Experiment: MS_media no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3815 and EX28DRAFT_3816 are separated by 128 nucleotides EX28DRAFT_3816 and EX28DRAFT_3817 are separated by 26 nucleotides
EX28DRAFT_3815: EX28DRAFT_3815 - Sugar kinases, ribokinase family, at 19,521 to 20,459
_3815
EX28DRAFT_3816: EX28DRAFT_3816 - Sugar phosphate permease, at 20,588 to 21,868
_3816
EX28DRAFT_3817: EX28DRAFT_3817 - Lactate dehydrogenase and related dehydrogenases, at 21,895 to 22,869
_3817
Position (kb) 20
21
22 Strain fitness (log2 ratio) -2
-1
0
1 at 19.613 kb on + strand at 19.749 kb on - strand, within EX28DRAFT_3815 at 19.802 kb on + strand, within EX28DRAFT_3815 at 19.802 kb on + strand, within EX28DRAFT_3815 at 19.802 kb on + strand, within EX28DRAFT_3815 at 19.962 kb on + strand, within EX28DRAFT_3815 at 19.963 kb on - strand, within EX28DRAFT_3815 at 20.175 kb on + strand, within EX28DRAFT_3815 at 20.191 kb on + strand, within EX28DRAFT_3815 at 20.200 kb on + strand, within EX28DRAFT_3815 at 20.475 kb on + strand at 20.509 kb on + strand at 20.510 kb on - strand at 20.610 kb on + strand at 20.651 kb on + strand at 20.651 kb on + strand at 20.802 kb on - strand, within EX28DRAFT_3816 at 20.820 kb on + strand, within EX28DRAFT_3816 at 20.825 kb on - strand, within EX28DRAFT_3816 at 20.825 kb on - strand, within EX28DRAFT_3816 at 20.825 kb on - strand, within EX28DRAFT_3816 at 20.891 kb on - strand, within EX28DRAFT_3816 at 20.891 kb on - strand, within EX28DRAFT_3816 at 20.963 kb on + strand, within EX28DRAFT_3816 at 20.963 kb on + strand, within EX28DRAFT_3816 at 20.964 kb on - strand, within EX28DRAFT_3816 at 20.964 kb on - strand, within EX28DRAFT_3816 at 20.981 kb on - strand, within EX28DRAFT_3816 at 21.007 kb on + strand, within EX28DRAFT_3816 at 21.258 kb on - strand, within EX28DRAFT_3816 at 21.306 kb on - strand, within EX28DRAFT_3816 at 21.306 kb on - strand, within EX28DRAFT_3816 at 21.310 kb on + strand, within EX28DRAFT_3816 at 21.390 kb on + strand, within EX28DRAFT_3816 at 21.420 kb on - strand, within EX28DRAFT_3816 at 21.569 kb on + strand, within EX28DRAFT_3816 at 21.569 kb on + strand, within EX28DRAFT_3816 at 21.569 kb on + strand, within EX28DRAFT_3816 at 21.569 kb on + strand, within EX28DRAFT_3816 at 21.570 kb on - strand, within EX28DRAFT_3816 at 21.571 kb on + strand, within EX28DRAFT_3816 at 21.571 kb on + strand, within EX28DRAFT_3816 at 21.572 kb on - strand, within EX28DRAFT_3816 at 21.572 kb on - strand, within EX28DRAFT_3816 at 21.572 kb on - strand, within EX28DRAFT_3816 at 21.602 kb on + strand, within EX28DRAFT_3816 at 21.602 kb on + strand, within EX28DRAFT_3816 at 21.602 kb on + strand, within EX28DRAFT_3816 at 21.602 kb on + strand, within EX28DRAFT_3816 at 21.602 kb on + strand, within EX28DRAFT_3816 at 21.602 kb on + strand, within EX28DRAFT_3816 