Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3880

Experiment: MS_media no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3879 and EX28DRAFT_3880 are separated by 2 nucleotidesEX28DRAFT_3880 and EX28DRAFT_3881 are separated by 11 nucleotides EX28DRAFT_3879: EX28DRAFT_3879 - Glycosyltransferase, at 89,381 to 90,508 _3879 EX28DRAFT_3880: EX28DRAFT_3880 - Glycosyltransferase, at 90,511 to 91,611 _3880 EX28DRAFT_3881: EX28DRAFT_3881 - Glycosyltransferases involved in cell wall biogenesis, at 91,623 to 92,612 _3881 Position (kb) 90 91 92Strain fitness (log2 ratio) -3 -2 -1 0 1at 89.675 kb on + strand, within EX28DRAFT_3879at 89.676 kb on - strand, within EX28DRAFT_3879at 89.760 kb on - strand, within EX28DRAFT_3879at 89.805 kb on - strand, within EX28DRAFT_3879at 90.230 kb on + strand, within EX28DRAFT_3879at 90.231 kb on - strand, within EX28DRAFT_3879at 90.521 kb on + strandat 90.528 kb on + strandat 90.528 kb on + strandat 90.529 kb on - strandat 90.529 kb on - strandat 90.570 kb on + strandat 90.570 kb on + strandat 90.570 kb on + strandat 90.570 kb on + strandat 90.570 kb on + strandat 90.570 kb on + strandat 90.570 kb on + strandat 90.571 kb on - strandat 90.571 kb on - strandat 90.571 kb on - strandat 90.571 kb on - strandat 90.571 kb on - strandat 90.571 kb on - strandat 90.571 kb on - strandat 90.571 kb on - strandat 90.588 kb on - strandat 90.590 kb on + strandat 90.590 kb on + strandat 90.590 kb on + strandat 90.614 kb on + strandat 90.614 kb on + strandat 90.615 kb on - strandat 90.615 kb on - strandat 90.687 kb on + strand, within EX28DRAFT_3880at 90.687 kb on + strand, within EX28DRAFT_3880at 90.687 kb on + strand, within EX28DRAFT_3880at 90.688 kb on - strand, within EX28DRAFT_3880at 90.688 kb on - strand, within EX28DRAFT_3880at 90.688 kb on - strand, within EX28DRAFT_3880at 90.887 kb on - strand, within EX28DRAFT_3880at 90.921 kb on + strand, within EX28DRAFT_3880at 90.922 kb on - strand, within EX28DRAFT_3880at 90.930 kb on + strand, within EX28DRAFT_3880at 90.931 kb on - strand, within EX28DRAFT_3880at 90.943 kb on - strand, within EX28DRAFT_3880at 90.943 kb on - strand, within EX28DRAFT_3880at 90.943 kb on - strand, within EX28DRAFT_3880at 90.946 kb on + strand, within EX28DRAFT_3880at 91.042 kb on - strand, within EX28DRAFT_3880at 91.108 kb on + strand, within EX28DRAFT_3880at 91.108 kb on + strand, within EX28DRAFT_3880at 91.109 kb on - strand, within EX28DRAFT_3880at 91.113 kb on + strand, within EX28DRAFT_3880at 91.113 kb on + strand, within EX28DRAFT_3880at 91.114 kb on - strand, within EX28DRAFT_3880at 91.114 kb on - strand, within EX28DRAFT_3880at 91.114 kb on - strand, within EX28DRAFT_3880at 91.114 kb on - strand, within EX28DRAFT_3880at 91.160 kb on + strand, within EX28DRAFT_3880at 91.161 kb on - strand, within EX28DRAFT_3880at 91.161 kb on - strand, within EX28DRAFT_3880at 91.161 kb on - strand, within EX28DRAFT_3880at 91.334 kb on + strand, within EX28DRAFT_3880at 