Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3466

Experiment: MS_media no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3464 and EX28DRAFT_3465 are separated by 106 nucleotidesEX28DRAFT_3465 and EX28DRAFT_3466 are separated by 519 nucleotidesEX28DRAFT_3466 and EX28DRAFT_3467 are separated by 2 nucleotidesEX28DRAFT_3467 and EX28DRAFT_3468 are separated by 23 nucleotidesEX28DRAFT_3468 and EX28DRAFT_3469 are separated by 196 nucleotides EX28DRAFT_3464: EX28DRAFT_3464 - hypothetical protein, at 137,312 to 138,034 _3464 EX28DRAFT_3465: EX28DRAFT_3465 - tRNA, at 138,141 to 138,225 _3465 EX28DRAFT_3466: EX28DRAFT_3466 - hypothetical protein, at 138,745 to 139,287 _3466 EX28DRAFT_3467: EX28DRAFT_3467 - hypothetical protein, at 139,290 to 139,646 _3467 EX28DRAFT_3468: EX28DRAFT_3468 - YecR-like lipoprotein, at 139,670 to 139,990 _3468 EX28DRAFT_3469: EX28DRAFT_3469 - hypothetical protein, at 140,187 to 140,597 _3469 Position (kb) 138 139 140Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 137.854 kb on + strand, within EX28DRAFT_3464at 137.855 kb on - strand, within EX28DRAFT_3464at 137.876 kb on + strand, within EX28DRAFT_3464at 137.944 kb on + strand, within EX28DRAFT_3464at 138.108 kb on + strandat 138.285 kb on + strandat 138.310 kb on + strandat 138.310 kb on + strandat 138.343 kb on + strandat 138.343 kb on + strandat 138.365 kb on + strandat 138.365 kb on + strandat 138.365 kb on + strandat 138.366 kb on - strandat 138.366 kb on - strandat 138.369 kb on + strandat 138.370 kb on - strandat 138.386 kb on + strandat 138.386 kb on + strandat 138.387 kb on - strandat 138.482 kb on + strandat 138.483 kb on - strandat 138.493 kb on + strandat 138.493 kb on + strandat 138.504 kb on - strandat 138.516 kb on + strandat 138.516 kb on + strandat 138.517 kb on - strandat 138.517 kb on - strandat 138.534 kb on - strandat 138.540 kb on + strandat 138.642 kb on + strandat 138.660 kb on - strandat 138.668 kb on + strandat 138.668 kb on + strandat 138.669 kb on - strandat 138.698 kb on + strandat 138.698 kb on + strandat 138.698 kb on + strandat 138.698 kb on + strandat 138.699 kb on - strandat 138.721 kb on + strandat 138.721 kb on + strandat 138.721 kb on + strandat 138.721 kb on + strandat 138.722 kb on - strandat 138.774 kb on - strandat 138.835 kb on + strand, within EX28DRAFT_3466at 138.835 kb on + strand, within EX28DRAFT_3466at 138.836 kb on - strand, within EX28DRAFT_3466at 138.836 kb on - strand, within EX28DRAFT_3466at 138.836 kb on - strand, within EX28DRAFT_3466at 138.836 kb on - strand, within EX28DRAFT_3466at 138.836 kb on - strand, within EX28DRAFT_3466at 138.866 kb on - strand, within EX28DRAFT_3466at 138.866 kb on - strand, within EX28DRAFT_3466at 138.866 kb on - strand, within EX28DRAFT_3466at 138.869 kb on + strand, within EX28DRAFT_3466at 138.869 kb on + strand, within EX28DRAFT_3466at 138.895 kb on + strand, within EX28DRAFT_3466at 138.940 kb on + strand, within EX28DRAFT_3466at 138.941 kb on - strand, within EX28DRAFT_3466at 138.941 kb on - strand, within EX28DRAFT_3466at 138.941 kb on - strand, within EX28DRAFT_3466at 138.981 kb on + strand, within EX28DRAFT_3466at 138.986 kb on - strand, within