Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3559

Experiment: MS_media no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3557 and EX28DRAFT_3558 overlap by 4 nucleotidesEX28DRAFT_3558 and EX28DRAFT_3559 are separated by 180 nucleotidesEX28DRAFT_3559 and EX28DRAFT_3560 are separated by 270 nucleotidesEX28DRAFT_3560 and EX28DRAFT_3561 are separated by 80 nucleotides EX28DRAFT_3557: EX28DRAFT_3557 - Bacterial regulatory proteins, luxR family, at 221,164 to 221,706 _3557 EX28DRAFT_3558: EX28DRAFT_3558 - EAL domain, at 221,703 to 222,341 _3558 EX28DRAFT_3559: EX28DRAFT_3559 - Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily, at 222,522 to 224,813 _3559 EX28DRAFT_3560: EX28DRAFT_3560 - Protein of unknown function (DUF2501), at 225,084 to 225,569 _3560 EX28DRAFT_3561: EX28DRAFT_3561 - DNA replication protein, at 225,650 to 226,387 _3561 Position (kb) 222 223 224 225Strain fitness (log2 ratio) -3 -2 -1 0 1at 221.588 kb on + strand, within EX28DRAFT_3557at 221.588 kb on + strand, within EX28DRAFT_3557at 221.588 kb on + strand, within EX28DRAFT_3557at 221.588 kb on + strand, within EX28DRAFT_3557at 221.589 kb on - strand, within EX28DRAFT_3557at 221.652 kb on + strandat 221.652 kb on + strandat 221.653 kb on - strandat 221.873 kb on + strand, within EX28DRAFT_3558at 221.873 kb on + strand, within EX28DRAFT_3558at 221.873 kb on + strand, within EX28DRAFT_3558at 221.874 kb on - strand, within EX28DRAFT_3558at 221.958 kb on + strand, within EX28DRAFT_3558at 221.958 kb on + strand, within EX28DRAFT_3558at 221.958 kb on + strand, within EX28DRAFT_3558at 221.959 kb on - strand, within EX28DRAFT_3558at 221.964 kb on + strand, within EX28DRAFT_3558at 222.039 kb on - strand, within EX28DRAFT_3558at 222.039 kb on - strand, within EX28DRAFT_3558at 222.123 kb on + strand, within EX28DRAFT_3558at 222.145 kb on + strand, within EX28DRAFT_3558at 222.148 kb on + strand, within EX28DRAFT_3558at 222.148 kb on + strand, within EX28DRAFT_3558at 222.148 kb on + strand, within EX28DRAFT_3558at 222.148 kb on + strand, within EX28DRAFT_3558at 222.148 kb on + strand, within EX28DRAFT_3558at 222.148 kb on + strand, within EX28DRAFT_3558at 222.149 kb on - strand, within EX28DRAFT_3558at 222.149 kb on - strand, within EX28DRAFT_3558at 222.149 kb on - strand, within EX28DRAFT_3558at 222.149 kb on - strand, within EX28DRAFT_3558at 222.149 kb on - strand, within EX28DRAFT_3558at 222.149 kb on - strand, within EX28DRAFT_3558at 222.149 kb on - strand, within EX28DRAFT_3558at 222.149 kb on - strand, within EX28DRAFT_3558at 222.149 kb on - strand, within EX28DRAFT_3558at 222.207 kb on - strand, within EX28DRAFT_3558at 222.236 kb on - strand, within EX28DRAFT_3558at 222.273 kb on + strand, within EX28DRAFT_3558at 222.273 kb on + strand, within EX28DRAFT_3558at 222.273 kb on + strand, within EX28DRAFT_3558at 222.273 kb on + strand, within EX28DRAFT_3558at 222.327 kb on - strandat 222.327 kb on - strandat 222.327 kb on - strandat 222.336 kb on + strandat 222.337 kb on - strandat 222.337 kb on - strandat 222.337 kb on - strandat 222.337 kb on - strandat 222.641 kb on + strandat 222.812 kb on - strand, within EX28DRAFT_3559at 222.992 kb on - strand, within EX28DRAFT_3559at 223.222 kb on + strand, within EX28DRAFT_3559at 223.409 kb on + strand, within EX28DRAFT_3559at 223.534 kb on - strand, within EX28DRAFT_3559at 223.715 kb on + strand, within EX28DRAFT_3559at 223.903 kb on + strand, within EX28DRAFT_3559at 223.904 kb on - strand, within EX28DRAFT_3559at 223.904 kb on - strand, within EX28DRAFT_3559at 223.920 kb on - strand, within EX28DRAFT_3559at 223.924 kb on + strand, within EX28DRAFT_3559at 223.966 kb on + strand, within EX28DRAFT_3559at 223.967 kb on - strand, within EX28DRAFT_3559at 224.084 kb on + strand, within EX28DRAFT_3559at 224.084 kb on + strand, within EX28DRAFT_3559at 224.085 kb on - strand, within EX28DRAFT_3559at 224.183 kb on + strand, within EX28DRAFT_3559at 224.184 kb on - strand, within EX28DRAFT_3559at 224.311 kb on + strand, within EX28DRAFT_3559at 224.312 kb on - strand, within EX28DRAFT_3559at 224.317 kb on + strand, within EX28DRAFT_3559at 224.318 kb on - strand, within EX28DRAFT_3559at 224.365 kb on + strand, within EX28DRAFT_3559at 224.365 kb on + strand, within EX28DRAFT_3559at 224.365 kb on + strand, within EX28DRAFT_3559at 224.365 kb on + strand, within EX28DRAFT_3559at 224.365 kb on + strand, within EX28DRAFT_3559at 224.368 kb on + strand, within EX28DRAFT_3559at 224.368 kb on + strand, within EX28DRAFT_3559at 224.369 kb on - strand, within EX28DRAFT_3559at 224.484 kb on - strand, within EX28DRAFT_3559at 224.587 kb on + strandat 224.588 kb on - strandat 224.588 kb on - strandat 224.588 kb on - strandat 224.588 kb on - strandat 224.649 kb on - strandat 224.666 kb on - strandat 224.685 kb on - strandat 224.819 kb on + strandat 224.819 kb on + strandat 224.871 kb on + strandat 224.872 kb on - strandat 224.872 kb on - strandat 224.872 kb on - strandat 224.878 kb on + strandat 224.879 kb on - strandat 224.879 kb on - strandat 225.227 kb on + strand, within EX28DRAFT_3560at 225.228 kb on - strand, within EX28DRAFT_3560at 225.228 kb on - strand, within EX28DRAFT_3560at 225.229 kb on + strand, within EX28DRAFT_3560at 225.230 kb on - strand, within EX28DRAFT_3560at 225.230 kb on - strand, within EX28DRAFT_3560at 225.230 kb on - strand, within EX28DRAFT_3560at 225.230 kb on - strand, within EX28DRAFT_3560at 225.230 