Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4307

Experiment: MS_media no stress control

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX28DRAFT_4306 and EX28DRAFT_4307 are separated by 114 nucleotidesEX28DRAFT_4307 and EX28DRAFT_4308 are separated by 71 nucleotides EX28DRAFT_4306: EX28DRAFT_4306 - Maltose operon periplasmic protein precursor (MalM), at 109,200 to 110,153 _4306 EX28DRAFT_4307: EX28DRAFT_4307 - Maltoporin (phage lambda and maltose receptor), at 110,268 to 111,581 _4307 EX28DRAFT_4308: EX28DRAFT_4308 - ABC-type sugar transport systems, ATPase components, at 111,653 to 112,762 _4308 Position (kb) 110 111 112Strain fitness (log2 ratio) -1 0 1 2at 109.337 kb on - strand, within EX28DRAFT_4306at 109.337 kb on - strand, within EX28DRAFT_4306at 109.432 kb on + strand, within EX28DRAFT_4306at 109.451 kb on + strand, within EX28DRAFT_4306at 109.456 kb on - strand, within EX28DRAFT_4306at 109.520 kb on + strand, within EX28DRAFT_4306at 109.520 kb on + strand, within EX28DRAFT_4306at 109.632 kb on - strand, within EX28DRAFT_4306at 109.637 kb on + strand, within EX28DRAFT_4306at 109.637 kb on + strand, within EX28DRAFT_4306at 109.651 kb on - strand, within EX28DRAFT_4306at 109.681 kb on + strand, within EX28DRAFT_4306at 109.681 kb on + strand, within EX28DRAFT_4306at 109.682 kb on - strand, within EX28DRAFT_4306at 109.682 kb on - strand, within EX28DRAFT_4306at 109.682 kb on - strand, within EX28DRAFT_4306at 109.766 kb on + strand, within EX28DRAFT_4306at 109.766 kb on + strand, within EX28DRAFT_4306at 109.766 kb on + strand, within EX28DRAFT_4306at 109.766 kb on + strand, within EX28DRAFT_4306at 109.766 kb on + strand, within EX28DRAFT_4306at 109.767 kb on - strand, within EX28DRAFT_4306at 109.767 kb on - strand, within EX28DRAFT_4306at 109.767 kb on - strand, within EX28DRAFT_4306at 110.157 kb on + strandat 110.157 kb on + strandat 110.158 kb on - strandat 110.158 kb on - strandat 110.158 kb on - strandat 110.161 kb on - strandat 110.197 kb on + strandat 110.243 kb on - strandat 110.250 kb on + strandat 110.251 kb on - strandat 110.251 kb on - strandat 110.269 kb on + strandat 110.269 kb on + strandat 110.369 kb on - strandat 110.493 kb on - strand, within EX28DRAFT_4307at 110.587 kb on + strand, within EX28DRAFT_4307at 110.587 kb on + strand, within EX28DRAFT_4307at 110.587 kb on + strand, within EX28DRAFT_4307at 110.587 kb on + strand, within EX28DRAFT_4307at 110.587 kb on + strand, within EX28DRAFT_4307at 110.587 kb on + strand, within EX28DRAFT_4307at 110.588 kb on - strand, within EX28DRAFT_4307at 110.591 kb on + strand, within EX28DRAFT_4307at 110.653 kb on + strand, within EX28DRAFT_4307at 110.654 kb on - strand, within EX28DRAFT_4307at 110.654 kb on - strand, within EX28DRAFT_4307at 110.657 kb on + strand, within EX28DRAFT_4307at 110.657 kb on + strand, within EX28DRAFT_4307at 110.665 kb on + strand, within