Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3908

Experiment: MS_media no stress control

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX28DRAFT_3907 and EX28DRAFT_3908 are separated by 645 nucleotidesEX28DRAFT_3908 and EX28DRAFT_3909 are separated by 134 nucleotidesEX28DRAFT_3909 and EX28DRAFT_3910 overlap by 4 nucleotidesEX28DRAFT_3910 and EX28DRAFT_3911 are separated by 28 nucleotides EX28DRAFT_3907: EX28DRAFT_3907 - tRNA, at 119,715 to 119,805 _3907 EX28DRAFT_3908: EX28DRAFT_3908 - hypothetical protein, at 120,451 to 120,690 _3908 EX28DRAFT_3909: EX28DRAFT_3909 - Uncharacterized protein conserved in bacteria, at 120,825 to 121,175 _3909 EX28DRAFT_3910: EX28DRAFT_3910 - Helix-turn-helix domain, at 121,172 to 121,471 _3910 EX28DRAFT_3911: EX28DRAFT_3911 - Sortase and related acyltransferases, at 121,500 to 121,949 _3911 Position (kb) 120 121Strain fitness (log2 ratio) -2 -1 0 1at 119.479 kb on - strandat 119.617 kb on - strandat 119.674 kb on + strandat 119.679 kb on - strandat 119.679 kb on - strandat 119.680 kb on + strandat 119.828 kb on + strandat 119.871 kb on + strandat 119.889 kb on + strandat 120.057 kb on - strandat 120.090 kb on + strandat 120.230 kb on + strandat 120.233 kb on - strandat 120.332 kb on - strandat 120.450 kb on - strandat 120.505 kb on - strand, within EX28DRAFT_3908at 120.575 kb on + strand, within EX28DRAFT_3908at 120.583 kb on + strand, within EX28DRAFT_3908at 120.655 kb on - strand, within EX28DRAFT_3908at 120.725 kb on - strandat 120.737 kb on - strandat 120.777 kb on + strandat 120.791 kb on + strandat 120.850 kb on + strandat 120.851 kb on - strandat 120.913 kb on + strand, within EX28DRAFT_3909at 120.928 kb on - strand, within EX28DRAFT_3909at 120.978 kb on + strand, within EX28DRAFT_3909at 120.979 kb on - strand, within EX28DRAFT_3909at 121.002 kb on - strand, within EX28DRAFT_3909at 121.024 kb on + strand, within EX28DRAFT_3909at 121.025 kb on - strand, within EX28DRAFT_3909at 121.089 kb on - strand, within EX28DRAFT_3909at 121.104 kb on + strand, within EX28DRAFT_3909at 121.105 kb on - strand, within EX28DRAFT_3909at 121.183 kb on - strandat 121.225 kb on + strand, within EX28DRAFT_3910at 121.225 kb on + strand, within EX28DRAFT_3910at 121.387 kb on + strand, within EX28DRAFT_3910at 121.395 kb on - strand, within EX28DRAFT_3910at 121.466 kb on - strandat 121.470 kb on - strandat 121.494 kb on + strandat 121.517 kb on + strandat 121.517 kb on + strandat 121.518 kb on - strandat 121.518 kb on - strandat 121.518 kb on - strandat 121.518 kb on - strandat 121.521 kb on + strandat 121.521 kb on + strandat 121.521 kb on + strandat 121.521 kb on + strandat 121.522 kb on - strandat 121.522 kb on - strandat 121.522 kb on - strandat 121.522 kb on - strandat 121.522 kb on - strandat 121.584 kb on - strand, within EX28DRAFT_3911at 121.584 kb on - strand, within EX28DRAFT_3911

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MS_media no stress control
remove
119,479 - -0.3
119,617 - -0.2
119,674 + -0.3
119,679 - -0.4
119,679 - -0.5
119,680 + -0.5
119,828 + -0.3
119,871 + +1.2
119,889 + -0.7
120,057 - -0.4
120,090 + -0.3
120,230 + +1.2
120,233 - +0.2
120,332 - -0.2
120,450 - -0.0
120,505 - EX28DRAFT_3908 0.23 -0.1
120,575 + EX28DRAFT_3908 0.52 -0.2
120,583 + EX28DRAFT_3908 0.55 -0.6
120,655 - EX28DRAFT_3908 0.85 -0.8
120,725 - -1.4
120,737 - +0.0
120,777 + -0.9
120,791 + -0.7
120,850 + -0.6
120,851 - +0.9
120,913 + EX28DRAFT_3909 0.25 +0.2
120,928 - EX28DRAFT_3909 0.29 +0.3
120,978 + EX28DRAFT_3909 0.44 -0.3
120,979 - EX28DRAFT_3909 0.44 +0.5
121,002 - EX28DRAFT_3909 0.50 -0.0
121,024 + EX28DRAFT_3909 0.57 -0.6
121,025 - EX28DRAFT_3909 0.57 -0.3
121,089 - EX28DRAFT_3909 0.75 -1.3
121,104 + EX28DRAFT_3909 0.79 -0.3
121,105 - EX28DRAFT_3909 0.80 +0.1
121,183 - +1.4
121,225 + EX28DRAFT_3910 0.18 +0.2
121,225 + EX28DRAFT_3910 0.18 +0.2
121,387 + EX28DRAFT_3910 0.72 -0.1
121,395 - EX28DRAFT_3910 0.74 -1.2
121,466 - +0.1
121,470 - +0.0
121,494 + +0.2
121,517 + +0.4
121,517 + +0.1
121,518 - -0.3
121,518 - -0.2
121,518 - -0.2
121,518 - +0.2
121,521 + -2.2
121,521 + +0.6
121,521 + -0.9
121,521 + -0.3
121,522 - +0.1
121,522 - -0.2
121,522 - -0.8
121,522 - +0.1
121,522 - +0.0
121,584 - EX28DRAFT_3911 0.19 -0.7
121,584 - EX28DRAFT_3911 0.19 -0.1

Or see this region's nucleotide sequence