Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3847

Experiment: MS_media no stress control

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX28DRAFT_3845 and EX28DRAFT_3846 are separated by 103 nucleotidesEX28DRAFT_3846 and EX28DRAFT_3847 are separated by 90 nucleotidesEX28DRAFT_3847 and EX28DRAFT_3848 are separated by 2 nucleotides EX28DRAFT_3845: EX28DRAFT_3845 - L-seryl-tRNA(Sec) selenium transferase (EC 2.9.1.1), at 53,741 to 55,126 _3845 EX28DRAFT_3846: EX28DRAFT_3846 - Glutathione S-transferase, at 55,230 to 55,838 _3846 EX28DRAFT_3847: EX28DRAFT_3847 - Multidrug resistance efflux pump, at 55,929 to 57,065 _3847 EX28DRAFT_3848: EX28DRAFT_3848 - Protein of unknown function (DUF3302), at 57,068 to 57,424 _3848 Position (kb) 55 56 57 58Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 55.010 kb on + strandat 55.104 kb on + strandat 55.105 kb on - strandat 55.143 kb on + strandat 55.147 kb on + strandat 55.147 kb on + strandat 55.197 kb on - strandat 55.220 kb on - strandat 55.220 kb on - strandat 55.221 kb on + strandat 55.633 kb on + strand, within EX28DRAFT_3846at 55.633 kb on + strand, within EX28DRAFT_3846at 55.633 kb on + strand, within EX28DRAFT_3846at 55.634 kb on - strand, within EX28DRAFT_3846at 55.634 kb on - strand, within EX28DRAFT_3846at 55.663 kb on + strand, within EX28DRAFT_3846at 55.712 kb on - strand, within EX28DRAFT_3846at 55.739 kb on - strand, within EX28DRAFT_3846at 55.819 kb on + strandat 55.819 kb on + strandat 55.899 kb on + strandat 55.899 kb on + strandat 55.899 kb on + strandat 55.899 kb on + strandat 55.900 kb on - strandat 55.930 kb on + strandat 55.942 kb on + strandat 55.948 kb on + strandat 55.949 kb on - strandat 55.949 kb on - strandat 55.978 kb on - strandat 55.982 kb on + strandat 56.017 kb on + strandat 56.035 kb on + strandat 56.035 kb on + strandat 56.036 kb on - strandat 56.036 kb on - strandat 56.036 kb on - strandat 56.036 kb on - strandat 56.036 kb on - strandat 56.036 kb on - strandat 56.039 kb on + strandat 56.310 kb on - strand, within EX28DRAFT_3847at 56.348 kb on - strand, within EX28DRAFT_3847at 56.380 kb on + strand, within EX28DRAFT_3847at 56.380 kb on + strand, within EX28DRAFT_3847at 56.380 kb on + strand, within EX28DRAFT_3847at 56.381 kb on - strand, within EX28DRAFT_3847at 56.422 kb on + strand, within EX28DRAFT_3847at 56.483 kb on + strand, within EX28DRAFT_3847at 56.483 kb on + strand, within EX28DRAFT_3847at 56.484 kb on - strand, within EX28DRAFT_3847at 56.484 kb on - strand, within EX28DRAFT_3847at 56.533 kb on - strand, within EX28DRAFT_3847at 56.554 kb on + strand, within EX28DRAFT_3847at 56.554 kb on + strand, within EX28DRAFT_3847at 56.555 kb on - strand, within EX28DRAFT_3847at 56.599 kb on - strand, within EX28DRAFT_3847at 56.632 kb on + strand, within EX28DRAFT_3847at 56.633 kb on - strand, within EX28DRAFT_3847at 56.640 kb on - strand, within