EX28DRAFT_4307at 110.665 kb on + strand, within EX28DRAFT_4307at 110.665 kb on + strand, within EX28DRAFT_4307at 110.666 kb on - strand, within EX28DRAFT_4307at 110.666 kb on - strand, within EX28DRAFT_4307at 110.780 kb on + strand, within EX28DRAFT_4307at 110.780 kb on + strand, within EX28DRAFT_4307at 110.780 kb on + strand, within EX28DRAFT_4307at 110.781 kb on - strand, within EX28DRAFT_4307at 110.888 kb on - strand, within EX28DRAFT_4307at 110.888 kb on - strand, within EX28DRAFT_4307at 110.890 kb on + strand, within EX28DRAFT_4307at 110.891 kb on - strand, within EX28DRAFT_4307at 110.891 kb on - strand, within EX28DRAFT_4307at 110.891 kb on - strand, within EX28DRAFT_4307at 111.011 kb on + strand, within EX28DRAFT_4307at 111.011 kb on + strand, within EX28DRAFT_4307at 111.012 kb on - strand, within EX28DRAFT_4307at 111.012 kb on - strand, within EX28DRAFT_4307at 111.012 kb on - strand, within EX28DRAFT_4307at 111.149 kb on - strand, within EX28DRAFT_4307at 111.152 kb on - strand, within EX28DRAFT_4307at 111.307 kb on + strand, within EX28DRAFT_4307at 111.329 kb on - strand, within EX28DRAFT_4307at 111.383 kb on - strand, within EX28DRAFT_4307at 111.409 kb on + strand, within EX28DRAFT_4307at 111.410 kb on - strand, within EX28DRAFT_4307at 111.410 kb on - strand, within EX28DRAFT_4307at 111.488 kb on - strandat 111.584 kb on + strandat 111.585 kb on - strandat 111.655 kb on - strandat 111.671 kb on - strandat 111.671 kb on - strandat 111.758 kb on + strandat 111.759 kb on - strandat 111.818 kb on - strand, within EX28DRAFT_4308at 111.945 kb on - strand, within EX28DRAFT_4308at 112.001 kb on + strand, within EX28DRAFT_4308at 112.063 kb on + strand, within EX28DRAFT_4308at 112.063 kb on + strand, within EX28DRAFT_4308at 112.063 kb on + strand, within EX28DRAFT_4308at 112.099 kb on - strand, within EX28DRAFT_4308at 112.198 kb on - strand, within EX28DRAFT_4308at 112.400 kb on + strand, within EX28DRAFT_4308at 112.477 kb on + strand, within EX28DRAFT_4308at 112.477 kb on + strand, within EX28DRAFT_4308at 112.477 kb on + strand, within EX28DRAFT_4308at 112.478 kb on - strand, within EX28DRAFT_4308at 112.478 kb on - strand, within EX28DRAFT_4308at 112.503 kb on + strand, within EX28DRAFT_4308at 112.512 kb on + strand, within EX28DRAFT_4308at 112.512 kb on + strand, within EX28DRAFT_4308at 112.513 kb on - strand, within EX28DRAFT_4308

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MS_media no stress control
remove
109,337 - EX28DRAFT_4306 0.14 -0.3
109,337 - EX28DRAFT_4306 0.14 -0.6
109,432 + EX28DRAFT_4306 0.24 +0.8
109,451 + EX28DRAFT_4306 0.26 -0.0
109,456 - EX28DRAFT_4306 0.27 -0.2
109,520 + EX28DRAFT_4306 0.34 +0.3
109,520 + EX28DRAFT_4306 0.34 +0.0
109,632 - EX28DRAFT_4306 0.45 +0.3
109,637 + EX28DRAFT_4306 0.46 +1.0
109,637 + EX28DRAFT_4306 0.46 -0.2
109,651 - EX28DRAFT_4306 0.47 -0.3
109,681 + EX28DRAFT_4306 0.50 +0.6
