Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4030

Experiment: MS_media no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_4028 and EX28DRAFT_4029 are separated by 12 nucleotidesEX28DRAFT_4029 and EX28DRAFT_4030 overlap by 35 nucleotidesEX28DRAFT_4030 and EX28DRAFT_4031 overlap by 4 nucleotides EX28DRAFT_4028: EX28DRAFT_4028 - ribokinase, at 239,979 to 240,908 _4028 EX28DRAFT_4029: EX28DRAFT_4029 - transcriptional regulator, LacI family, at 240,921 to 241,904 _4029 EX28DRAFT_4030: EX28DRAFT_4030 - drug resistance transporter, EmrB/QacA subfamily, at 241,870 to 243,303 _4030 EX28DRAFT_4031: EX28DRAFT_4031 - Transcriptional regulators, at 243,300 to 244,007 _4031 Position (kb) 241 242 243 244Strain fitness (log2 ratio) -2 -1 0 1 2at 240.880 kb on + strandat 241.044 kb on + strand, within EX28DRAFT_4029at 241.074 kb on - strand, within EX28DRAFT_4029at 241.100 kb on + strand, within EX28DRAFT_4029at 241.132 kb on - strand, within EX28DRAFT_4029at 241.196 kb on + strand, within EX28DRAFT_4029at 241.196 kb on + strand, within EX28DRAFT_4029at 241.388 kb on + strand, within EX28DRAFT_4029at 241.507 kb on - strand, within EX28DRAFT_4029at 241.683 kb on + strand, within EX28DRAFT_4029at 241.684 kb on - strand, within EX28DRAFT_4029at 241.738 kb on + strand, within EX28DRAFT_4029at 241.753 kb on - strand, within EX28DRAFT_4029at 241.833 kb on - strandat 241.872 kb on - strandat 241.903 kb on - strandat 241.954 kb on + strandat 241.963 kb on - strandat 241.963 kb on - strandat 241.986 kb on + strandat 241.986 kb on + strandat 241.986 kb on + strandat 242.005 kb on - strandat 242.010 kb on + strandat 242.010 kb on + strandat 242.010 kb on + strandat 242.011 kb on - strandat 242.011 kb on - strandat 242.013 kb on - strandat 242.013 kb on - strandat 242.013 kb on - strandat 242.031 kb on + strand, within EX28DRAFT_4030at 242.032 kb on - strand, within EX28DRAFT_4030at 242.089 kb on + strand, within EX28DRAFT_4030at 242.356 kb on - strand, within EX28DRAFT_4030at 242.575 kb on + strand, within EX28DRAFT_4030at 242.576 kb on - strand, within EX28DRAFT_4030at 242.576 kb on - strand, within EX28DRAFT_4030at 242.576 kb on - strand, within EX28DRAFT_4030at 242.577 kb on + strand, within EX28DRAFT_4030at 242.578 kb on - strand, within EX28DRAFT_4030at 242.579 kb on + strand, within EX28DRAFT_4030at 242.579 kb on + strand, within EX28DRAFT_4030at 242.580 kb on - strand, within EX28DRAFT_4030at 242.591 kb on - strand, within EX28DRAFT_4030at 242.748 kb on + strand, within EX28DRAFT_4030at 242.749 kb on - strand, within EX28DRAFT_4030at 242.750 kb on + strand, within EX28DRAFT_4030at 242.750 kb on + strand, within EX28DRAFT_4030at 242.750 kb on + strand, within EX28DRAFT_4030at 242.751 kb on - strand, within EX28DRAFT_4030at 242.751 kb on - strand, within EX28DRAFT_4030at 242.751 kb on - strand, within EX28DRAFT_4030at 242.762 kb on + strand, within EX28DRAFT_4030at 242.763 kb on - strand, within EX28DRAFT_4030at 242.794 kb on - strand, within EX28DRAFT_4030at 242.794 kb on - strand, within EX28DRAFT_4030at 242.794 kb on - strand, within EX28DRAFT_4030at 242.994 kb on + strand, within EX28DRAFT_4030at 243.119 kb on - strand, within EX28DRAFT_4030at 243.141 kb on - strand, within EX28DRAFT_4030at 243.195 kb on + strandat 243.437 kb on + strand, within EX28DRAFT_4031at 243.438 kb on - strand, within EX28DRAFT_4031at 243.438 kb on - strand, within EX28DRAFT_4031at 243.443 kb on + strand, within EX28DRAFT_4031at 243.443 kb on + strand, within EX28DRAFT_4031at 243.444 kb on - strand, within EX28DRAFT_4031at 243.448 kb on + strand, within EX28DRAFT_4031at 243.448 kb on + strand, within EX28DRAFT_4031at 243.448 kb on + strand, within EX28DRAFT_4031at 243.449 kb on - strand, within EX28DRAFT_4031at 243.458 kb on - strand, within EX28DRAFT_4031at 243.512 kb on + strand, within EX28DRAFT_4031at 243.514 kb on + strand, within EX28DRAFT_4031at 243.514 kb on + strand, within EX28DRAFT_4031at 243.514 kb on + strand, within EX28DRAFT_4031at 243.514 kb on + strand, within EX28DRAFT_4031at 243.514 kb on + strand, within EX28DRAFT_4031at 243.514 kb on + strand, within EX28DRAFT_4031at 243.514 kb on + strand, within EX28DRAFT_4031at 243.515 kb on - strand, within EX28DRAFT_4031at 243.515 kb on - strand, within EX28DRAFT_4031at 243.515 kb on - strand, within EX28DRAFT_4031at 243.515 kb on - strand, within EX28DRAFT_4031at 243.515 kb on - strand, within EX28DRAFT_4031at 243.515 kb on - strand, within EX28DRAFT_4031at 243.515 kb on - strand, within EX28DRAFT_4031at 243.515 kb on - strand, within EX28DRAFT_4031at 243.515 kb on - strand, within EX28DRAFT_4031at 243.515 kb on - strand, within EX28DRAFT_4031at 243.515 kb on - strand, within EX28DRAFT_4031at 243.765 kb on - strand, within EX28DRAFT_4031at 243.812 kb on + strand, within EX28DRAFT_4031at 243.813 kb on - strand, within EX28DRAFT_4031at 243.916 kb on + strand, within EX28DRAFT_4031at 243.917 kb on - strand, within EX28DRAFT_4031at 243.917 kb on - strand, within EX28DRAFT_4031at 243.917 kb on - strand, within EX28DRAFT_4031at 243.920 kb on + strand, within EX28DRAFT_4031at 243.961 kb on + strandat 243.961 kb on + strandat 243.961 kb on + strandat 244.042 kb on - strandat 244.073 kb on + strandat 244.074 kb on - strandat 244.074 kb on - strandat 244.082 kb on + strandat 244.172 kb on - strandat 244.180 kb on - strandat 244.182 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media no stress control
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240,880 + +1.1
241,044 + EX28DRAFT_4029 0.12 -2.3
241,074 - EX28DRAFT_4029 0.16 +0.1
241,100 + EX28DRAFT_4029 0.18 +0.7
241,132 - EX28DRAFT_4029 0.21 +0.5
241,196 + EX28DRAFT_4029 0.28 +0.1
241,196 + EX28DRAFT_4029 0.28 +0.0
241,388 + EX28DRAFT_4029 0.47 -0.8
241,507 - EX28DRAFT_4029 0.60 -1.2
241,683 + EX28DRAFT_4029 0.77 +0.1
241,684 - EX28DRAFT_4029 0.78 +0.2