91.335 kb on - strand, within EX28DRAFT_3880at 91.340 kb on + strand, within EX28DRAFT_3880at 91.340 kb on + strand, within EX28DRAFT_3880at 91.340 kb on + strand, within EX28DRAFT_3880at 91.340 kb on + strand, within EX28DRAFT_3880at 91.341 kb on - strand, within EX28DRAFT_3880at 91.341 kb on - strand, within EX28DRAFT_3880at 91.341 kb on - strand, within EX28DRAFT_3880at 91.366 kb on - strand, within EX28DRAFT_3880at 91.386 kb on + strand, within EX28DRAFT_3880at 91.386 kb on + strand, within EX28DRAFT_3880at 91.411 kb on - strand, within EX28DRAFT_3880at 91.411 kb on - strand, within EX28DRAFT_3880at 91.475 kb on + strand, within EX28DRAFT_3880at 91.475 kb on + strand, within EX28DRAFT_3880at 91.475 kb on + strand, within EX28DRAFT_3880at 91.476 kb on - strand, within EX28DRAFT_3880at 91.476 kb on - strand, within EX28DRAFT_3880at 91.509 kb on + strandat 91.510 kb on - strandat 91.513 kb on + strandat 91.513 kb on + strandat 91.513 kb on + strandat 91.513 kb on + strandat 91.514 kb on - strandat 91.514 kb on - strandat 91.514 kb on - strandat 91.514 kb on - strandat 91.516 kb on - strandat 91.582 kb on + strandat 91.582 kb on + strandat 91.582 kb on + strandat 91.582 kb on + strandat 91.582 kb on + strandat 91.583 kb on - strandat 91.583 kb on - strandat 91.583 kb on - strandat 91.584 kb on + strandat 91.584 kb on + strandat 91.585 kb on - strandat 91.585 kb on - strandat 91.585 kb on - strandat 91.610 kb on - strandat 91.623 kb on - strandat 91.645 kb on + strandat 91.665 kb on + strandat 91.698 kb on - strandat 91.817 kb on + strand, within EX28DRAFT_3881at 91.819 kb on + strand, within EX28DRAFT_3881at 91.820 kb on - strand, within EX28DRAFT_3881at 91.884 kb on + strand, within EX28DRAFT_3881at 91.929 kb on + strand, within EX28DRAFT_3881at 91.930 kb on - strand, within EX28DRAFT_3881at 91.993 kb on - strand, within EX28DRAFT_3881at 92.105 kb on + strand, within EX28DRAFT_3881at 92.106 kb on - strand, within EX28DRAFT_3881at 92.106 kb on - strand, within EX28DRAFT_3881at 92.106 kb on - strand, within EX28DRAFT_3881at 92.106 kb on - strand, within EX28DRAFT_3881at 92.271 kb on + strand, within EX28DRAFT_3881at 92.298 kb on - strand, within EX28DRAFT_3881at 92.340 kb on + strand, within EX28DRAFT_3881at 92.340 kb on + strand, within EX28DRAFT_3881at 92.341 kb on - strand, within EX28DRAFT_3881at 92.395 kb on + strand, within EX28DRAFT_3881at 92.584 kb on - strandat 92.610 kb on + strandat 92.611 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media no stress control
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89,675 + EX28DRAFT_3879 0.26 -1.6
89,676 - EX28DRAFT_3879 0.26 -1.1
89,760 - EX28DRAFT_3879 0.34 -1.6
89,805 - EX28DRAFT_3879 0.38 -1.0
90,230 + EX28DRAFT_3879 0.75 -3.0
90,231 - EX28DRAFT_3879 0.75 -1.3
90,521 + -0.7
90,528 + -1.3
90,528 + -0.2
90,529 - -1.4
90,529 - -0.6
90,570 + -1.2
90,570 + -1.6
90,570 + -0.3
90,570 + -2.0
90,570 + -0.1
90,570 + -0.5
90,570 + -0.5
