Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3903

Experiment: MS_media no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3902 and EX28DRAFT_3903 are separated by 225 nucleotidesEX28DRAFT_3903 and EX28DRAFT_3904 are separated by 119 nucleotides EX28DRAFT_3902: EX28DRAFT_3902 - sodium--glutamate symport carrier (gltS), at 111,013 to 112,215 _3902 EX28DRAFT_3903: EX28DRAFT_3903 - uracil-xanthine permease, at 112,441 to 113,832 _3903 EX28DRAFT_3904: EX28DRAFT_3904 - AsmA family, at 113,952 to 115,655 _3904 Position (kb) 112 113 114Strain fitness (log2 ratio) -1 0 1at 111.583 kb on - strand, within EX28DRAFT_3902at 111.583 kb on - strand, within EX28DRAFT_3902at 111.583 kb on - strand, within EX28DRAFT_3902at 112.026 kb on + strand, within EX28DRAFT_3902at 112.026 kb on + strand, within EX28DRAFT_3902at 112.026 kb on + strand, within EX28DRAFT_3902at 112.027 kb on - strand, within EX28DRAFT_3902at 112.027 kb on - strand, within EX28DRAFT_3902at 112.215 kb on + strandat 112.216 kb on - strandat 112.216 kb on - strandat 112.244 kb on + strandat 112.330 kb on - strandat 112.457 kb on + strandat 112.457 kb on + strandat 112.653 kb on + strand, within EX28DRAFT_3903at 112.701 kb on + strand, within EX28DRAFT_3903at 112.731 kb on - strand, within EX28DRAFT_3903at 112.756 kb on - strand, within EX28DRAFT_3903at 112.756 kb on - strand, within EX28DRAFT_3903at 113.067 kb on + strand, within EX28DRAFT_3903at 113.067 kb on + strand, within EX28DRAFT_3903at 113.068 kb on - strand, within EX28DRAFT_3903at 113.354 kb on - strand, within EX28DRAFT_3903at 113.853 kb on - strandat 113.873 kb on - strandat 113.873 kb on - strandat 113.873 kb on - strandat 113.876 kb on + strandat 113.876 kb on + strandat 113.876 kb on + strandat 113.877 kb on - strandat 113.877 kb on - strandat 113.877 kb on - strandat 113.905 kb on + strandat 113.917 kb on - strandat 113.925 kb on + strandat 113.925 kb on + strandat 113.925 kb on + strandat 113.926 kb on - strandat 113.979 kb on + strandat 113.980 kb on - strandat 113.980 kb on - strandat 114.019 kb on - strandat 114.138 kb on - strand, within EX28DRAFT_3904at 114.171 kb on - strand, within EX28DRAFT_3904at 114.242 kb on + strand, within EX28DRAFT_3904at 114.243 kb on - strand, within EX28DRAFT_3904at 114.336 kb on - strand, within EX28DRAFT_3904at 114.518 kb on + strand, within EX28DRAFT_3904at 114.538 kb on + strand, within EX28DRAFT_3904at 114.693 kb on - strand, within EX28DRAFT_3904at 114.776 kb on - strand, within EX28DRAFT_3904

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media no stress control
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111,583 - EX28DRAFT_3902 0.47 +0.7
111,583 - EX28DRAFT_3902 0.47 -0.9
111,583 - EX28DRAFT_3902 0.47 +0.5
112,026 + EX28DRAFT_3902 0.84 -0.4
112,026 + EX28DRAFT_3902 0.84 +0.2
112,026 + EX28DRAFT_3902 0.84 +0.2
112,027 - EX28DRAFT_3902 0.84 +0.1
112,027 - EX28DRAFT_3902 0.84 -0.2
112,215 + -0.4
112,216 - +0.1
112,216 - -0.7
112,244 + +0.0
112,330 - -0.4
112,457 + +0.1
112,457 + +0.2
112,653 + EX28DRAFT_3903 0.15 +0.2
112,701 + EX28DRAFT_3903 0.19 +0.0
112,731 - EX28DRAFT_3903 0.21 +0.4
112,756 - EX28DRAFT_3903 0.23 -0.2
112,756 - EX28DRAFT_3903 0.23 -0.1
113,067 + EX28DRAFT_3903 0.45 +0.6
113,067 + EX28DRAFT_3903 0.45 +0.2
113,068 - EX28DRAFT_3903 0.45 -0.1
113,354 - EX28DRAFT_3903 0.66 +0.0
113,853 - -0.6
113,873 - -0.2
113,873 - -0.1
113,873 - +1.0
113,876 + +0.2
113,876 + +0.3
113,876 + +0.1
113,877 - -0.1
113,877 - -0.0
113,877 - -0.2
113,905 + +0.5
113,917 - +0.0
113,925 + +0.2
113,925 + -0.3
113,925 + -0.0
113,926 - +0.4
113,979 + +0.4
113,980 - +0.8
113,980 - -0.6
114,019 - -0.1
114,138 - EX28DRAFT_3904 0.11 +1.3
114,171 - EX28DRAFT_3904 0.13 +0.0
114,242 + EX28DRAFT_3904 0.17 -0.3
114,243 - EX28DRAFT_3904 0.17 +0.2
114,336 - EX28DRAFT_3904 0.23 +0.2
114,518 + EX28DRAFT_3904 0.33 +0.3
114,538 + EX28DRAFT_3904 0.34 +0.0
114,693 - EX28DRAFT_3904 0.43 -0.7
114,776 - EX28DRAFT_3904 0.48 +0.5

Or see this region's nucleotide sequence