Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3855

Experiment: MS_media no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3853 and EX28DRAFT_3854 overlap by 4 nucleotidesEX28DRAFT_3854 and EX28DRAFT_3855 overlap by 4 nucleotidesEX28DRAFT_3855 and EX28DRAFT_3856 are separated by 181 nucleotides EX28DRAFT_3853: EX28DRAFT_3853 - L-lactate transport, at 62,585 to 64,240 _3853 EX28DRAFT_3854: EX28DRAFT_3854 - Transcriptional regulators, at 64,237 to 65,010 _3854 EX28DRAFT_3855: EX28DRAFT_3855 - L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases, at 65,007 to 66,194 _3855 EX28DRAFT_3856: EX28DRAFT_3856 - Arabinose efflux permease, at 66,376 to 67,716 _3856 Position (kb) 65 66 67Strain fitness (log2 ratio) -1 0 1at 64.215 kb on - strandat 64.221 kb on + strandat 64.241 kb on + strandat 64.241 kb on + strandat 64.242 kb on - strandat 64.526 kb on - strand, within EX28DRAFT_3854at 64.792 kb on + strand, within EX28DRAFT_3854at 64.793 kb on - strand, within EX28DRAFT_3854at 64.959 kb on + strandat 64.959 kb on + strandat 64.987 kb on - strandat 65.012 kb on + strandat 65.012 kb on + strandat 65.012 kb on + strandat 65.012 kb on + strandat 65.076 kb on + strandat 65.076 kb on + strandat 65.076 kb on + strandat 65.168 kb on + strand, within EX28DRAFT_3855at 65.168 kb on + strand, within EX28DRAFT_3855at 65.245 kb on + strand, within EX28DRAFT_3855at 65.256 kb on + strand, within EX28DRAFT_3855at 65.257 kb on - strand, within EX28DRAFT_3855at 65.257 kb on - strand, within EX28DRAFT_3855at 65.315 kb on + strand, within EX28DRAFT_3855at 65.392 kb on - strand, within EX28DRAFT_3855at 65.415 kb on - strand, within EX28DRAFT_3855at 65.664 kb on + strand, within EX28DRAFT_3855at 65.665 kb on - strand, within EX28DRAFT_3855at 65.957 kb on + strand, within EX28DRAFT_3855at 65.958 kb on - strand, within EX28DRAFT_3855at 65.983 kb on + strand, within EX28DRAFT_3855at 65.984 kb on - strand, within EX28DRAFT_3855at 66.000 kb on + strand, within EX28DRAFT_3855at 66.001 kb on - strand, within EX28DRAFT_3855at 66.001 kb on - strand, within EX28DRAFT_3855at 66.120 kb on - strandat 66.142 kb on + strandat 66.274 kb on + strandat 66.323 kb on - strandat 66.323 kb on - strandat 66.375 kb on + strandat 66.376 kb on - strandat 66.382 kb on + strandat 66.508 kb on + strandat 66.829 kb on - strand, within EX28DRAFT_3856at 66.829 kb on - strand, within EX28DRAFT_3856at 66.829 kb on - strand, within EX28DRAFT_3856at 66.835 kb on + strand, within EX28DRAFT_3856at 66.835 kb on + strand, within EX28DRAFT_3856at 66.835 kb on + strand, within EX28DRAFT_3856at 66.835 kb on + strand, within EX28DRAFT_3856at 66.889 kb on - strand, within EX28DRAFT_3856at 66.947 kb on + strand, within EX28DRAFT_3856at 67.175 kb on - strand, within EX28DRAFT_3856at 67.180 kb on - strand, within EX28DRAFT_3856

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media no stress control
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64,215 - +1.6
64,221 + +0.4
64,241 + -0.3
64,241 + +0.2
64,242 - -0.1
64,526 - EX28DRAFT_3854 0.37 -0.2
64,792 + EX28DRAFT_3854 0.72 -0.7
64,793 - EX28DRAFT_3854 0.72 +0.3
64,959 + -0.3
64,959 + +0.1
64,987 - +0.6
65,012 + -0.0
65,012 + -0.2
65,012 + +0.9
65,012 + +0.1
65,076 + +0.2
65,076 + -0.2
65,076 + +0.3
65,168 + EX28DRAFT_3855 0.14 -0.1
65,168 + EX28DRAFT_3855 0.14 -0.1
65,245 + EX28DRAFT_3855 0.20 -0.2
65,256 + EX28DRAFT_3855 0.21 +0.0
65,257 - EX28DRAFT_3855 0.21 -0.5
65,257 - EX28DRAFT_3855 0.21 +0.6
65,315 + EX28DRAFT_3855 0.26 +0.6
65,392 - EX28DRAFT_3855 0.32 -0.1
65,415 - EX28DRAFT_3855 0.34 -0.1
65,664 + EX28DRAFT_3855 0.55 +0.3
65,665 - EX28DRAFT_3855 0.55 -0.5
65,957 + EX28DRAFT_3855 0.80 -0.1
65,958 - EX28DRAFT_3855 0.80 -0.6
65,983 + EX28DRAFT_3855 0.82 -1.2
65,984 - EX28DRAFT_3855 0.82 +0.4
66,000 + EX28DRAFT_3855 0.84 -0.2
66,001 - EX28DRAFT_3855 0.84 -0.3
66,001 - EX28DRAFT_3855 0.84 -0.2
66,120 - -0.3
66,142 + +0.3
66,274 + +0.0
66,323 - -0.1
66,323 - +0.0
66,375 + +0.0
66,376 - +0.2
66,382 + +0.2
66,508 + +0.1
66,829 - EX28DRAFT_3856 0.34 +0.1
66,829 - EX28DRAFT_3856 0.34 +0.0
66,829 - EX28DRAFT_3856 0.34 -0.1
66,835 + EX28DRAFT_3856 0.34 -0.3
66,835 + EX28DRAFT_3856 0.34 +0.2
66,835 + EX28DRAFT_3856 0.34 +0.6
66,835 + EX28DRAFT_3856 0.34 +0.2
66,889 - EX28DRAFT_3856 0.38 +0.8
66,947 + EX28DRAFT_3856 0.43 +0.1
67,175 - EX28DRAFT_3856 0.60 +0.3
67,180 - EX28DRAFT_3856 0.60 +0.3

Or see this region's nucleotide sequence