Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4429

Experiment: MS_media no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_4428 and EX28DRAFT_4429 are separated by 346 nucleotidesEX28DRAFT_4429 and EX28DRAFT_4430 overlap by 56 nucleotides EX28DRAFT_4428: EX28DRAFT_4428 - tRNA (uracil(54)-C(5))-methyltransferase, at 94,865 to 95,977 _4428 EX28DRAFT_4429: EX28DRAFT_4429 - TonB-dependent vitamin B12 receptor, at 96,324 to 98,171 _4429 EX28DRAFT_4430: EX28DRAFT_4430 - glutamate racemase (EC 5.1.1.3), at 98,116 to 98,967 _4430 Position (kb) 96 97 98 99Strain fitness (log2 ratio) -1 0 1 2at 95.424 kb on + strand, within EX28DRAFT_4428at 95.620 kb on + strand, within EX28DRAFT_4428at 95.620 kb on + strand, within EX28DRAFT_4428at 95.621 kb on - strand, within EX28DRAFT_4428at 95.621 kb on - strand, within EX28DRAFT_4428at 95.621 kb on - strand, within EX28DRAFT_4428at 95.621 kb on - strand, within EX28DRAFT_4428at 95.905 kb on + strandat 95.905 kb on + strandat 95.947 kb on - strandat 95.947 kb on - strandat 95.994 kb on + strandat 96.002 kb on + strandat 96.015 kb on + strandat 96.053 kb on + strandat 96.053 kb on + strandat 96.053 kb on + strandat 96.054 kb on - strandat 96.071 kb on + strandat 96.071 kb on + strandat 96.071 kb on + strandat 96.072 kb on - strandat 96.072 kb on - strandat 96.072 kb on - strandat 96.080 kb on - strandat 96.080 kb on - strandat 96.086 kb on - strandat 96.086 kb on - strandat 96.086 kb on - strandat 96.132 kb on - strandat 96.181 kb on - strandat 96.181 kb on - strandat 96.212 kb on + strandat 96.212 kb on + strandat 96.212 kb on + strandat 96.212 kb on + strandat 96.213 kb on - strandat 96.213 kb on - strandat 96.213 kb on - strandat 96.213 kb on - strandat 96.213 kb on - strandat 96.213 kb on - strandat 96.213 kb on - strandat 96.213 kb on - strandat 96.213 kb on - strandat 96.214 kb on + strandat 96.214 kb on + strandat 96.214 kb on + strandat 96.214 kb on + strandat 96.215 kb on - strandat 96.215 kb on - strandat 96.216 kb on + strandat 96.217 kb on - strandat 96.217 kb on - strandat 96.224 kb on + strandat 96.276 kb on + strandat 96.303 kb on + strandat 96.303 kb on + strandat 96.303 kb on + strandat 96.303 kb on + strandat 96.304 kb on - strandat 96.304 kb on - strandat 96.304 kb on - strandat 96.304 kb on - strandat 96.304 kb on - strandat 96.305 kb on + strandat 96.305 kb on + strandat 96.306 kb on - strandat 96.306 kb on - strandat 96.515 kb on + strand, within EX28DRAFT_4429at 96.516 kb on - strand, within EX28DRAFT_4429at 96.582 kb on - strand, within EX28DRAFT_4429at 96.583 kb on + strand, within EX28DRAFT_4429at 96.583 kb on + strand, within EX28DRAFT_4429at 96.583 kb on + strand, within EX28DRAFT_4429at 96.584 kb on - strand, within EX28DRAFT_4429at 96.731 kb on - strand, within EX28DRAFT_4429at 96.732 kb on + strand, within EX28DRAFT_4429at 96.768 kb on - strand, within EX28DRAFT_4429at 96.768 kb on - strand, within EX28DRAFT_4429at 96.770 kb on + strand, within EX28DRAFT_4429at 96.835 kb on - strand, within EX28DRAFT_4429at 96.894 kb on + strand, within EX28DRAFT_4429at 96.894 kb on + strand, within EX28DRAFT_4429at 96.895 kb on - strand, within EX28DRAFT_4429at 96.978 kb on - strand, within EX28DRAFT_4429at 96.987 kb on + strand, within EX28DRAFT_4429at 97.066 kb on - strand, within