at 21.602 kb on + strand, within EX28DRAFT_3816 at 21.603 kb on - strand, within EX28DRAFT_3816 at 21.603 kb on - strand, within EX28DRAFT_3816 at 21.688 kb on + strand, within EX28DRAFT_3816 at 21.767 kb on + strand at 21.767 kb on + strand at 21.767 kb on + strand at 21.767 kb on + strand at 21.916 kb on + strand at 22.101 kb on + strand, within EX28DRAFT_3817 at 22.124 kb on - strand, within EX28DRAFT_3817 at 22.176 kb on + strand, within EX28DRAFT_3817 at 22.176 kb on + strand, within EX28DRAFT_3817 at 22.226 kb on + strand, within EX28DRAFT_3817 at 22.398 kb on + strand, within EX28DRAFT_3817 at 22.838 kb on + strand at 22.839 kb on - strand at 22.868 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media no stress control remove 19,613 + +0.3 19,749 - EX28DRAFT_3815 0.24 +0.4 19,802 + EX28DRAFT_3815 0.30 -0.6 19,802 + EX28DRAFT_3815 0.30 +0.5 19,802 + EX28DRAFT_3815 0.30 -0.2 19,962 + EX28DRAFT_3815 0.47 +0.1 19,963 - EX28DRAFT_3815 0.47 +0.9 20,175 + EX28DRAFT_3815 0.70 +0.8 20,191 + EX28DRAFT_3815 0.71 -0.5 20,200 + EX28DRAFT_3815 0.72 +0.3 20,475 + -0.3 20,509 + +0.9 20,510 - +0.3 20,610 + +0.3 20,651 + -0.6 20,651 + -0.4 20,802 - EX28DRAFT_3816 0.17 -0.8 20,820 + EX28DRAFT_3816 0.18 -0.2 20,825 - EX28DRAFT_3816 0.19 +0.7 20,825 - EX28DRAFT_3816 0.19 +0.5 20,825 - EX28DRAFT_3816 0.19 +0.8 20,891 - EX28DRAFT_3816 0.24 +0.2 20,891 - EX28DRAFT_3816 0.24 +0.4 20,963 + EX28DRAFT_3816 0.29 -0.1 20,963 + EX28DRAFT_3816 0.29 -0.1 20,964 - EX28DRAFT_3816 0.29 +0.3 20,964 - EX28DRAFT_3816 0.29 -0.0 20,981 - EX28DRAFT_3816 0.31 +1.1 21,007 + EX28DRAFT_3816 0.33 -0.2 21,258 - EX28DRAFT_3816 0.52 +1.6 21,306 - EX28DRAFT_3816 0.56 +0.3 21,306 - EX28DRAFT_3816 0.56 -0.0 21,310 + EX28DRAFT_3816 0.56 -0.2 21,390 + EX28DRAFT_3816 0.63 +0.7 21,420 - EX28DRAFT_3816 0.65 -0.2 21,569 + EX28DRAFT_3816 0.77 -0.3 21,569 + EX28DRAFT_3816 0.77 +0.0 21,569 + EX28DRAFT_3816 0.77 -2.2 21,569 + EX28DRAFT_3816 0.77 +0.8 21,570 - EX28DRAFT_3816 0.77 +1.2 21,571 + EX28DRAFT_3816 0.77 -0.4 21,571 + EX28DRAFT_3816 0.77 -0.3 21,572 - EX28DRAFT_3816 0.77 -0.1 21,572 - EX28DRAFT_3816 0.77 +0.1 21,572 - EX28DRAFT_3816 0.77 -0.3 21,602 + EX28DRAFT_3816 0.79 +0.2 21,602 + EX28DRAFT_3816 0.79 +0.1 21,602 + EX28DRAFT_3816 0.79 +0.6 21,602 + EX28DRAFT_3816 0.79 -1.2 21,602 + EX28DRAFT_3816 0.79 +0.1 21,602 + EX28DRAFT_3816 0.79 +0.7 21,602 + EX28DRAFT_3816 0.79 -0.9 21,603 - EX28DRAFT_3816 0.79 +1.0 21,603 - EX28DRAFT_3816 0.79 -0.1 21,688 + EX28DRAFT_3816 0.86 -0.1 21,767 + -0.1 21,767 + +0.2 21,767 + -0.1 21,767 + -1.2 21,916 + +0.1 22,101 + EX28DRAFT_3817 0.21 -1.5 22,124 - EX28DRAFT_3817 0.23 +0.2 22,176 + EX28DRAFT_3817 0.29 +0.3 22,176 + EX28DRAFT_3817 0.29 +0.3 22,226 + EX28DRAFT_3817 0.34 -0.2 22,398 + EX28DRAFT_3817 0.52 +0.0 22,838 + +0.1 22,839 - +0.1 22,868 - -0.6
Or see this region's nucleotide sequence