi_0298 0.79 +2.1
310,007 + Echvi_0298 0.79 +2.2
310,007 + Echvi_0298 0.79 +1.8
310,007 + Echvi_0298 0.79 +2.1
310,007 + Echvi_0298 0.79 +2.4
310,007 + Echvi_0298 0.79 +1.0
310,007 + Echvi_0298 0.79 +1.8
310,007 + Echvi_0298 0.79 +2.1
310,008 - Echvi_0298 0.79 +1.4
310,008 - Echvi_0298 0.79 +0.5
310,008 - Echvi_0298 0.79 +1.4
310,008 - Echvi_0298 0.79 +1.2
310,008 - Echvi_0298 0.79 +0.7
310,008 - Echvi_0298 0.79 +1.2
310,008 - Echvi_0298 0.79 +1.9
310,008 - Echvi_0298 0.79 +1.0
310,026 + Echvi_0298 0.80 +3.0
310,033 + Echvi_0298 0.80 +0.9
310,052 + Echvi_0298 0.82 +1.9
310,079 + Echvi_0298 0.83 +1.9
310,080 - Echvi_0298 0.83 -0.3
310,207 - +1.2
310,207 - +0.7
310,222 - +1.4
310,222 - +1.6
310,383 + +1.7
310,420 - +0.0
310,462 - Echvi_0299 0.13 +1.8
310,472 - Echvi_0299 0.15 +1.3
310,514 + Echvi_0299 0.21 +3.0
310,514 + Echvi_0299 0.21 +2.0
310,515 - Echvi_0299 0.21 +1.4
310,527 + Echvi_0299 0.22 +2.3
310,527 + Echvi_0299 0.22 +1.8
310,527 + Echvi_0299 0.22 +1.6
310,528 - Echvi_0299 0.23 +1.1
310,599 - Echvi_0299 0.32 +1.3
310,654 - Echvi_0299 0.40 +1.5
310,654 - Echvi_0299 0.40 +1.8
310,695 - Echvi_0299 0.46 +1.7
310,700 + Echvi_0299 0.46 +1.7
310,700 + Echvi_0299 0.46 +2.5
310,738 + Echvi_0299 0.52 +2.5
310,739 - Echvi_0299 0.52 +1.1
310,739 - Echvi_0299 0.52 +1.3
310,739 - Echvi_0299 0.52 +1.1
310,739 - Echvi_0299 0.52 +1.0
310,744 - Echvi_0299 0.52 +1.9
310,792 + Echvi_0299 0.59 +1.2
310,792 + Echvi_0299 0.59 +1.4
310,803 + Echvi_0299 0.61 +1.7
310,803 + Echvi_0299 0.61 +1.7
310,803 + Echvi_0299 0.61 +1.5
310,803 + Echvi_0299 0.61 +1.8
310,804 - Echvi_0299 0.61 +1.4
310,821 + Echvi_0299 0.63 +2.9
310,901 + Echvi_0299 0.74 +1.3
310,901 + Echvi_0299 0.74 +3.4
310,911 + Echvi_0299 0.76 +2.0
310,911 + Echvi_0299 0.76 +2.2
310,911 + Echvi_0299 0.76 +1.6
310,911 + Echvi_0299 0.76 +0.9
310,911 + Echvi_0299 0.76 +2.1
310,912 - Echvi_0299 0.76 +1.4
310,912 - Echvi_0299 0.76 +2.4
310,912 - Echvi_0299 0.76 +1.5
310,912 - Echvi_0299 0.76 +1.5
310,912 - Echvi_0299 0.76 +1.5
310,912 - Echvi_0299 0.76 +0.3
310,912 - Echvi_0299 0.76 +1.9
310,912 - Echvi_0299 0.76 +2.0
310,912 - Echvi_0299 0.76 +1.6
310,915 + Echvi_0299 0.76 +2.1
310,915 + Echvi_0299 0.76 +2.1
310,916 - Echvi_0299 0.76 +1.1
310,916 - Echvi_0299 0.76 +1.1
310,922 + Echvi_0299 0.77 +1.8
310,922 + Echvi_0299 0.77 +2.7
310,922 + Echvi_0299 0.77 +2.1
310,922 + Echvi_0299 0.77 +1.7
310,922 + Echvi_0299 0.77 +2.1
310,922 + Echvi_0299 0.77 +2.2
310,924 + Echvi_0299 0.77 +2.1
310,958 - Echvi_0299 0.82 +2.0
311,033 - +1.9
311,071 + +1.7
311,076 + +1.9
311,077 - +0.5
311,077 - +0.4
311,102 + +2.0
311,103 - +0.8
311,114 + +2.2
311,233 - Echvi_0300 0.16 +1.4
311,233 - Echvi_0300 0.16 +1.2
311,246 + Echvi_0300 0.18 +2.4
311,246 + Echvi_0300 0.18 +2.3
311,247 - Echvi_0300 0.18 +1.4
311,247 - Echvi_0300 0.18 +0.6
311,316 + Echvi_0300 0.25 +1.7
311,317 - Echvi_0300 0.25 +1.4
311,345 + Echvi_0300 0.28 +2.1
311,345 + Echvi_0300 0.28 +1.8
311,346 - Echvi_0300 0.29 +0.7

Or see this region's nucleotide sequence