EX28DRAFT_4429at 97.077 kb on + strand, within EX28DRAFT_4429at 97.078 kb on - strand, within EX28DRAFT_4429at 97.099 kb on + strand, within EX28DRAFT_4429at 97.100 kb on - strand, within EX28DRAFT_4429at 97.122 kb on + strand, within EX28DRAFT_4429at 97.122 kb on + strand, within EX28DRAFT_4429at 97.122 kb on + strand, within EX28DRAFT_4429at 97.123 kb on - strand, within EX28DRAFT_4429at 97.123 kb on - strand, within EX28DRAFT_4429at 97.124 kb on + strand, within EX28DRAFT_4429at 97.191 kb on + strand, within EX28DRAFT_4429at 97.191 kb on + strand, within EX28DRAFT_4429at 97.191 kb on + strand, within EX28DRAFT_4429at 97.192 kb on - strand, within EX28DRAFT_4429at 97.193 kb on + strand, within EX28DRAFT_4429at 97.209 kb on + strand, within EX28DRAFT_4429at 97.209 kb on + strand, within EX28DRAFT_4429at 97.209 kb on + strand, within EX28DRAFT_4429at 97.209 kb on + strand, within EX28DRAFT_4429at 97.210 kb on - strand, within EX28DRAFT_4429at 97.212 kb on - strand, within EX28DRAFT_4429at 97.216 kb on - strand, within EX28DRAFT_4429at 97.272 kb on + strand, within EX28DRAFT_4429at 97.273 kb on - strand, within EX28DRAFT_4429at 97.273 kb on - strand, within EX28DRAFT_4429at 97.273 kb on - strand, within EX28DRAFT_4429at 97.368 kb on + strand, within EX28DRAFT_4429at 97.369 kb on - strand, within EX28DRAFT_4429at 97.407 kb on + strand, within EX28DRAFT_4429at 97.551 kb on + strand, within EX28DRAFT_4429at 97.552 kb on - strand, within EX28DRAFT_4429at 97.552 kb on - strand, within EX28DRAFT_4429at 97.556 kb on + strand, within EX28DRAFT_4429at 97.563 kb on + strand, within EX28DRAFT_4429at 97.566 kb on - strand, within EX28DRAFT_4429at 97.591 kb on - strand, within EX28DRAFT_4429at 97.591 kb on - strand, within EX28DRAFT_4429at 97.591 kb on - strand, within EX28DRAFT_4429at 97.600 kb on - strand, within EX28DRAFT_4429at 97.697 kb on + strand, within EX28DRAFT_4429at 97.730 kb on + strand, within EX28DRAFT_4429at 97.731 kb on - strand, within EX28DRAFT_4429at 97.744 kb on - strand, within EX28DRAFT_4429at 97.746 kb on + strand, within EX28DRAFT_4429at 97.770 kb on - strand, within EX28DRAFT_4429at 97.818 kb on - strand, within EX28DRAFT_4429at 97.822 kb on + strand, within EX28DRAFT_4429at 97.833 kb on + strand, within EX28DRAFT_4429at 97.833 kb on + strand, within EX28DRAFT_4429at 97.920 kb on + strand, within EX28DRAFT_4429at 97.921 kb on - strand, within EX28DRAFT_4429at 97.921 kb on - strand, within EX28DRAFT_4429at 97.944 kb on + strand, within EX28DRAFT_4429at 97.944 kb on + strand, within EX28DRAFT_4429at 97.944 kb on + strand, within EX28DRAFT_4429at 98.966 kb on - strandat 99.041 kb on + strandat 99.041 kb on + strandat 99.042 kb on - strandat 99.044 kb on - strandat 99.075 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media no stress control
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95,424 + EX28DRAFT_4428 0.50 +0.3
95,620 + EX28DRAFT_4428 0.68 +1.5
95,620 + EX28DRAFT_4428 0.68 +1.8
95,621 - EX28DRAFT_4428 0.68 -0.1
95,621 - EX28DRAFT_4428 0.68 +0.3
95,621 - EX28DRAFT_4428 0.68 +0.8
95,621 - EX28DRAFT_4428 0.68 -1.2
95,905 + +0.2
95,905 + -0.2
95,947 - +0.3
95,947 - +0.4
95,994 + +0.4
96,002 + -0.0
96,015 + -0.4
96,053 + +0.4
96,053 + -0.6
96,053 + -0.1
96,054 - +0.3
96,071 + +1.0
96,071 + +0.2
96,071 + -0.3
96,072 - +0.1