EX28DRAFT_3466at 139.059 kb on + strand, within EX28DRAFT_3466at 139.075 kb on + strand, within EX28DRAFT_3466at 139.076 kb on - strand, within EX28DRAFT_3466at 139.077 kb on + strand, within EX28DRAFT_3466at 139.077 kb on + strand, within EX28DRAFT_3466at 139.078 kb on - strand, within EX28DRAFT_3466at 139.078 kb on - strand, within EX28DRAFT_3466at 139.139 kb on + strand, within EX28DRAFT_3466at 139.140 kb on - strand, within EX28DRAFT_3466at 139.176 kb on + strand, within EX28DRAFT_3466at 139.176 kb on + strand, within EX28DRAFT_3466at 139.186 kb on + strand, within EX28DRAFT_3466at 139.216 kb on + strand, within EX28DRAFT_3466at 139.226 kb on + strand, within EX28DRAFT_3466at 139.227 kb on - strand, within EX28DRAFT_3466at 139.227 kb on - strand, within EX28DRAFT_3466at 139.227 kb on - strand, within EX28DRAFT_3466at 139.230 kb on + strand, within EX28DRAFT_3466at 139.230 kb on + strand, within EX28DRAFT_3466at 139.230 kb on + strand, within EX28DRAFT_3466at 139.230 kb on + strand, within EX28DRAFT_3466at 139.231 kb on - strand, within EX28DRAFT_3466at 139.231 kb on - strand, within EX28DRAFT_3466at 139.255 kb on + strandat 139.256 kb on - strandat 139.633 kb on - strandat 139.645 kb on - strandat 139.666 kb on + strandat 139.666 kb on + strandat 139.667 kb on - strandat 139.667 kb on - strandat 139.672 kb on - strandat 139.672 kb on - strandat 139.690 kb on + strandat 139.691 kb on - strandat 139.691 kb on - strandat 139.691 kb on - strandat 139.691 kb on - strandat 139.698 kb on + strandat 139.698 kb on + strandat 139.698 kb on + strandat 139.699 kb on - strandat 139.724 kb on - strand, within EX28DRAFT_3468at 139.724 kb on - strand, within EX28DRAFT_3468at 139.759 kb on + strand, within EX28DRAFT_3468at 139.760 kb on - strand, within EX28DRAFT_3468at 139.760 kb on - strand, within EX28DRAFT_3468at 139.847 kb on - strand, within EX28DRAFT_3468at 139.960 kb on + strandat 139.960 kb on + strandat 139.961 kb on - strandat 139.961 kb on - strandat 139.977 kb on - strandat 139.985 kb on - strandat 139.990 kb on + strandat 139.991 kb on - strandat 139.991 kb on - strandat 140.020 kb on + strandat 140.038 kb on - strandat 140.059 kb on + strandat 140.095 kb on + strandat 140.095 kb on + strandat 140.129 kb on - strandat 140.129 kb on - strandat 140.149 kb on - strandat 140.153 kb on + strandat 140.172 kb on + strandat 140.172 kb on + strandat 140.172 kb on + strandat 140.172 kb on + strandat 140.172 kb on + strandat 140.173 kb on - strandat 140.173 kb on - strandat 140.173 kb on - strandat 140.173 kb on - strandat 140.173 kb on - strandat 140.173 kb on - strandat 140.176 kb on + strandat 140.176 kb on + strandat 140.176 kb on + strandat 140.200 kb on + strandat 140.219 kb on + strandat 140.219 kb on + strandat 140.220 kb on - strandat 140.220 kb on - strandat 140.267 kb on + strand, within EX28DRAFT_3469

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media no stress control
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137,854 + EX28DRAFT_3464 0.75 -0.1
137,855 - EX28DRAFT_3464 0.75 +0.2
137,876 + EX28DRAFT_3464 0.78 +0.3
137,944 + EX28DRAFT_3464 0.87 -0.1
138,108 + -0.5
138,285 + -0.4
138,310 + -0.1
138,310 + +0.3