109,681 + EX28DRAFT_4306 0.50 -0.2
109,682 - EX28DRAFT_4306 0.51 -0.3
109,682 - EX28DRAFT_4306 0.51 +0.2
109,682 - EX28DRAFT_4306 0.51 -0.4
109,766 + EX28DRAFT_4306 0.59 +0.7
109,766 + EX28DRAFT_4306 0.59 -0.1
109,766 + EX28DRAFT_4306 0.59 +0.5
109,766 + EX28DRAFT_4306 0.59 +0.0
109,766 + EX28DRAFT_4306 0.59 +0.7
109,767 - EX28DRAFT_4306 0.59 +0.4
109,767 - EX28DRAFT_4306 0.59 +0.1
109,767 - EX28DRAFT_4306 0.59 -0.1
110,157 + +1.3
110,157 + -0.4
110,158 - +0.1
110,158 - +0.0
110,158 - +0.6
110,161 - +0.4
110,197 + -0.3
110,243 - +0.1
110,250 + +0.1
110,251 - +1.6
110,251 - +0.3
110,269 + +0.0
110,269 + +0.2
110,369 - -0.1
110,493 - EX28DRAFT_4307 0.17 -0.1
110,587 + EX28DRAFT_4307 0.24 +0.7
110,587 + EX28DRAFT_4307 0.24 +0.2
110,587 + EX28DRAFT_4307 0.24 -0.8
110,587 + EX28DRAFT_4307 0.24 -0.2
110,587 + EX28DRAFT_4307 0.24 +1.1
110,587 + EX28DRAFT_4307 0.24 +1.0
110,588 - EX28DRAFT_4307 0.24 -0.2
110,591 + EX28DRAFT_4307 0.25 -0.3
110,653 + EX28DRAFT_4307 0.29 +2.7
110,654 - EX28DRAFT_4307 0.29 +1.4
110,654 - EX28DRAFT_4307 0.29 +0.3
110,657 + EX28DRAFT_4307 0.30 +0.3
110,657 + EX28DRAFT_4307 0.30 -0.9
110,665 + EX28DRAFT_4307 0.30 -0.3
110,665 + EX28DRAFT_4307 0.30 +0.1
110,665 + EX28DRAFT_4307 0.30 +0.1
110,666 - EX28DRAFT_4307 0.30 +0.9
110,666 - EX28DRAFT_4307 0.30 +0.0
110,780 + EX28DRAFT_4307 0.39 -0.4
110,780 + EX28DRAFT_4307 0.39 +0.2
110,780 + EX28DRAFT_4307 0.39 +1.0
110,781 - EX28DRAFT_4307 0.39 -0.4
110,888 - EX28DRAFT_4307 0.47 +0.1
110,888 - EX28DRAFT_4307 0.47 -0.3
110,890 + EX28DRAFT_4307 0.47 +0.3
110,891 - EX28DRAFT_4307 0.47 +0.1
110,891 - EX28DRAFT_4307 0.47 +0.2
110,891 - EX28DRAFT_4307 0.47 -0.0
111,011 + EX28DRAFT_4307 0.57 +0.3
111,011 + EX28DRAFT_4307 0.57 -1.0
111,012 - EX28DRAFT_4307 0.57 +1.6
111,012 - EX28DRAFT_4307 0.57 +1.2
111,012 - EX28DRAFT_4307 0.57 -0.2
111,149 - EX28DRAFT_4307 0.67 -0.0
111,152 - EX28DRAFT_4307 0.67 +0.2
111,307 + EX28DRAFT_4307 0.79 -0.7
111,329 - EX28DRAFT_4307 0.81 -1.3
111,383 - EX28DRAFT_4307 0.85 +0.2
111,409 + EX28DRAFT_4307 0.87 -0.1
111,410 - EX28DRAFT_4307 0.87 -0.1
111,410 - EX28DRAFT_4307 0.87 -0.1
111,488 - +0.0
111,584 + -0.9
111,585 - +0.2
111,655 - -0.3
111,671 - +0.0
111,671 - +0.7
111,758 + -0.8
111,759 - +0.7
111,818 - EX28DRAFT_4308 0.15 -0.2
111,945 - EX28DRAFT_4308 0.26 +0.5
112,001 + EX28DRAFT_4308 0.31 +1.9
112,063 + EX28DRAFT_4308 0.37 -0.7
112,063 + EX28DRAFT_4308 0.37 +0.1
112,063 + EX28DRAFT_4308 0.37 -0.1
112,099 - EX28DRAFT_4308 0.40 +0.1
112,198 - EX28DRAFT_4308 0.49 -1.5
112,400 + EX28DRAFT_4308 0.67 -0.3
112,477 + EX28DRAFT_4308 0.74 +0.4
112,477 + EX28DRAFT_4308 0.74 -0.2
112,477 + EX28DRAFT_4308 0.74 -0.2
112,478 - EX28DRAFT_4308 0.74 +0.4
112,478 - EX28DRAFT_4308 0.74 -0.1
112,503 + EX28DRAFT_4308 0.77 -0.5
112,512 + EX28DRAFT_4308 0.77 +0.4
112,512 + EX28DRAFT_4308 0.77 +0.3
112,513 - EX28DRAFT_4308 0.77 -0.7

Or see this region's nucleotide sequence