Experiment: MS_media no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_4527 and EX28DRAFT_4528 are separated by 114 nucleotides EX28DRAFT_4528 and EX28DRAFT_4529 overlap by 1 nucleotides EX28DRAFT_4529 and EX28DRAFT_4530 are separated by 180 nucleotides EX28DRAFT_4530 and EX28DRAFT_4531 are separated by 336 nucleotides
EX28DRAFT_4527: EX28DRAFT_4527 - DNA-directed RNA polymerase, beta' subunit, predominant form, at 8,239 to 12,462
_4527
EX28DRAFT_4528: EX28DRAFT_4528 - Phosphotransferase system cellobiose-specific component IIA, at 12,577 to 12,894
_4528
EX28DRAFT_4529: EX28DRAFT_4529 - Phosphotransferase system cellobiose-specific component IIB, at 12,894 to 13,202
_4529
EX28DRAFT_4530: EX28DRAFT_4530 - FOG: GGDEF domain, at 13,383 to 14,924
_4530
EX28DRAFT_4531: EX28DRAFT_4531 - thiazole biosynthesis protein ThiH, at 15,261 to 16,388
_4531
Position (kb) 13
14
15 Strain fitness (log2 ratio) -1
0
1
2 at 12.562 kb on + strand at 12.562 kb on + strand at 12.570 kb on + strand at 12.570 kb on + strand at 12.571 kb on - strand at 12.571 kb on - strand at 12.571 kb on - strand at 12.896 kb on - strand at 12.928 kb on - strand, within EX28DRAFT_4529 at 13.024 kb on + strand, within EX28DRAFT_4529 at 13.024 kb on + strand, within EX28DRAFT_4529 at 13.024 kb on + strand, within EX28DRAFT_4529 at 13.024 kb on + strand, within EX28DRAFT_4529 at 13.048 kb on - strand, within EX28DRAFT_4529 at 13.143 kb on - strand, within EX28DRAFT_4529 at 13.217 kb on + strand at 13.436 kb on - strand at 13.511 kb on + strand at 13.703 kb on + strand, within EX28DRAFT_4530 at 13.749 kb on - strand, within EX28DRAFT_4530 at 13.805 kb on + strand, within EX28DRAFT_4530 at 13.870 kb on + strand, within EX28DRAFT_4530 at 13.871 kb on - strand, within EX28DRAFT_4530 at 13.902 kb on - strand, within EX28DRAFT_4530 at 13.904 kb on + strand, within EX28DRAFT_4530 at 13.967 kb on + strand, within EX28DRAFT_4530 at 13.967 kb on + strand, within EX28DRAFT_4530 at 14.005 kb on + strand, within EX28DRAFT_4530 at 14.005 kb on + strand, within EX28DRAFT_4530 at 14.135 kb on + strand, within EX28DRAFT_4530 at 14.143 kb on + strand, within EX28DRAFT_4530 at 14.144 kb on - strand, within EX28DRAFT_4530 at 14.146 kb on + strand, within EX28DRAFT_4530 at 14.146 kb on + strand, within EX28DRAFT_4530 at 14.146 kb on + strand, within EX28DRAFT_4530 at 14.147 kb on - strand, within EX28DRAFT_4530 at 14.147 kb on - strand, within EX28DRAFT_4530 at 14.149 kb on + strand, within EX28DRAFT_4530 at 14.149 kb on + strand, within EX28DRAFT_4530 at 14.150 kb on - strand, within EX28DRAFT_4530 at 14.152 kb on + strand, within EX28DRAFT_4530 at 14.176 kb on + strand, within EX28DRAFT_4530 at 14.177 kb on - strand, within EX28DRAFT_4530 at 14.227 kb on + strand, within EX28DRAFT_4530 at 14.407 kb on + strand, within EX28DRAFT_4530 at 14.456 kb on + strand, within EX28DRAFT_4530 at 14.457 kb on - strand, within EX28DRAFT_4530 at 14.526 kb on - strand, within EX28DRAFT_4530 at 14.544 kb on + strand, within EX28DRAFT_4530 at 14.544 kb on + strand, within EX28DRAFT_4530 at 14.564 kb on - strand, within EX28DRAFT_4530 at 14.695 kb on + strand, within EX28DRAFT_4530 at 14.717 kb on + strand, within EX28DRAFT_4530 at 14.718 kb on - strand, within EX28DRAFT_4530 at 14.719 kb on + strand, within EX28DRAFT_4530 at 14.720 kb on - strand, within EX28DRAFT_4530 at 14.720 kb on - strand, within EX28DRAFT_4530 at 