138,343 + -0.2
138,343 + -0.0
138,365 + +0.4
138,365 + -0.1
138,365 + -0.8
138,366 - -1.0
138,366 - -0.4
138,369 + -0.2
138,370 - -0.1
138,386 + -0.4
138,386 + -0.2
138,387 - +0.6
138,482 + -0.2
138,483 - +3.0
138,493 + -0.5
138,493 + +0.4
138,504 - +0.1
138,516 + +0.1
138,516 + -0.2
138,517 - +0.5
138,517 - +0.0
138,534 - -0.3
138,540 + -0.0
138,642 + +0.4
138,660 - -0.2
138,668 + +0.7
138,668 + +0.6
138,669 - +0.0
138,698 + +0.4
138,698 + +0.7
138,698 + +0.1
138,698 + +0.1
138,699 - +0.4
138,721 + -0.2
138,721 + +0.1
138,721 + -0.1
138,721 + -0.3
138,722 - +0.0
138,774 - +0.1
138,835 + EX28DRAFT_3466 0.17 -0.3
138,835 + EX28DRAFT_3466 0.17 +0.2
138,836 - EX28DRAFT_3466 0.17 -0.2
138,836 - EX28DRAFT_3466 0.17 +0.4
138,836 - EX28DRAFT_3466 0.17 -0.1
138,836 - EX28DRAFT_3466 0.17 -0.1
138,836 - EX28DRAFT_3466 0.17 -0.5
138,866 - EX28DRAFT_3466 0.22 -0.2
138,866 - EX28DRAFT_3466 0.22 +0.2
138,866 - EX28DRAFT_3466 0.22 -0.3
138,869 + EX28DRAFT_3466 0.23 -0.3
138,869 + EX28DRAFT_3466 0.23 -0.6
138,895 + EX28DRAFT_3466 0.28 +0.0
138,940 + EX28DRAFT_3466 0.36 +0.0
138,941 - EX28DRAFT_3466 0.36 -1.6
138,941 - EX28DRAFT_3466 0.36 -0.1
138,941 - EX28DRAFT_3466 0.36 -0.0
138,981 + EX28DRAFT_3466 0.43 +0.1
138,986 - EX28DRAFT_3466 0.44 -0.7
139,059 + EX28DRAFT_3466 0.58 -0.4
139,075 + EX28DRAFT_3466 0.61 +1.1
139,076 - EX28DRAFT_3466 0.61 -0.0
139,077 + EX28DRAFT_3466 0.61 -2.1
139,077 + EX28DRAFT_3466 0.61 -0.3
139,078 - EX28DRAFT_3466 0.61 -0.1
139,078 - EX28DRAFT_3466 0.61 -0.2
139,139 + EX28DRAFT_3466 0.73 +0.0
139,140 - EX28DRAFT_3466 0.73 +0.1
139,176 + EX28DRAFT_3466 0.79 +0.4
139,176 + EX28DRAFT_3466 0.79 -0.1
139,186 + EX28DRAFT_3466 0.81 -0.1
139,216 + EX28DRAFT_3466 0.87 -0.6
139,226 + EX28DRAFT_3466 0.89 -0.0
139,227 - EX28DRAFT_3466 0.89 -0.2
139,227 - EX28DRAFT_3466 0.89 -0.4
139,227 - EX28DRAFT_3466 0.89 -1.5
139,230 + EX28DRAFT_3466 0.89 +0.4
139,230 + EX28DRAFT_3466 0.89 -0.0
139,230 + EX28DRAFT_3466 0.89 +0.4
139,230 + EX28DRAFT_3466 0.89 -0.2
139,231 - EX28DRAFT_3466 0.90 -0.1
139,231 - EX28DRAFT_3466 0.90 -0.1
139,255 + +0.0
139,256 - -2.0
139,633 - +0.6
139,645 - +0.2
139,666 + -0.1
139,666 + -0.6
139,667 - +0.5
139,667 - +0.1
139,672 - -0.3
139,672 - +0.4
139,690 + +0.4
139,691 - +0.2
139,691 - +0.3
139,691 - +0.3
139,691 - -0.2
139,698 + -0.1
139,698 + -0.8
139,698 + -0.6
139,699 - +0.5
139,724 - EX28DRAFT_3468 0.17 -0.6
139,724 - EX28DRAFT_3468 0.17 -0.6
139,759 + EX28DRAFT_3468 0.28 -0.3
139,760 - EX28DRAFT_3468 0.28 +0.6
139,760 - EX28DRAFT_3468 0.28 -0.3
139,847 - EX28DRAFT_3468 0.55 -0.6
139,960 + +0.3
139,960 + +3.8
139,961 - -0.1
139,961 - +0.3
139,977 - -0.0
139,985 - -0.3
139,990 + -0.3
139,991 - -0.2
139,991 - +0.3
140,020 + +0.5
140,038 - +0.7
140,059 + -0.3
140,095 + +0.0
140,095 + +0.2
140,129 - -0.6
140,129 - +0.1
140,149 - +0.3
140,153 + +1.5
140,172 + +1.7
140,172 + -0.4
140,172 + -0.5
140,172 + -0.2
140,172 + -0.5
140,173 - -0.1
140,173 - +0.0
140,173 - -3.5
140,173 - -0.5
140,173 - -0.2
140,173 - -0.4
140,176 + -0.3
140,176 + -2.2
140,176 + -0.1
140,200 + +0.7
140,219 + +0.3
140,219 + -1.5
140,220 - +0.8
140,220 - +0.0
140,267 + EX28DRAFT_3469 0.19 -0.0

Or see this region's nucleotide sequence