241,738 + EX28DRAFT_4029 0.83 +0.7
241,753 - EX28DRAFT_4029 0.85 +0.2
241,833 - +0.8
241,872 - +1.0
241,903 - -0.4
241,954 + -0.8
241,963 - -0.2
241,963 - -1.2
241,986 + +0.5
241,986 + -0.1
241,986 + +0.3
242,005 - +0.0
242,010 + +0.3
242,010 + +0.4
242,010 + +0.5
242,011 - -0.2
242,011 - +0.1
242,013 - -0.5
242,013 - +0.2
242,013 - +0.3
242,031 + EX28DRAFT_4030 0.11 -0.6
242,032 - EX28DRAFT_4030 0.11 +0.2
242,089 + EX28DRAFT_4030 0.15 +0.2
242,356 - EX28DRAFT_4030 0.34 +0.4
242,575 + EX28DRAFT_4030 0.49 +0.5
242,576 - EX28DRAFT_4030 0.49 +1.0
242,576 - EX28DRAFT_4030 0.49 +1.0
242,576 - EX28DRAFT_4030 0.49 -0.5
242,577 + EX28DRAFT_4030 0.49 +0.3
242,578 - EX28DRAFT_4030 0.49 +0.4
242,579 + EX28DRAFT_4030 0.49 +0.0
242,579 + EX28DRAFT_4030 0.49 -0.4
242,580 - EX28DRAFT_4030 0.50 +0.1
242,591 - EX28DRAFT_4030 0.50 +0.2
242,748 + EX28DRAFT_4030 0.61 -1.0
242,749 - EX28DRAFT_4030 0.61 -1.7
242,750 + EX28DRAFT_4030 0.61 +1.1
242,750 + EX28DRAFT_4030 0.61 -0.2
242,750 + EX28DRAFT_4030 0.61 +0.1
242,751 - EX28DRAFT_4030 0.61 +0.1
242,751 - EX28DRAFT_4030 0.61 -0.3
242,751 - EX28DRAFT_4030 0.61 +0.4
242,762 + EX28DRAFT_4030 0.62 +1.5
242,763 - EX28DRAFT_4030 0.62 -0.2
242,794 - EX28DRAFT_4030 0.64 +1.7
242,794 - EX28DRAFT_4030 0.64 +1.0
242,794 - EX28DRAFT_4030 0.64 +0.9
242,994 + EX28DRAFT_4030 0.78 +0.1
243,119 - EX28DRAFT_4030 0.87 -0.4
243,141 - EX28DRAFT_4030 0.89 -0.1
243,195 + +0.6
243,437 + EX28DRAFT_4031 0.19 +0.7
243,438 - EX28DRAFT_4031 0.19 +0.2
243,438 - EX28DRAFT_4031 0.19 +2.0
243,443 + EX28DRAFT_4031 0.20 +2.7
243,443 + EX28DRAFT_4031 0.20 +0.3
243,444 - EX28DRAFT_4031 0.20 -0.4
243,448 + EX28DRAFT_4031 0.21 -0.2
243,448 + EX28DRAFT_4031 0.21 +0.3
243,448 + EX28DRAFT_4031 0.21 +0.3
243,449 - EX28DRAFT_4031 0.21 +0.4
243,458 - EX28DRAFT_4031 0.22 +1.2
243,512 + EX28DRAFT_4031 0.30 +0.3
243,514 + EX28DRAFT_4031 0.30 +0.1
243,514 + EX28DRAFT_4031 0.30 +0.2
243,514 + EX28DRAFT_4031 0.30 -0.9
243,514 + EX28DRAFT_4031 0.30 +0.6
243,514 + EX28DRAFT_4031 0.30 -0.9
243,514 + EX28DRAFT_4031 0.30 +1.0
243,514 + EX28DRAFT_4031 0.30 +0.1
243,515 - EX28DRAFT_4031 0.30 +0.3
243,515 - EX28DRAFT_4031 0.30 +0.3
243,515 - EX28DRAFT_4031 0.30 +0.4
243,515 - EX28DRAFT_4031 0.30 +0.5
243,515 - EX28DRAFT_4031 0.30 +0.2
243,515 - EX28DRAFT_4031 0.30 +0.2
243,515 - EX28DRAFT_4031 0.30 -0.6
243,515 - EX28DRAFT_4031 0.30 +0.4
243,515 - EX28DRAFT_4031 0.30 +0.1
243,515 - EX28DRAFT_4031 0.30 +0.7
243,515 - EX28DRAFT_4031 0.30 -0.4
243,765 - EX28DRAFT_4031 0.66 +0.1
243,812 + EX28DRAFT_4031 0.72 -0.2
243,813 - EX28DRAFT_4031 0.72 +0.1
243,916 + EX28DRAFT_4031 0.87 -1.5
243,917 - EX28DRAFT_4031 0.87 -0.0
243,917 - EX28DRAFT_4031 0.87 +0.2
243,917 - EX28DRAFT_4031 0.87 -0.3
243,920 + EX28DRAFT_4031 0.88 +0.3
243,961 + +0.5
243,961 + +0.1
243,961 + -0.6
244,042 - +0.0
244,073 + +0.4
244,074 - -0.5
244,074 - +0.2
244,082 + +0.2
244,172 - +0.5
244,180 - -1.1
244,182 - +0.1

Or see this region's nucleotide sequence