14.720 kb on - strand, within EX28DRAFT_4530 at 14.931 kb on + strand at 14.931 kb on + strand at 14.931 kb on + strand at 14.931 kb on + strand at 14.931 kb on + strand at 14.932 kb on - strand at 14.953 kb on - strand at 14.982 kb on + strand at 14.983 kb on - strand at 15.012 kb on - strand at 15.013 kb on + strand at 15.014 kb on - strand at 15.042 kb on + strand at 15.043 kb on - strand at 15.048 kb on - strand at 15.069 kb on + strand at 15.070 kb on - strand at 15.678 kb on - strand, within EX28DRAFT_4531 at 15.678 kb on - strand, within EX28DRAFT_4531 at 15.679 kb on + strand, within EX28DRAFT_4531 at 15.679 kb on + strand, within EX28DRAFT_4531 at 15.680 kb on - strand, within EX28DRAFT_4531 at 15.680 kb on - strand, within EX28DRAFT_4531 at 15.889 kb on + strand, within EX28DRAFT_4531 at 15.889 kb on + strand, within EX28DRAFT_4531 at 15.890 kb on - strand, within EX28DRAFT_4531 at 15.890 kb on - strand, within EX28DRAFT_4531
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media no stress control remove 12,562 + -0.8 12,562 + +0.0 12,570 + -0.1 12,570 + -0.6 12,571 - -0.1 12,571 - +0.1 12,571 - +0.1 12,896 - +0.1 12,928 - EX28DRAFT_4529 0.11 -0.2 13,024 + EX28DRAFT_4529 0.42 -0.2 13,024 + EX28DRAFT_4529 0.42 -0.3 13,024 + EX28DRAFT_4529 0.42 -0.2 13,024 + EX28DRAFT_4529 0.42 -0.3 13,048 - EX28DRAFT_4529 0.50 -0.1 13,143 - EX28DRAFT_4529 0.81 +0.3 13,217 + -0.2 13,436 - -0.4 13,511 + +0.2 13,703 + EX28DRAFT_4530 0.21 +1.1 13,749 - EX28DRAFT_4530 0.24 -0.4 13,805 + EX28DRAFT_4530 0.27 +0.3 13,870 + EX28DRAFT_4530 0.32 +0.3 13,871 - EX28DRAFT_4530 0.32 +0.0 13,902 - EX28DRAFT_4530 0.34 +0.5 13,904 + EX28DRAFT_4530 0.34 -0.4 13,967 + EX28DRAFT_4530 0.38 -0.0 13,967 + EX28DRAFT_4530 0.38 -0.1 14,005 + EX28DRAFT_4530 0.40 +1.0 14,005 + EX28DRAFT_4530 0.40 +0.1 14,135 + EX28DRAFT_4530 0.49 +0.3 14,143 + EX28DRAFT_4530 0.49 +0.2 14,144 - EX28DRAFT_4530 0.49 +0.2 14,146 + EX28DRAFT_4530 0.49 +0.2 14,146 + EX28DRAFT_4530 0.49 +0.7 14,146 + EX28DRAFT_4530 0.49 +0.8 14,147 - EX28DRAFT_4530 0.50 -0.1 14,147 - EX28DRAFT_4530 0.50 +0.4 14,149 + EX28DRAFT_4530 0.50 -0.1 14,149 + EX28DRAFT_4530 0.50 -0.1 14,150 - EX28DRAFT_4530 0.50 +0.9 14,152 + EX28DRAFT_4530 0.50 +0.1 14,176 + EX28DRAFT_4530 0.51 -0.0 14,177 - EX28DRAFT_4530 0.51 -0.9 14,227 + EX28DRAFT_4530 0.55 -0.5 14,407 + EX28DRAFT_4530 0.66 +1.1 14,456 + EX28DRAFT_4530 0.70 -0.2 14,457 - EX28DRAFT_4530 0.70 +1.2 14,526 - EX28DRAFT_4530 0.74 +0.1 14,544 + EX28DRAFT_4530 0.75 +0.1 14,544 + EX28DRAFT_4530 0.75 -0.2 14,564 - EX28DRAFT_4530 0.77 +0.5 14,695 + EX28DRAFT_4530 0.85 -0.2 14,717 + EX28DRAFT_4530 0.87 +0.0 14,718 - EX28DRAFT_4530 0.87 -0.4 14,719 + EX28DRAFT_4530 0.87 +0.4 14,720 - EX28DRAFT_4530 0.87 -0.1 14,720 - EX28DRAFT_4530 0.87 +0.2 14,720 - EX28DRAFT_4530 0.87 -0.5 14,931 + +0.1 14,931 + +0.0 14,931 + -0.2 14,931 + +0.9 14,931 + -0.8 14,932 - +2.6 14,953 - -0.3 14,982 + +1.6 14,983 - +0.2 15,012 - -0.5 15,013 + -0.3 15,014 - -0.6 15,042 + +0.0 15,043 - +1.8 15,048 - -0.8 15,069 + +0.1 15,070 - -0.6 15,678 - EX28DRAFT_4531 0.37 +0.3 15,678 - EX28DRAFT_4531 0.37 +0.6 15,679 + EX28DRAFT_4531 0.37 +0.2 15,679 + EX28DRAFT_4531 0.37 +0.2 15,680 - EX28DRAFT_4531 0.37 -0.6 15,680 - EX28DRAFT_4531 0.37 +0.0 15,889 + EX28DRAFT_4531 0.56 +0.2 15,889 + EX28DRAFT_4531 0.56 -0.1 15,890 - EX28DRAFT_4531 0.56 +0.3 15,890 - EX28DRAFT_4531 0.56 -0.2
Or see this region's nucleotide sequence