EX28DRAFT_3847at 56.641 kb on + strand, within EX28DRAFT_3847at 56.642 kb on - strand, within EX28DRAFT_3847at 56.793 kb on + strand, within EX28DRAFT_3847at 56.814 kb on - strand, within EX28DRAFT_3847at 56.828 kb on + strand, within EX28DRAFT_3847at 56.879 kb on - strand, within EX28DRAFT_3847at 56.920 kb on + strand, within EX28DRAFT_3847at 56.920 kb on + strand, within EX28DRAFT_3847at 56.921 kb on - strand, within EX28DRAFT_3847at 57.040 kb on + strandat 57.040 kb on + strandat 57.125 kb on + strand, within EX28DRAFT_3848at 57.219 kb on + strand, within EX28DRAFT_3848at 57.275 kb on - strand, within EX28DRAFT_3848at 57.334 kb on + strand, within EX28DRAFT_3848at 57.336 kb on + strand, within EX28DRAFT_3848at 57.602 kb on - strandat 57.616 kb on + strandat 57.625 kb on - strandat 57.756 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MS_media no stress control
remove
55,010 + -0.0
55,104 + +0.3
55,105 - +0.5
55,143 + -0.2
55,147 + -0.3
55,147 + -0.3
55,197 - -0.0
55,220 - +0.3
55,220 - +0.7
55,221 + -0.1
55,633 + EX28DRAFT_3846 0.66 -0.2
55,633 + EX28DRAFT_3846 0.66 +0.2
55,633 + EX28DRAFT_3846 0.66 -0.9
55,634 - EX28DRAFT_3846 0.66 -0.4
55,634 - EX28DRAFT_3846 0.66 -0.5
55,663 + EX28DRAFT_3846 0.71 +0.5
55,712 - EX28DRAFT_3846 0.79 +0.2
55,739 - EX28DRAFT_3846 0.84 -0.2
55,819 + +0.6
55,819 + -0.3
55,899 + -0.3
55,899 + -0.2
55,899 + +0.4
55,899 + +1.0
55,900 - -0.9
55,930 + -0.1
55,942 + -0.3
55,948 + -0.2
55,949 - +0.7
55,949 - +0.0
55,978 - +0.6
55,982 + +0.4
56,017 + +0.0
56,035 + -2.0
56,035 + -0.1
56,036 - +0.9
56,036 - +0.5
56,036 - +0.3
56,036 - +0.1
56,036 - +0.7
56,036 - -0.3
56,039 + +4.2
56,310 - EX28DRAFT_3847 0.34 +0.1
56,348 - EX28DRAFT_3847 0.37 +1.1
56,380 + EX28DRAFT_3847 0.40 +0.0
56,380 + EX28DRAFT_3847 0.40 -1.3
56,380 + EX28DRAFT_3847 0.40 +0.3
56,381 - EX28DRAFT_3847 0.40 +0.1
56,422 + EX28DRAFT_3847 0.43 -0.1
56,483 + EX28DRAFT_3847 0.49 -0.3
56,483 + EX28DRAFT_3847 0.49 +0.8
56,484 - EX28DRAFT_3847 0.49 -0.3
56,484 - EX28DRAFT_3847 0.49 -0.7
56,533 - EX28DRAFT_3847 0.53 +0.2
56,554 + EX28DRAFT_3847 0.55 +0.8
56,554 + EX28DRAFT_3847 0.55 -0.1
56,555 - EX28DRAFT_3847 0.55 -0.0
56,599 - EX28DRAFT_3847 0.59 -0.4
56,632 + EX28DRAFT_3847 0.62 +1.4
56,633 - EX28DRAFT_3847 0.62 +0.2
56,640 - EX28DRAFT_3847 0.63 +0.2
56,641 + EX28DRAFT_3847 0.63 -0.1
56,642 - EX28DRAFT_3847 0.63 -0.0
56,793 + EX28DRAFT_3847 0.76 -0.1
56,814 - EX28DRAFT_3847 0.78 -0.3
56,828 + EX28DRAFT_3847 0.79 +0.0
56,879 - EX28DRAFT_3847 0.84 +1.4
56,920 + EX28DRAFT_3847 0.87 +0.5
56,920 + EX28DRAFT_3847 0.87 -0.6
56,921 - EX28DRAFT_3847 0.87 +0.8
57,040 + -2.3
57,040 + -0.5
57,125 + EX28DRAFT_3848 0.16 -0.6
57,219 + EX28DRAFT_3848 0.42 +0.2
57,275 - EX28DRAFT_3848 0.58 +0.1
57,334 + EX28DRAFT_3848 0.75 -0.1
57,336 + EX28DRAFT_3848 0.75 +0.1
57,602 - -0.0
57,616 + +0.5
57,625 - -0.4
57,756 + +0.5

Or see this region's nucleotide sequence