Experiment: MS_media no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_4174 and EX28DRAFT_4175 are separated by 30 nucleotides EX28DRAFT_4175 and EX28DRAFT_4176 overlap by 4 nucleotides EX28DRAFT_4176 and EX28DRAFT_4177 are separated by 112 nucleotides
EX28DRAFT_4174: EX28DRAFT_4174 - Phosphoribulokinase, at 157,709 to 158,578
_4174
EX28DRAFT_4175: EX28DRAFT_4175 - Uncharacterized protein conserved in bacteria, at 158,609 to 158,827
_4175
EX28DRAFT_4176: EX28DRAFT_4176 - Predicted hydrolase of the alpha/beta-hydrolase fold, at 158,824 to 159,846
_4176
EX28DRAFT_4177: EX28DRAFT_4177 - ATPase components of ABC transporters with duplicated ATPase domains, at 159,959 to 161,863
_4177
Position (kb) 158
159
160 Strain fitness (log2 ratio) -2
-1
0
1 at 157.942 kb on + strand, within EX28DRAFT_4174 at 157.943 kb on - strand, within EX28DRAFT_4174 at 157.947 kb on - strand, within EX28DRAFT_4174 at 158.005 kb on + strand, within EX28DRAFT_4174 at 158.005 kb on + strand, within EX28DRAFT_4174 at 158.005 kb on + strand, within EX28DRAFT_4174 at 158.010 kb on + strand, within EX28DRAFT_4174 at 158.010 kb on + strand, within EX28DRAFT_4174 at 158.278 kb on - strand, within EX28DRAFT_4174 at 158.278 kb on - strand, within EX28DRAFT_4174 at 158.278 kb on - strand, within EX28DRAFT_4174 at 158.278 kb on - strand, within EX28DRAFT_4174 at 158.278 kb on - strand, within EX28DRAFT_4174 at 158.377 kb on - strand, within EX28DRAFT_4174 at 158.578 kb on + strand at 158.578 kb on + strand at 158.579 kb on - strand at 158.579 kb on - strand at 158.579 kb on - strand at 158.579 kb on - strand at 158.701 kb on + strand, within EX28DRAFT_4175 at 158.765 kb on + strand, within EX28DRAFT_4175 at 158.766 kb on - strand, within EX28DRAFT_4175 at 158.766 kb on - strand, within EX28DRAFT_4175 at 159.021 kb on + strand, within EX28DRAFT_4176 at 159.021 kb on + strand, within EX28DRAFT_4176 at 159.078 kb on - strand, within EX28DRAFT_4176 at 159.440 kb on - strand, within EX28DRAFT_4176 at 159.440 kb on - strand, within EX28DRAFT_4176 at 159.477 kb on - strand, within EX28DRAFT_4176 at 159.630 kb on + strand, within EX28DRAFT_4176 at 159.784 kb on - strand at 159.846 kb on + strand at 159.881 kb on + strand at 159.882 kb on - strand at 159.904 kb on + strand at 159.952 kb on - strand at 159.955 kb on + strand at 159.956 kb on - strand at 160.092 kb on + strand at 160.321 kb on - strand, within EX28DRAFT_4177 at 160.371 kb on + strand, within EX28DRAFT_4177 at 160.371 kb on + strand, within EX28DRAFT_4177 at 160.372 kb on - strand, within EX28DRAFT_4177 at 160.372 kb on - strand, within EX28DRAFT_4177 at 160.728 kb on + strand, within EX28DRAFT_4177
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media no stress control remove 157,942 + EX28DRAFT_4174 0.27 -0.1 157,943 - EX28DRAFT_4174 0.27 +0.8 157,947 - EX28DRAFT_4174 0.27 +0.5 158,005 + EX28DRAFT_4174 0.34 -0.0 158,005 + EX28DRAFT_4174 0.34 -0.3 158,005 + EX28DRAFT_4174 0.34 +0.1 158,010 + EX28DRAFT_4174 0.35 +1.2 158,010 + EX28DRAFT_4174 0.35 +0.2 158,278 - EX28DRAFT_4174 0.65 +0.2 158,278 - EX28DRAFT_4174 0.65 +1.7 158,278 - EX28DRAFT_4174 0.65 +0.5 158,278 - EX28DRAFT_4174 0.65 +0.2 158,278 - EX28DRAFT_4174 0.65 -1.8 158,377 - EX28DRAFT_4174 0.77 +0.2 158,578 + -0.1 158,578 + -0.2 158,579 - -0.9 158,579 - +0.1 158,579 - -0.7 158,579 - +0.4 158,701 + EX28DRAFT_4175 0.42 +0.6 158,765 + EX28DRAFT_4175 0.71 -0.3 158,766 - EX28DRAFT_4175 0.72 +0.2 158,766 - EX28DRAFT_4175 0.72 +0.1 159,021 + EX28DRAFT_4176 0.19 +0.9 159,021 + EX28DRAFT_4176 0.19 +0.2 159,078 - EX28DRAFT_4176 0.25 +0.1 159,440 - EX28DRAFT_4176 0.60 +0.3 159,440 - EX28DRAFT_4176 0.60 +0.4 159,477 - EX28DRAFT_4176 0.64 +0.3 159,630 + EX28DRAFT_4176 0.79 +1.0 159,784 - -0.4 159,846 + -0.7 159,881 + +0.5 159,882 - -0.0 159,904 + -0.1 159,952 - +0.2 159,955 + +0.2 159,956 - -0.0 160,092 + +0.0 160,321 - EX28DRAFT_4177 0.19 -0.2 160,371 + EX28DRAFT_4177 0.22 +0.7 160,371 + EX28DRAFT_4177 0.22 +0.3 160,372 - EX28DRAFT_4177 0.22 -0.0 160,372 - EX28DRAFT_4177 0.22 +0.2 160,728 + EX28DRAFT_4177 0.40 -0.1
Or see this region's nucleotide sequence