Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4488

Experiment: MS_media no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_4487 and EX28DRAFT_4488 are separated by 61 nucleotidesEX28DRAFT_4488 and EX28DRAFT_4489 overlap by 4 nucleotidesEX28DRAFT_4489 and EX28DRAFT_4490 are separated by 110 nucleotides EX28DRAFT_4487: EX28DRAFT_4487 - ATP-dependent DNA helicase RecQ, at 52,709 to 54,601 _4487 EX28DRAFT_4488: EX28DRAFT_4488 - The Resistance to Homoserine/Threonine (RhtB) Family protein, at 54,663 to 55,283 _4488 EX28DRAFT_4489: EX28DRAFT_4489 - The Resistance to Homoserine/Threonine (RhtB) Family protein, at 55,280 to 55,900 _4489 EX28DRAFT_4490: EX28DRAFT_4490 - Lysophospholipase, at 56,011 to 57,003 _4490 Position (kb) 54 55 56Strain fitness (log2 ratio) -3 -2 -1 0 1at 53.733 kb on - strand, within EX28DRAFT_4487at 53.999 kb on + strand, within EX28DRAFT_4487at 54.041 kb on + strand, within EX28DRAFT_4487at 54.072 kb on - strand, within EX28DRAFT_4487at 54.362 kb on + strand, within EX28DRAFT_4487at 54.363 kb on - strand, within EX28DRAFT_4487at 54.599 kb on + strandat 54.644 kb on - strandat 54.658 kb on + strandat 54.668 kb on - strandat 54.668 kb on - strandat 54.673 kb on + strandat 54.674 kb on - strandat 54.674 kb on - strandat 54.875 kb on + strand, within EX28DRAFT_4488at 54.876 kb on - strand, within EX28DRAFT_4488at 54.884 kb on + strand, within EX28DRAFT_4488at 54.903 kb on + strand, within EX28DRAFT_4488at 54.904 kb on - strand, within EX28DRAFT_4488at 55.010 kb on - strand, within EX28DRAFT_4488at 55.053 kb on + strand, within EX28DRAFT_4488at 55.053 kb on + strand, within EX28DRAFT_4488at 55.053 kb on + strand, within EX28DRAFT_4488at 55.053 kb on + strand, within EX28DRAFT_4488at 55.054 kb on - strand, within EX28DRAFT_4488at 55.155 kb on - strand, within EX28DRAFT_4488at 55.321 kb on + strandat 55.363 kb on + strand, within EX28DRAFT_4489at 55.461 kb on + strand, within EX28DRAFT_4489at 55.461 kb on + strand, within EX28DRAFT_4489at 55.461 kb on + strand, within EX28DRAFT_4489at 55.462 kb on - strand, within EX28DRAFT_4489at 55.462 kb on - strand, within EX28DRAFT_4489at 55.600 kb on + strand, within EX28DRAFT_4489at 55.600 kb on + strand, within EX28DRAFT_4489at 55.676 kb on - strand, within EX28DRAFT_4489at 55.676 kb on - strand, within EX28DRAFT_4489at 55.741 kb on + strand, within EX28DRAFT_4489at 55.741 kb on + strand, within EX28DRAFT_4489at 55.741 kb on + strand, within EX28DRAFT_4489at 55.742 kb on - strand, within EX28DRAFT_4489at 55.742 kb on - strand, within EX28DRAFT_4489at 55.742 kb on - strand, within EX28DRAFT_4489at 55.825 kb on + strand, within EX28DRAFT_4489at 55.825 kb on + strand, within EX28DRAFT_4489at 55.826 kb on - strand, within EX28DRAFT_4489at 55.826 kb on - strand, within EX28DRAFT_4489at 55.826 kb on - strand, within EX28DRAFT_4489at 55.829 kb on - strand, within EX28DRAFT_4489at 55.875 kb on + strandat 55.936 kb on + strandat 55.944 kb on + strandat 55.944 kb on + strandat 55.945 kb on - strandat 55.993 kb on + strandat 56.067 kb on + strandat 56.068 kb on - strandat 56.210 kb on - strand, within EX28DRAFT_4490at 56.214 kb on + strand, within EX28DRAFT_4490at 56.215 kb on - strand, within EX28DRAFT_4490

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media no stress control
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53,733 - EX28DRAFT_4487 0.54 +0.0
53,999 + EX28DRAFT_4487 0.68 -0.2
54,041 + EX28DRAFT_4487 0.70 +0.4
54,072 - EX28DRAFT_4487 0.72 +0.3
54,362 + EX28DRAFT_4487 0.87 +0.8
54,363 - EX28DRAFT_4487 0.87 +0.2
54,599 + +0.9
54,644 - -0.6
54,658 + -0.3
54,668 - +0.8
54,668 - -0.4
54,673 + -2.8
54,674 - +0.5
54,674 - -0.5
54,875 + EX28DRAFT_4488 0.34 +0.3
54,876 - EX28DRAFT_4488 0.34 +0.8
54,884 + EX28DRAFT_4488 0.36 +1.2
54,903 + EX28DRAFT_4488 0.39 +0.8
54,904 - EX28DRAFT_4488 0.39 +0.0
55,010 - EX28DRAFT_4488 0.56 +0.3
55,053 + EX28DRAFT_4488 0.63 +0.3
55,053 + EX28DRAFT_4488 0.63 -0.3
55,053 + EX28DRAFT_4488 0.63 +0.3
55,053 + EX28DRAFT_4488 0.63 +1.1
55,054 - EX28DRAFT_4488 0.63 +0.1
55,155 - EX28DRAFT_4488 0.79 -0.2
55,321 + -0.1
55,363 + EX28DRAFT_4489 0.13 -0.3
55,461 + EX28DRAFT_4489 0.29 -0.6
55,461 + EX28DRAFT_4489 0.29 -1.0
55,461 + EX28DRAFT_4489 0.29 +0.4
55,462 - EX28DRAFT_4489 0.29 +1.0
55,462 - EX28DRAFT_4489 0.29 +0.0
55,600 + EX28DRAFT_4489 0.52 +0.3
55,600 + EX28DRAFT_4489 0.52 +0.0
55,676 - EX28DRAFT_4489 0.64 +0.9
55,676 - EX28DRAFT_4489 0.64 -0.1
55,741 + EX28DRAFT_4489 0.74 -0.1
55,741 + EX28DRAFT_4489 0.74 -0.1
55,741 + EX28DRAFT_4489 0.74 -0.2
55,742 - EX28DRAFT_4489 0.74 +0.9
55,742 - EX28DRAFT_4489 0.74 +0.1
55,742 - EX28DRAFT_4489 0.74 +0.2
55,825 + EX28DRAFT_4489 0.88 +0.4
55,825 + EX28DRAFT_4489 0.88 +0.6
55,826 - EX28DRAFT_4489 0.88 -0.6
55,826 - EX28DRAFT_4489 0.88 -0.4
55,826 - EX28DRAFT_4489 0.88 +0.3
55,829 - EX28DRAFT_4489 0.88 +0.0
55,875 + +0.2
55,936 + +0.3
55,944 + -0.4
55,944 + +1.3
55,945 - +1.6
55,993 + +0.2
56,067 + +0.1
56,068 - +0.1
56,210 - EX28DRAFT_4490 0.20 +0.4
56,214 + EX28DRAFT_4490 0.20 -0.2
56,215 - EX28DRAFT_4490 0.21 -0.1

Or see this region's nucleotide sequence