kb on - strand, within EX28DRAFT_3560at 225.230 kb on - strand, within EX28DRAFT_3560at 225.392 kb on + strand, within EX28DRAFT_3560at 225.393 kb on - strand, within EX28DRAFT_3560at 225.393 kb on - strand, within EX28DRAFT_3560at 225.393 kb on - strand, within EX28DRAFT_3560at 225.549 kb on + strandat 225.613 kb on - strandat 225.613 kb on - strandat 225.613 kb on - strandat 225.614 kb on + strandat 225.614 kb on + strandat 225.614 kb on + strandat 225.615 kb on - strandat 225.615 kb on - strandat 225.615 kb on - strandat 225.616 kb on + strandat 225.616 kb on + strandat 225.616 kb on + strandat 225.616 kb on + strandat 225.616 kb on + strandat 225.616 kb on + strandat 225.616 kb on + strandat 225.617 kb on - strandat 225.617 kb on - strandat 225.617 kb on - strandat 225.617 kb on - strandat 225.617 kb on - strandat 225.617 kb on - strandat 225.617 kb on - strandat 225.617 kb on - strandat 225.617 kb on - strandat 225.617 kb on - strandat 225.617 kb on - strandat 225.617 kb on - strandat 225.617 kb on - strandat 225.617 kb on - strandat 225.617 kb on - strandat 225.620 kb on + strandat 225.621 kb on - strandat 225.621 kb on - strandat 225.621 kb on - strandat 225.621 kb on - strandat 225.652 kb on - strandat 225.652 kb on - strandat 225.655 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media no stress control
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221,588 + EX28DRAFT_3557 0.78 -0.3
221,588 + EX28DRAFT_3557 0.78 -0.3
221,588 + EX28DRAFT_3557 0.78 -0.1
221,588 + EX28DRAFT_3557 0.78 -1.3
221,589 - EX28DRAFT_3557 0.78 -0.0
221,652 + +0.0
221,652 + -0.1
221,653 - -0.2
221,873 + EX28DRAFT_3558 0.27 -0.0
221,873 + EX28DRAFT_3558 0.27 +0.1
221,873 + EX28DRAFT_3558 0.27 -0.7
221,874 - EX28DRAFT_3558 0.27 -1.9
221,958 + EX28DRAFT_3558 0.40 +0.1
221,958 + EX28DRAFT_3558 0.40 +0.1
221,958 + EX28DRAFT_3558 0.40 +0.4
221,959 - EX28DRAFT_3558 0.40 -0.5
221,964 + EX28DRAFT_3558 0.41 +0.3
222,039 - EX28DRAFT_3558 0.53 -0.5
222,039 - EX28DRAFT_3558 0.53 +0.0
222,123 + EX28DRAFT_3558 0.66 -0.3
222,145 + EX28DRAFT_3558 0.69 -0.0
222,148 + EX28DRAFT_3558 0.70 +0.0
222,148 + EX28DRAFT_3558 0.70 +0.4
222,148 + EX28DRAFT_3558 0.70 -0.4
222,148 + EX28DRAFT_3558 0.70 -0.1
222,148 + EX28DRAFT_3558 0.70 -0.2
222,148 + EX28DRAFT_3558 0.70 -1.1
222,149 - EX28DRAFT_3558 0.70 +0.3
222,149 - EX28DRAFT_3558 0.70 +0.9
222,149 - EX28DRAFT_3558 0.70 +0.0
222,149 - EX28DRAFT_3558 0.70 -0.5
222,149 - EX28DRAFT_3558 0.70 +0.8
222,149 - EX28DRAFT_3558 0.70 -1.3
222,149 - EX28DRAFT_3558 0.70 -0.2
222,149 - EX28DRAFT_3558 0.70 -0.6
222,149 - EX28DRAFT_3558 0.70 -0.3
222,207 - EX28DRAFT_3558 0.79 +0.6
222,236 - EX28DRAFT_3558 0.83 -0.1
222,273 + EX28DRAFT_3558 0.89 +1.0