90,571 - -1.2
90,571 - -0.9
90,571 - -1.2
90,571 - -0.6
90,571 - -0.0
90,571 - -1.0
90,571 - +0.3
90,571 - -0.6
90,588 - +0.2
90,590 + -1.4
90,590 + -1.0
90,590 + -1.1
90,614 + -0.2
90,614 + -1.0
90,615 - -0.4
90,615 - -0.9
90,687 + EX28DRAFT_3880 0.16 -0.8
90,687 + EX28DRAFT_3880 0.16 -0.0
90,687 + EX28DRAFT_3880 0.16 -0.3
90,688 - EX28DRAFT_3880 0.16 -0.5
90,688 - EX28DRAFT_3880 0.16 -0.0
90,688 - EX28DRAFT_3880 0.16 -0.9
90,887 - EX28DRAFT_3880 0.34 -1.9
90,921 + EX28DRAFT_3880 0.37 -0.9
90,922 - EX28DRAFT_3880 0.37 -1.2
90,930 + EX28DRAFT_3880 0.38 -0.5
90,931 - EX28DRAFT_3880 0.38 -0.7
90,943 - EX28DRAFT_3880 0.39 -0.6
90,943 - EX28DRAFT_3880 0.39 -1.4
90,943 - EX28DRAFT_3880 0.39 -1.4
90,946 + EX28DRAFT_3880 0.40 +0.9
91,042 - EX28DRAFT_3880 0.48 -0.5
91,108 + EX28DRAFT_3880 0.54 -1.8
91,108 + EX28DRAFT_3880 0.54 -0.8
91,109 - EX28DRAFT_3880 0.54 -0.8
91,113 + EX28DRAFT_3880 0.55 -0.9
91,113 + EX28DRAFT_3880 0.55 -0.8
91,114 - EX28DRAFT_3880 0.55 -0.9
91,114 - EX28DRAFT_3880 0.55 +0.0
91,114 - EX28DRAFT_3880 0.55 -1.1
91,114 - EX28DRAFT_3880 0.55 +0.0
91,160 + EX28DRAFT_3880 0.59 -1.0
91,161 - EX28DRAFT_3880 0.59 +1.4
91,161 - EX28DRAFT_3880 0.59 -0.4
91,161 - EX28DRAFT_3880 0.59 -1.9
91,334 + EX28DRAFT_3880 0.75 -0.4
91,335 - EX28DRAFT_3880 0.75 -0.6
91,340 + EX28DRAFT_3880 0.75 -0.6
91,340 + EX28DRAFT_3880 0.75 -0.5
91,340 + EX28DRAFT_3880 0.75 -1.0
91,340 + EX28DRAFT_3880 0.75 -0.8
91,341 - EX28DRAFT_3880 0.75 -1.8
91,341 - EX28DRAFT_3880 0.75 -0.6
91,341 - EX28DRAFT_3880 0.75 -1.2
91,366 - EX28DRAFT_3880 0.78 -0.6
91,386 + EX28DRAFT_3880 0.79 -0.7
91,386 + EX28DRAFT_3880 0.79 -0.6
91,411 - EX28DRAFT_3880 0.82 -0.6
91,411 - EX28DRAFT_3880 0.82 -0.8
91,475 + EX28DRAFT_3880 0.88 -0.1
91,475 + EX28DRAFT_3880 0.88 -0.5
91,475 + EX28DRAFT_3880 0.88 -0.4
91,476 - EX28DRAFT_3880 0.88 -0.8
91,476 - EX28DRAFT_3880 0.88 +0.1
91,509 + -0.4
91,510 - -0.5
91,513 + -0.7
91,513 + -0.4
91,513 + -0.9
91,513 + -0.3
91,514 - -1.2
91,514 - -0.5
91,514 - -0.8
91,514 - -0.6
91,516 - -0.5
91,582 + +0.1
91,582 + -0.9
91,582 + -0.0
91,582 + -0.4
91,582 + -2.2
91,583 - -0.9
91,583 - -0.8
91,583 - -1.0
91,584 + +0.6
91,584 + -0.6
91,585 - +0.9
91,585 - -1.4
91,585 - +0.1
91,610 - +0.3
91,623 - +0.7
91,645 + +0.5
91,665 + -0.7
91,698 - -0.6
91,817 + EX28DRAFT_3881 0.20 +0.6
91,819 + EX28DRAFT_3881 0.20 +0.7
91,820 - EX28DRAFT_3881 0.20 -0.1
91,884 + EX28DRAFT_3881 0.26 -1.5
91,929 + EX28DRAFT_3881 0.31 -0.2
91,930 - EX28DRAFT_3881 0.31 +0.2
91,993 - EX28DRAFT_3881 0.37 +0.5
92,105 + EX28DRAFT_3881 0.49 -0.8
92,106 - EX28DRAFT_3881 0.49 +0.5
92,106 - EX28DRAFT_3881 0.49 -0.4
92,106 - EX28DRAFT_3881 0.49 +1.3
92,106 - EX28DRAFT_3881 0.49 -0.3
92,271 + EX28DRAFT_3881 0.65 -0.1
92,298 - EX28DRAFT_3881 0.68 -0.5
92,340 + EX28DRAFT_3881 0.72 -0.0
92,340 + EX28DRAFT_3881 0.72 -0.2
92,341 - EX28DRAFT_3881 0.73 -0.0
92,395 + EX28DRAFT_3881 0.78 +0.1
92,584 - -0.2
92,610 + -0.8
92,611 - -0.1

Or see this region's nucleotide sequence