Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4349

Experiment: MS_media no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_4348 and EX28DRAFT_4349 are separated by 72 nucleotidesEX28DRAFT_4349 and EX28DRAFT_4350 are separated by 111 nucleotides EX28DRAFT_4348: EX28DRAFT_4348 - oxygen-independent coproporphyrinogen III oxidase, at 9,912 to 11,285 _4348 EX28DRAFT_4349: EX28DRAFT_4349 - hypothetical protein, at 11,358 to 11,468 _4349 EX28DRAFT_4350: EX28DRAFT_4350 - nitrogen regulation protein NR(I), at 11,580 to 12,992 _4350 Position (kb) 11 12Strain fitness (log2 ratio) -3 -2 -1 0 1at 10.387 kb on + strand, within EX28DRAFT_4348at 10.387 kb on + strand, within EX28DRAFT_4348at 11.216 kb on + strandat 11.284 kb on - strandat 11.311 kb on + strandat 11.311 kb on + strandat 11.345 kb on + strandat 11.364 kb on - strandat 11.448 kb on - strand, within EX28DRAFT_4349at 11.448 kb on - strand, within EX28DRAFT_4349at 11.500 kb on + strandat 11.500 kb on + strandat 11.501 kb on - strandat 11.501 kb on - strandat 11.501 kb on - strandat 11.501 kb on - strandat 11.520 kb on + strandat 11.575 kb on + strandat 12.042 kb on - strand, within EX28DRAFT_4350

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media no stress control
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10,387 + EX28DRAFT_4348 0.35 -0.8
10,387 + EX28DRAFT_4348 0.35 -0.5
11,216 + +1.2
11,284 - +0.7
11,311 + +0.0
11,311 + +0.2
11,345 + +0.3
11,364 - -0.7
11,448 - EX28DRAFT_4349 0.81 -1.5
11,448 - EX28DRAFT_4349 0.81 +0.2
11,500 + +0.3
11,500 + +0.2
11,501 - +0.3
11,501 - +0.1
11,501 - -0.3
11,501 - +0.2
11,520 + +0.5
11,575 + +0.7
12,042 - EX28DRAFT_4350 0.33 -2.9

Or see this region's nucleotide sequence