222,273 + EX28DRAFT_3558 0.89 -1.7
222,273 + EX28DRAFT_3558 0.89 -0.2
222,273 + EX28DRAFT_3558 0.89 +0.0
222,327 - -0.4
222,327 - -2.0
222,327 - +0.1
222,336 + +0.2
222,337 - -0.2
222,337 - -0.3
222,337 - -0.1
222,337 - -0.3
222,641 + +0.4
222,812 - EX28DRAFT_3559 0.13 -0.7
222,992 - EX28DRAFT_3559 0.21 -0.4
223,222 + EX28DRAFT_3559 0.31 +0.4
223,409 + EX28DRAFT_3559 0.39 -0.6
223,534 - EX28DRAFT_3559 0.44 -0.4
223,715 + EX28DRAFT_3559 0.52 -0.0
223,903 + EX28DRAFT_3559 0.60 +0.4
223,904 - EX28DRAFT_3559 0.60 +0.2
223,904 - EX28DRAFT_3559 0.60 -0.5
223,920 - EX28DRAFT_3559 0.61 -0.4
223,924 + EX28DRAFT_3559 0.61 -0.2
223,966 + EX28DRAFT_3559 0.63 +0.0
223,967 - EX28DRAFT_3559 0.63 +0.2
224,084 + EX28DRAFT_3559 0.68 -0.2
224,084 + EX28DRAFT_3559 0.68 -0.4
224,085 - EX28DRAFT_3559 0.68 +0.1
224,183 + EX28DRAFT_3559 0.72 -0.6
224,184 - EX28DRAFT_3559 0.73 -0.8
224,311 + EX28DRAFT_3559 0.78 -0.2
224,312 - EX28DRAFT_3559 0.78 -0.2
224,317 + EX28DRAFT_3559 0.78 -0.7
224,318 - EX28DRAFT_3559 0.78 -0.2
224,365 + EX28DRAFT_3559 0.80 -0.2
224,365 + EX28DRAFT_3559 0.80 -0.0
224,365 + EX28DRAFT_3559 0.80 +0.3
224,365 + EX28DRAFT_3559 0.80 -1.6
224,365 + EX28DRAFT_3559 0.80 -3.1
224,368 + EX28DRAFT_3559 0.81 +0.2
224,368 + EX28DRAFT_3559 0.81 +0.0
224,369 - EX28DRAFT_3559 0.81 -0.4
224,484 - EX28DRAFT_3559 0.86 +0.2
224,587 + +0.1
224,588 - -0.2
224,588 - -0.2
224,588 - +0.4
224,588 - +0.0
224,649 - -0.1
224,666 - +0.1
224,685 - +0.1
224,819 + -0.2
224,819 + -1.2
224,871 + +0.1
224,872 - -0.2
224,872 - +0.1
224,872 - -0.9
224,878 + -0.0
224,879 - +0.1
224,879 - -0.3
225,227 + EX28DRAFT_3560 0.29 +0.8
225,228 - EX28DRAFT_3560 0.30 +0.3
225,228 - EX28DRAFT_3560 0.30 +0.5
225,229 + EX28DRAFT_3560 0.30 -0.5
225,230 - EX28DRAFT_3560 0.30 -0.3
225,230 - EX28DRAFT_3560 0.30 -0.7
225,230 - EX28DRAFT_3560 0.30 -0.0
225,230 - EX28DRAFT_3560 0.30 -0.6
225,230 - EX28DRAFT_3560 0.30 +0.4
225,230 - EX28DRAFT_3560 0.30 -0.5
225,392 + EX28DRAFT_3560 0.63 +1.1
225,393 - EX28DRAFT_3560 0.64 +0.8
225,393 - EX28DRAFT_3560 0.64 +0.1
225,393 - EX28DRAFT_3560 0.64 -0.1
225,549 + -0.1
225,613 - -0.3
225,613 - +0.5
225,613 - -0.2
225,614 + -0.2
225,614 + +0.3
225,614 + -0.2
225,615 - +0.3
225,615 - +0.7
225,615 - -0.3
225,616 + -0.3
225,616 + -0.4
225,616 + -0.2
225,616 + -0.3
225,616 + -0.3
225,616 + +0.2
225,616 + -0.5
225,617 - -0.2
225,617 - -0.4
225,617 - -0.2
225,617 - -0.5
225,617 - -0.1
225,617 - -0.2
225,617 - -0.4
225,617 - +0.0
225,617 - -1.7
225,617 - -2.1
225,617 - -0.3
225,617 - -0.2
225,617 - +1.7
225,617 - +0.2
225,617 - +0.0
225,620 + -0.4
225,621 - +0.1
225,621 - +0.1
225,621 - -0.0
225,621 - -0.4
225,652 - -0.1
225,652 - +0.2
225,655 - +0.1

Or see this region's nucleotide sequence