Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4038

Experiment: MS_media no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_4036 and EX28DRAFT_4037 overlap by 4 nucleotidesEX28DRAFT_4037 and EX28DRAFT_4038 are separated by 16 nucleotidesEX28DRAFT_4038 and EX28DRAFT_4039 are separated by 48 nucleotides EX28DRAFT_4036: EX28DRAFT_4036 - UDP-N-acetylmuramate dehydrogenase (EC 1.1.1.158), at 414 to 1,442 _4036 EX28DRAFT_4037: EX28DRAFT_4037 - birA, biotin-[acetyl-CoA-carboxylase] ligase region/BirA biotin operon repressor domain, at 1,439 to 2,401 _4037 EX28DRAFT_4038: EX28DRAFT_4038 - Glycosyl hydrolases family 8, at 2,418 to 3,410 _4038 EX28DRAFT_4039: EX28DRAFT_4039 - cellulose synthase operon protein YhjU, at 3,459 to 5,138 _4039 Position (kb) 2 3 4Strain fitness (log2 ratio) -1 0 1at 1.450 kb on + strandat 2.413 kb on + strandat 2.505 kb on + strandat 2.506 kb on - strandat 2.689 kb on - strand, within EX28DRAFT_4038at 2.699 kb on + strand, within EX28DRAFT_4038at 2.699 kb on + strand, within EX28DRAFT_4038at 2.832 kb on - strand, within EX28DRAFT_4038at 2.832 kb on - strand, within EX28DRAFT_4038at 2.866 kb on - strand, within EX28DRAFT_4038at 2.907 kb on - strand, within EX28DRAFT_4038at 2.941 kb on - strand, within EX28DRAFT_4038at 3.132 kb on + strand, within EX28DRAFT_4038at 3.132 kb on + strand, within EX28DRAFT_4038at 3.132 kb on + strand, within EX28DRAFT_4038at 3.133 kb on - strand, within EX28DRAFT_4038at 3.157 kb on - strand, within EX28DRAFT_4038at 3.277 kb on - strand, within EX28DRAFT_4038at 3.363 kb on + strandat 3.363 kb on + strandat 3.364 kb on - strandat 3.366 kb on + strandat 3.408 kb on + strandat 3.453 kb on - strandat 3.460 kb on + strandat 3.460 kb on + strandat 3.502 kb on + strandat 3.502 kb on + strandat 3.503 kb on - strandat 3.503 kb on - strandat 3.908 kb on + strand, within EX28DRAFT_4039at 3.908 kb on + strand, within EX28DRAFT_4039at 3.909 kb on - strand, within EX28DRAFT_4039at 3.909 kb on - strand, within EX28DRAFT_4039at 3.909 kb on - strand, within EX28DRAFT_4039at 3.911 kb on - strand, within EX28DRAFT_4039at 3.969 kb on - strand, within EX28DRAFT_4039at 4.243 kb on + strand, within EX28DRAFT_4039

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media no stress control
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1,450 + +0.5
2,413 + -0.1
2,505 + +0.5
2,506 - -1.3
2,689 - EX28DRAFT_4038 0.27 +0.6
2,699 + EX28DRAFT_4038 0.28 -0.5
2,699 + EX28DRAFT_4038 0.28 +0.3
2,832 - EX28DRAFT_4038 0.42 +0.0
2,832 - EX28DRAFT_4038 0.42 -0.3
2,866 - EX28DRAFT_4038 0.45 +0.6
2,907 - EX28DRAFT_4038 0.49 -0.4
2,941 - EX28DRAFT_4038 0.53 +1.0
3,132 + EX28DRAFT_4038 0.72 +0.7
3,132 + EX28DRAFT_4038 0.72 +0.5
3,132 + EX28DRAFT_4038 0.72 +0.1
3,133 - EX28DRAFT_4038 0.72 +0.2
3,157 - EX28DRAFT_4038 0.74 +0.3
3,277 - EX28DRAFT_4038 0.87 -0.6
3,363 + +0.5
3,363 + +0.7
3,364 - +0.5
3,366 + +0.4
3,408 + -1.0
3,453 - +0.2
3,460 + +0.2
3,460 + +0.3
3,502 + -0.8
3,502 + +0.1
3,503 - +0.5
3,503 - +0.5
3,908 + EX28DRAFT_4039 0.27 +1.0
3,908 + EX28DRAFT_4039 0.27 +0.3
3,909 - EX28DRAFT_4039 0.27 -0.3
3,909 - EX28DRAFT_4039 0.27 +0.2
3,909 - EX28DRAFT_4039 0.27 +0.5
3,911 - EX28DRAFT_4039 0.27 +0.2
3,969 - EX28DRAFT_4039 0.30 -1.3
4,243 + EX28DRAFT_4039 0.47 +0.5

Or see this region's nucleotide sequence