Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4292

Experiment: MS_media no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_4290 and EX28DRAFT_4291 are separated by 152 nucleotidesEX28DRAFT_4291 and EX28DRAFT_4292 are separated by 119 nucleotidesEX28DRAFT_4292 and EX28DRAFT_4293 are separated by 116 nucleotides EX28DRAFT_4290: EX28DRAFT_4290 - ABC-type branched-chain amino acid transport systems, periplasmic component, at 94,111 to 95,220 _4290 EX28DRAFT_4291: EX28DRAFT_4291 - hypothetical protein, at 95,373 to 95,525 _4291 EX28DRAFT_4292: EX28DRAFT_4292 - Acetyltransferase (GNAT) domain, at 95,645 to 96,034 _4292 EX28DRAFT_4293: EX28DRAFT_4293 - ABC-type branched-chain amino acid transport systems, periplasmic component, at 96,151 to 97,245 _4293 Position (kb) 95 96 97Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 94.760 kb on + strand, within EX28DRAFT_4290at 94.760 kb on + strand, within EX28DRAFT_4290at 94.761 kb on - strand, within EX28DRAFT_4290at 94.761 kb on - strand, within EX28DRAFT_4290at 94.886 kb on + strand, within EX28DRAFT_4290at 94.887 kb on - strand, within EX28DRAFT_4290at 94.937 kb on + strand, within EX28DRAFT_4290at 95.006 kb on + strand, within EX28DRAFT_4290at 95.262 kb on + strandat 95.263 kb on - strandat 95.271 kb on + strandat 95.272 kb on - strandat 95.396 kb on - strand, within EX28DRAFT_4291at 95.597 kb on + strandat 95.597 kb on + strandat 95.598 kb on - strandat 95.606 kb on + strandat 95.617 kb on + strandat 95.639 kb on + strandat 95.639 kb on + strandat 95.639 kb on + strandat 95.639 kb on + strandat 95.639 kb on + strandat 95.643 kb on + strandat 95.720 kb on + strand, within EX28DRAFT_4292at 95.721 kb on - strand, within EX28DRAFT_4292at 95.762 kb on + strand, within EX28DRAFT_4292at 95.762 kb on + strand, within EX28DRAFT_4292at 95.777 kb on - strand, within EX28DRAFT_4292at 95.883 kb on - strand, within EX28DRAFT_4292at 95.887 kb on - strand, within EX28DRAFT_4292at 95.887 kb on - strand, within EX28DRAFT_4292at 96.345 kb on - strand, within EX28DRAFT_4293at 96.345 kb on - strand, within EX28DRAFT_4293at 96.405 kb on + strand, within EX28DRAFT_4293at 96.405 kb on + strand, within EX28DRAFT_4293at 96.405 kb on + strand, within EX28DRAFT_4293at 96.590 kb on + strand, within EX28DRAFT_4293at 96.738 kb on - strand, within EX28DRAFT_4293at 96.795 kb on - strand, within EX28DRAFT_4293at 96.907 kb on - strand, within EX28DRAFT_4293at 96.920 kb on + strand, within EX28DRAFT_4293at 96.920 kb on + strand, within EX28DRAFT_4293at 96.921 kb on - strand, within EX28DRAFT_4293at 96.971 kb on + strand, within EX28DRAFT_4293at 96.971 kb on + strand, within EX28DRAFT_4293at 96.971 kb on + strand, within EX28DRAFT_4293at 96.972 kb on - strand, within EX28DRAFT_4293at 96.972 kb on - strand, within EX28DRAFT_4293

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media no stress control
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94,760 + EX28DRAFT_4290 0.58 +0.5
94,760 + EX28DRAFT_4290 0.58 -1.0
94,761 - EX28DRAFT_4290 0.59 +0.1
94,761 - EX28DRAFT_4290 0.59 -0.3
94,886 + EX28DRAFT_4290 0.70 +0.2
94,887 - EX28DRAFT_4290 0.70 -0.7
94,937 + EX28DRAFT_4290 0.74 +0.4
95,006 + EX28DRAFT_4290 0.81 +0.2
95,262 + +0.2
95,263 - -0.5
95,271 + +0.6
95,272 - -0.0
95,396 - EX28DRAFT_4291 0.15 +0.6
95,597 + +0.3
95,597 + +0.4
95,598 - -0.1
95,606 + +0.4
95,617 + -0.0
95,639 + -0.3
95,639 + -1.1
95,639 + -0.7
95,639 + -1.3
95,639 + -0.7
95,643 + +0.9
95,720 + EX28DRAFT_4292 0.19 -3.1
95,721 - EX28DRAFT_4292 0.19 -2.1
95,762 + EX28DRAFT_4292 0.30 -1.5
95,762 + EX28DRAFT_4292 0.30 -0.5
95,777 - EX28DRAFT_4292 0.34 -1.1
95,883 - EX28DRAFT_4292 0.61 -3.5
95,887 - EX28DRAFT_4292 0.62 -2.3
95,887 - EX28DRAFT_4292 0.62 -2.9
96,345 - EX28DRAFT_4293 0.18 +0.1
96,345 - EX28DRAFT_4293 0.18 -0.2
96,405 + EX28DRAFT_4293 0.23 -0.3
96,405 + EX28DRAFT_4293 0.23 +2.5
96,405 + EX28DRAFT_4293 0.23 +0.6
96,590 + EX28DRAFT_4293 0.40 +0.5
96,738 - EX28DRAFT_4293 0.54 +0.4
96,795 - EX28DRAFT_4293 0.59 +0.2
96,907 - EX28DRAFT_4293 0.69 -0.7
96,920 + EX28DRAFT_4293 0.70 -0.6
96,920 + EX28DRAFT_4293 0.70 +0.2
96,921 - EX28DRAFT_4293 0.70 +0.0
96,971 + EX28DRAFT_4293 0.75 -2.7
96,971 + EX28DRAFT_4293 0.75 +0.1
96,971 + EX28DRAFT_4293 0.75 +0.5
96,972 - EX28DRAFT_4293 0.75 +0.6
96,972 - EX28DRAFT_4293 0.75 +0.6

Or see this region's nucleotide sequence