Experiment: MS_media no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3591 and EX28DRAFT_3592 are separated by 52 nucleotides EX28DRAFT_3592 and EX28DRAFT_3593 are separated by 89 nucleotides EX28DRAFT_3593 and EX28DRAFT_3594 are separated by 61 nucleotides
EX28DRAFT_3591: EX28DRAFT_3591 - thymidine phosphorylase (EC 2.4.2.4), at 248,191 to 249,513
_3591
EX28DRAFT_3592: EX28DRAFT_3592 - phosphopentomutase, at 249,566 to 250,789
_3592
EX28DRAFT_3593: EX28DRAFT_3593 - purine-nucleoside phosphorylase, family 1 (deoD), at 250,879 to 251,601
_3593
EX28DRAFT_3594: EX28DRAFT_3594 - lipoyltransferase and lipoate-protein ligase, at 251,663 to 252,679
_3594
Position (kb) 249
250
251 Strain fitness (log2 ratio) -1
0
1 at 248.625 kb on + strand, within EX28DRAFT_3591 at 248.692 kb on + strand, within EX28DRAFT_3591 at 248.831 kb on - strand, within EX28DRAFT_3591 at 248.970 kb on - strand, within EX28DRAFT_3591 at 249.041 kb on + strand, within EX28DRAFT_3591 at 249.041 kb on + strand, within EX28DRAFT_3591 at 249.042 kb on - strand, within EX28DRAFT_3591 at 249.042 kb on - strand, within EX28DRAFT_3591 at 249.187 kb on + strand, within EX28DRAFT_3591 at 249.187 kb on + strand, within EX28DRAFT_3591 at 249.325 kb on + strand, within EX28DRAFT_3591 at 249.326 kb on - strand, within EX28DRAFT_3591 at 249.511 kb on + strand at 249.517 kb on + strand at 249.519 kb on + strand at 249.520 kb on - strand at 249.565 kb on + strand at 249.580 kb on + strand at 249.580 kb on + strand at 249.581 kb on - strand at 249.911 kb on + strand, within EX28DRAFT_3592 at 249.912 kb on - strand, within EX28DRAFT_3592 at 250.355 kb on + strand, within EX28DRAFT_3592 at 250.355 kb on + strand, within EX28DRAFT_3592 at 250.355 kb on + strand, within EX28DRAFT_3592 at 250.355 kb on + strand, within EX28DRAFT_3592 at 250.355 kb on + strand, within EX28DRAFT_3592 at 250.356 kb on - strand, within EX28DRAFT_3592 at 250.356 kb on - strand, within EX28DRAFT_3592 at 250.517 kb on + strand, within EX28DRAFT_3592 at 250.745 kb on + strand at 250.754 kb on - strand at 250.788 kb on - strand at 250.856 kb on - strand at 250.864 kb on + strand at 250.864 kb on + strand at 250.865 kb on - strand at 250.897 kb on - strand at 250.897 kb on - strand at 251.035 kb on + strand, within EX28DRAFT_3593 at 251.036 kb on - strand, within EX28DRAFT_3593 at 251.091 kb on + strand, within EX28DRAFT_3593 at 251.091 kb on + strand, within EX28DRAFT_3593 at 251.091 kb on + strand, within EX28DRAFT_3593 at 251.092 kb on - strand, within EX28DRAFT_3593 at 251.092 kb on - strand, within EX28DRAFT_3593 at 251.092 kb on - strand, within EX28DRAFT_3593 at 251.095 kb on + strand, within EX28DRAFT_3593 at 251.096 kb on - strand, within EX28DRAFT_3593 at 251.096 kb on - strand, within EX28DRAFT_3593 at 251.241 kb on + strand, within EX28DRAFT_3593 at 251.242 kb on - strand, within EX28DRAFT_3593 at 251.359 kb on + strand, within EX28DRAFT_3593 at 251.360 kb on - strand, within EX28DRAFT_3593 at 251.441 kb on - strand, within EX28DRAFT_3593 at 251.441 kb on - strand, within EX28DRAFT_3593 at 251.506 kb on - strand, within EX28DRAFT_3593 at 251.599 kb on + strand at 251.600 kb on - strand at 251.762 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media no stress control remove 248,625 + EX28DRAFT_3591 0.33 -0.5 248,692 + EX28DRAFT_3591 0.38 -0.8 248,831 - EX28DRAFT_3591 0.48 +0.1 248,970 - EX28DRAFT_3591 0.59 +0.2 249,041 + EX28DRAFT_3591 0.64 +0.0 249,041 + EX28DRAFT_3591 0.64 +0.3 249,042 - EX28DRAFT_3591 0.64 -0.6 249,042 - EX28DRAFT_3591 0.64 +0.0 249,187 + EX28DRAFT_3591 0.75 +0.5 249,187 + EX28DRAFT_3591 0.75 +0.4 249,325 + EX28DRAFT_3591 0.86 +0.2 249,326 - EX28DRAFT_3591 0.86 +0.1 249,511 + +0.1 249,517 + -0.1 249,519 + -0.6 249,520 - -0.5 249,565 + +0.1 249,580 + +0.0 249,580 + -0.1 249,581 - +0.7 249,911 + EX28DRAFT_3592 0.28 +0.1 249,912 - EX28DRAFT_3592 0.28 -0.1 250,355 + EX28DRAFT_3592 0.64 -0.8 250,355 + EX28DRAFT_3592 0.64 +0.4 250,355 + EX28DRAFT_3592 0.64 -0.5 250,355 + EX28DRAFT_3592 0.64 -0.8 250,355 + EX28DRAFT_3592 0.64 -0.7 250,356 - EX28DRAFT_3592 0.65 +0.1 250,356 - EX28DRAFT_3592 0.65 -1.0 250,517 + EX28DRAFT_3592 0.78 +0.3 250,745 + -0.4 250,754 - -0.4 250,788 - -0.2 250,856 - -0.2 250,864 + +0.0 250,864 + -0.0 250,865 - +0.4 250,897 - +0.3 250,897 - +0.2 251,035 + EX28DRAFT_3593 0.22 -0.8 251,036 - EX28DRAFT_3593 0.22 -0.0 251,091 + EX28DRAFT_3593 0.29 -0.9 251,091 + EX28DRAFT_3593 0.29 -1.0 251,091 + EX28DRAFT_3593 0.29 -1.1 251,092 - EX28DRAFT_3593 0.29 +0.5 251,092 - EX28DRAFT_3593 0.29 -0.1 251,092 - EX28DRAFT_3593 0.29 +0.0 251,095 + EX28DRAFT_3593 0.30 -0.0 251,096 - EX28DRAFT_3593 0.30 -0.3 251,096 - EX28DRAFT_3593 0.30 -0.6 251,241 + EX28DRAFT_3593 0.50 +0.2 251,242 - EX28DRAFT_3593 0.50 -0.1 251,359 + EX28DRAFT_3593 0.66 +0.1 251,360 - EX28DRAFT_3593 0.67 -1.1 251,441 - EX28DRAFT_3593 0.78 -0.3 251,441 - EX28DRAFT_3593 0.78 -0.5 251,506 - EX28DRAFT_3593 0.87 -0.0 251,599 + +0.4 251,600 - -0.5 251,762 - -0.6
Or see this region's nucleotide sequence