96,072 - +1.3
96,072 - -0.8
96,080 - +0.5
96,080 - -0.2
96,086 - +0.2
96,086 - +0.7
96,086 - -0.2
96,132 - -0.3
96,181 - -0.8
96,181 - +0.5
96,212 + +0.3
96,212 + +0.0
96,212 + +0.0
96,212 + +0.9
96,213 - -0.2
96,213 - -1.0
96,213 - +0.2
96,213 - +0.4
96,213 - -0.5
96,213 - -0.1
96,213 - +0.2
96,213 - +0.6
96,213 - +0.4
96,214 + -0.1
96,214 + +0.8
96,214 + -0.5
96,214 + -0.3
96,215 - -0.1
96,215 - +0.2
96,216 + +0.4
96,217 - -0.0
96,217 - +0.3
96,224 + -1.1
96,276 + +0.1
96,303 + +0.5
96,303 + +1.6
96,303 + +0.0
96,303 + +0.1
96,304 - +0.4
96,304 - -0.1
96,304 - -0.0
96,304 - +0.1
96,304 - +0.8
96,305 + -0.1
96,305 + +0.0
96,306 - -0.5
96,306 - +0.2
96,515 + EX28DRAFT_4429 0.10 -0.0
96,516 - EX28DRAFT_4429 0.10 -0.1
96,582 - EX28DRAFT_4429 0.14 +0.2
96,583 + EX28DRAFT_4429 0.14 -1.3
96,583 + EX28DRAFT_4429 0.14 +0.1
96,583 + EX28DRAFT_4429 0.14 -0.0
96,584 - EX28DRAFT_4429 0.14 +0.5
96,731 - EX28DRAFT_4429 0.22 +0.8
96,732 + EX28DRAFT_4429 0.22 -0.1
96,768 - EX28DRAFT_4429 0.24 +0.4
96,768 - EX28DRAFT_4429 0.24 +0.8
96,770 + EX28DRAFT_4429 0.24 +0.3
96,835 - EX28DRAFT_4429 0.28 +0.6
96,894 + EX28DRAFT_4429 0.31 +0.1
96,894 + EX28DRAFT_4429 0.31 -0.4
96,895 - EX28DRAFT_4429 0.31 +0.3
96,978 - EX28DRAFT_4429 0.35 +0.3
96,987 + EX28DRAFT_4429 0.36 +0.2
97,066 - EX28DRAFT_4429 0.40 +0.1
97,077 + EX28DRAFT_4429 0.41 -0.1
97,078 - EX28DRAFT_4429 0.41 +0.2
97,099 + EX28DRAFT_4429 0.42 +0.0
97,100 - EX28DRAFT_4429 0.42 +0.3
97,122 + EX28DRAFT_4429 0.43 +0.5
97,122 + EX28DRAFT_4429 0.43 -0.0
97,122 + EX28DRAFT_4429 0.43 -0.1
97,123 - EX28DRAFT_4429 0.43 -0.0
97,123 - EX28DRAFT_4429 0.43 -0.2
97,124 + EX28DRAFT_4429 0.43 -0.2
97,191 + EX28DRAFT_4429 0.47 +0.3
97,191 + EX28DRAFT_4429 0.47 -0.0
97,191 + EX28DRAFT_4429 0.47 +0.2
97,192 - EX28DRAFT_4429 0.47 +0.4
97,193 + EX28DRAFT_4429 0.47 -0.0
97,209 + EX28DRAFT_4429 0.48 -0.0
97,209 + EX28DRAFT_4429 0.48 +0.0
97,209 + EX28DRAFT_4429 0.48 +0.2
97,209 + EX28DRAFT_4429 0.48 -0.3
97,210 - EX28DRAFT_4429 0.48 +0.1
97,212 - EX28DRAFT_4429 0.48 +0.3
97,216 - EX28DRAFT_4429 0.48 -0.1
97,272 + EX28DRAFT_4429 0.51 +1.0
97,273 - EX28DRAFT_4429 0.51 -0.2
97,273 - EX28DRAFT_4429 0.51 -0.3
97,273 - EX28DRAFT_4429 0.51 +1.1
97,368 + EX28DRAFT_4429 0.56 +0.6
97,369 - EX28DRAFT_4429 0.57 -0.0
97,407 + EX28DRAFT_4429 0.59 +0.3
97,551 + EX28DRAFT_4429 0.66 +0.2
97,552 - EX28DRAFT_4429 0.66 -0.2
97,552 - EX28DRAFT_4429 0.66 +0.4
97,556 + EX28DRAFT_4429 0.67 +0.5
97,563 + EX28DRAFT_4429 0.67 -1.2
97,566 - EX28DRAFT_4429 0.67 +0.1
97,591 - EX28DRAFT_4429 0.69 -0.1
97,591 - EX28DRAFT_4429 0.69 +0.6
97,591 - EX28DRAFT_4429 0.69 +0.3
97,600 - EX28DRAFT_4429 0.69 +0.1
97,697 + EX28DRAFT_4429 0.74 +0.1
97,730 + EX28DRAFT_4429 0.76 -0.4
97,731 - EX28DRAFT_4429 0.76 +0.3
97,744 - EX28DRAFT_4429 0.77 +0.2
97,746 + EX28DRAFT_4429 0.77 +0.2
97,770 - EX28DRAFT_4429 0.78 -0.2
97,818 - EX28DRAFT_4429 0.81 -0.1
97,822 + EX28DRAFT_4429 0.81 -0.3
97,833 + EX28DRAFT_4429 0.82 -0.3
97,833 + EX28DRAFT_4429 0.82 -0.0
97,920 + EX28DRAFT_4429 0.86 +0.6
97,921 - EX28DRAFT_4429 0.86 +0.3
97,921 - EX28DRAFT_4429 0.86 +1.3
97,944 + EX28DRAFT_4429 0.88 +0.4
97,944 + EX28DRAFT_4429 0.88 +0.2
97,944 + EX28DRAFT_4429 0.88 +0.0
98,966 - -0.3
99,041 + -0.1
99,041 + -0.4
99,042 - +0.3
99,044 - +0.1
99,075 + +0.1

Or see this region's nucleotide sequence