Experiment: MS_media no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3457 and EX28DRAFT_3458 are separated by 4 nucleotides EX28DRAFT_3458 and EX28DRAFT_3459 are separated by 194 nucleotides EX28DRAFT_3459 and EX28DRAFT_3460 are separated by 1 nucleotides
EX28DRAFT_3457: EX28DRAFT_3457 - Beta-xylosidase, at 131,233 to 132,843
_3457
EX28DRAFT_3458: EX28DRAFT_3458 - transcriptional regulator, IclR family, at 132,848 to 133,606
_3458
EX28DRAFT_3459: EX28DRAFT_3459 - Protein of unknown function (DUF3828), at 133,801 to 134,253
_3459
EX28DRAFT_3460: EX28DRAFT_3460 - hypothetical protein, at 134,255 to 134,617
_3460
Position (kb) 132
133
134 Strain fitness (log2 ratio) -2
-1
0
1 at 132.020 kb on - strand, within EX28DRAFT_3457 at 132.083 kb on - strand, within EX28DRAFT_3457 at 132.326 kb on + strand, within EX28DRAFT_3457 at 132.469 kb on + strand, within EX28DRAFT_3457 at 132.470 kb on - strand, within EX28DRAFT_3457 at 132.472 kb on + strand, within EX28DRAFT_3457 at 132.472 kb on + strand, within EX28DRAFT_3457 at 132.472 kb on + strand, within EX28DRAFT_3457 at 132.472 kb on + strand, within EX28DRAFT_3457 at 132.493 kb on + strand, within EX28DRAFT_3457 at 132.493 kb on + strand, within EX28DRAFT_3457 at 132.639 kb on + strand, within EX28DRAFT_3457 at 132.650 kb on - strand, within EX28DRAFT_3457 at 132.661 kb on + strand, within EX28DRAFT_3457 at 132.704 kb on - strand at 132.704 kb on - strand at 132.730 kb on + strand at 132.731 kb on - strand at 132.820 kb on + strand at 132.821 kb on - strand at 132.829 kb on + strand at 132.830 kb on - strand at 133.082 kb on + strand, within EX28DRAFT_3458 at 133.272 kb on + strand, within EX28DRAFT_3458 at 133.272 kb on + strand, within EX28DRAFT_3458 at 133.272 kb on + strand, within EX28DRAFT_3458 at 133.273 kb on - strand, within EX28DRAFT_3458 at 133.273 kb on - strand, within EX28DRAFT_3458 at 133.451 kb on - strand, within EX28DRAFT_3458 at 133.452 kb on + strand, within EX28DRAFT_3458 at 133.453 kb on - strand, within EX28DRAFT_3458 at 133.453 kb on - strand, within EX28DRAFT_3458 at 133.493 kb on - strand, within EX28DRAFT_3458 at 133.535 kb on - strand at 133.607 kb on - strand at 133.776 kb on + strand at 133.788 kb on + strand at 133.813 kb on - strand at 133.862 kb on - strand, within EX28DRAFT_3459 at 133.888 kb on + strand, within EX28DRAFT_3459 at 133.894 kb on + strand, within EX28DRAFT_3459 at 133.894 kb on + strand, within EX28DRAFT_3459 at 133.895 kb on - strand, within EX28DRAFT_3459 at 133.925 kb on + strand, within EX28DRAFT_3459 at 133.926 kb on - strand, within EX28DRAFT_3459 at 133.926 kb on - strand, within EX28DRAFT_3459 at 133.926 kb on - strand, within EX28DRAFT_3459 at 133.927 kb on + strand, within EX28DRAFT_3459 at 133.927 kb on + strand, within EX28DRAFT_3459 at 133.969 kb on + strand, within EX28DRAFT_3459 at 133.970 kb on - strand, within EX28DRAFT_3459 at 134.096 kb on + strand, within EX28DRAFT_3459 at 134.104 kb on + strand, within EX28DRAFT_3459 at 134.340 kb on + strand, within EX28DRAFT_3460 at 134.366 kb on - strand, within EX28DRAFT_3460 at 134.408 kb on - strand, within EX28DRAFT_3460 at 134.524 kb on + strand, within EX28DRAFT_3460 at 134.605 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media no stress control remove 132,020 - EX28DRAFT_3457 0.49 -2.3 132,083 - EX28DRAFT_3457 0.53 -0.3 132,326 + EX28DRAFT_3457 0.68 -0.5 132,469 + EX28DRAFT_3457 0.77 -0.1 132,470 - EX28DRAFT_3457 0.77 -0.4 132,472 + EX28DRAFT_3457 0.77 -0.0 132,472 + EX28DRAFT_3457 0.77 -0.3 132,472 + EX28DRAFT_3457 0.77 -0.1 132,472 + EX28DRAFT_3457 0.77 -0.2 132,493 + EX28DRAFT_3457 0.78 +0.7 132,493 + EX28DRAFT_3457 0.78 -0.1 132,639 + EX28DRAFT_3457 0.87 -0.3 132,650 - EX28DRAFT_3457 0.88 -0.9 132,661 + EX28DRAFT_3457 0.89 -0.4 132,704 - -0.3 132,704 - +0.6 132,730 + +0.8 132,731 - -0.3 132,820 + -0.2 132,821 - -0.0 132,829 + -0.0 132,830 - +1.0 133,082 + EX28DRAFT_3458 0.31 -0.2 133,272 + EX28DRAFT_3458 0.56 -0.0 133,272 + EX28DRAFT_3458 0.56 -0.9 133,272 + EX28DRAFT_3458 0.56 -0.4 133,273 - EX28DRAFT_3458 0.56 +0.2 133,273 - EX28DRAFT_3458 0.56 -0.5 133,451 - EX28DRAFT_3458 0.79 -0.0 133,452 + EX28DRAFT_3458 0.80 +0.6 133,453 - EX28DRAFT_3458 0.80 +0.3 133,453 - EX28DRAFT_3458 0.80 -0.4 133,493 - EX28DRAFT_3458 0.85 -0.1 133,535 - -0.5 133,607 - -0.1 133,776 + +0.3 133,788 + -0.2 133,813 - -0.2 133,862 - EX28DRAFT_3459 0.13 -0.2 133,888 + EX28DRAFT_3459 0.19 -0.5 133,894 + EX28DRAFT_3459 0.21 -0.4 133,894 + EX28DRAFT_3459 0.21 +1.1 133,895 - EX28DRAFT_3459 0.21 +1.0 133,925 + EX28DRAFT_3459 0.27 +0.3 133,926 - EX28DRAFT_3459 0.28 -0.2 133,926 - EX28DRAFT_3459 0.28 -0.2 133,926 - EX28DRAFT_3459 0.28 +0.1 133,927 + EX28DRAFT_3459 0.28 -0.8 133,927 + EX28DRAFT_3459 0.28 +1.1 133,969 + EX28DRAFT_3459 0.37 -1.0 133,970 - EX28DRAFT_3459 0.37 -0.1 134,096 + EX28DRAFT_3459 0.65 +0.0 134,104 + EX28DRAFT_3459 0.67 +0.1 134,340 + EX28DRAFT_3460 0.23 +0.3 134,366 - EX28DRAFT_3460 0.31 -0.4 134,408 - EX28DRAFT_3460 0.42 -0.3 134,524 + EX28DRAFT_3460 0.74 +0.1 134,605 + -0.1
Or see this region's nucleotide sequence