Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3366

Experiment: MS_media no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3364 and EX28DRAFT_3365 overlap by 8 nucleotidesEX28DRAFT_3365 and EX28DRAFT_3366 overlap by 50 nucleotidesEX28DRAFT_3366 and EX28DRAFT_3367 are separated by 9 nucleotides EX28DRAFT_3364: EX28DRAFT_3364 - yjeF C-terminal region, hydroxyethylthiazole kinase-related/yjeF N-terminal region, at 31,387 to 32,895 _3364 EX28DRAFT_3365: EX28DRAFT_3365 - tRNA threonylcarbamoyl adenosine modification protein YjeE, at 32,888 to 33,349 _3365 EX28DRAFT_3366: EX28DRAFT_3366 - N-acetylmuramoyl-L-alanine amidase, at 33,300 to 34,706 _3366 EX28DRAFT_3367: EX28DRAFT_3367 - DNA mismatch repair protein MutL, at 34,716 to 36,560 _3367 Position (kb) 33 34 35Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 32.340 kb on - strand, within EX28DRAFT_3364at 32.340 kb on - strand, within EX28DRAFT_3364at 32.340 kb on - strand, within EX28DRAFT_3364at 32.379 kb on + strand, within EX28DRAFT_3364at 32.521 kb on - strand, within EX28DRAFT_3364at 32.650 kb on - strand, within EX28DRAFT_3364at 32.882 kb on + strandat 33.370 kb on + strandat 33.455 kb on - strand, within EX28DRAFT_3366at 33.720 kb on + strand, within EX28DRAFT_3366at 33.720 kb on + strand, within EX28DRAFT_3366at 33.734 kb on + strand, within EX28DRAFT_3366at 33.803 kb on + strand, within EX28DRAFT_3366at 33.806 kb on - strand, within EX28DRAFT_3366at 33.806 kb on - strand, within EX28DRAFT_3366at 33.807 kb on + strand, within EX28DRAFT_3366at 33.807 kb on + strand, within EX28DRAFT_3366at 33.808 kb on - strand, within EX28DRAFT_3366at 33.808 kb on - strand, within EX28DRAFT_3366at 33.808 kb on - strand, within EX28DRAFT_3366at 33.809 kb on + strand, within EX28DRAFT_3366at 33.809 kb on + strand, within EX28DRAFT_3366at 33.809 kb on + strand, within EX28DRAFT_3366at 33.809 kb on + strand, within EX28DRAFT_3366at 33.810 kb on - strand, within EX28DRAFT_3366at 33.810 kb on - strand, within EX28DRAFT_3366at 33.810 kb on - strand, within EX28DRAFT_3366at 33.888 kb on - strand, within EX28DRAFT_3366at 34.070 kb on + strand, within EX28DRAFT_3366at 34.071 kb on - strand, within EX28DRAFT_3366at 34.071 kb on - strand, within EX28DRAFT_3366at 34.071 kb on - strand, within EX28DRAFT_3366at 34.104 kb on + strand, within EX28DRAFT_3366at 34.104 kb on + strand, within EX28DRAFT_3366at 34.105 kb on - strand, within EX28DRAFT_3366at 34.109 kb on + strand, within EX28DRAFT_3366at 34.110 kb on - strand, within EX28DRAFT_3366at 34.110 kb on - strand, within EX28DRAFT_3366at 34.338 kb on + strand, within EX28DRAFT_3366at 34.411 kb on + strand, within EX28DRAFT_3366at 34.445 kb on + strand, within EX28DRAFT_3366at 34.445 kb on + strand, within EX28DRAFT_3366at 34.445 kb on + strand, within EX28DRAFT_3366at 34.446 kb on - strand, within EX28DRAFT_3366at 34.524 kb on - strand, within EX28DRAFT_3366at 34.529 kb on + strand, within EX28DRAFT_3366at 34.593 kb on + strandat 34.594 kb on - strandat 34.594 kb on - strandat 34.594 kb on - strandat 34.704 kb on + strandat 34.704 kb on + strandat 35.039 kb on - strand, within EX28DRAFT_3367at 35.169 kb on + strand, within EX28DRAFT_3367at 35.169 kb on + strand, within EX28DRAFT_3367at 35.196 kb on - strand, within EX28DRAFT_3367at 35.484 kb on + strand, within EX28DRAFT_3367at 35.485 kb on - strand, within EX28DRAFT_3367at 35.586 kb on + strand, within EX28DRAFT_3367at 35.586 kb on + strand, within EX28DRAFT_3367at 35.587 kb on - strand, within EX28DRAFT_3367at 35.617 kb on + strand, within EX28DRAFT_3367at 35.618 kb on - strand, within EX28DRAFT_3367at 35.618 kb on - strand, within EX28DRAFT_3367at 35.678 kb on + strand, within EX28DRAFT_3367at 35.679 kb on - strand, within EX28DRAFT_3367

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media no stress control
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32,340 - EX28DRAFT_3364 0.63 +0.3
32,340 - EX28DRAFT_3364 0.63 -1.2
32,340 - EX28DRAFT_3364 0.63 -0.2
32,379 + EX28DRAFT_3364 0.66 +0.0
32,521 - EX28DRAFT_3364 0.75 -0.5
32,650 - EX28DRAFT_3364 0.84 -0.5
32,882 + +0.9
33,370 + +0.6
33,455 - EX28DRAFT_3366 0.11 -1.3
33,720 + EX28DRAFT_3366 0.30 -0.2
33,720 + EX28DRAFT_3366 0.30 -0.5
33,734 + EX28DRAFT_3366 0.31 -0.3
33,803 + EX28DRAFT_3366 0.36 -0.5
33,806 - EX28DRAFT_3366 0.36 -0.6
33,806 - EX28DRAFT_3366 0.36 -0.2
33,807 + EX28DRAFT_3366 0.36 -0.0
33,807 + EX28DRAFT_3366 0.36 -0.7
33,808 - EX28DRAFT_3366 0.36 -0.1
33,808 - EX28DRAFT_3366 0.36 -0.9
33,808 - EX28DRAFT_3366 0.36 -1.4
33,809 + EX28DRAFT_3366 0.36 +0.2
33,809 + EX28DRAFT_3366 0.36 -0.5
33,809 + EX28DRAFT_3366 0.36 -0.5
33,809 + EX28DRAFT_3366 0.36 +0.0
33,810 - EX28DRAFT_3366 0.36 -0.2
33,810 - EX28DRAFT_3366 0.36 -0.1
33,810 - EX28DRAFT_3366 0.36 -0.5
33,888 - EX28DRAFT_3366 0.42 +0.0
34,070 + EX28DRAFT_3366 0.55 -0.4
34,071 - EX28DRAFT_3366 0.55 -0.1
34,071 - EX28DRAFT_3366 0.55 -0.1
34,071 - EX28DRAFT_3366 0.55 +0.2
34,104 + EX28DRAFT_3366 0.57 -0.5
34,104 + EX28DRAFT_3366 0.57 +0.4
34,105 - EX28DRAFT_3366 0.57 +1.3
34,109 + EX28DRAFT_3366 0.57 +0.5
34,110 - EX28DRAFT_3366 0.58 +1.1
34,110 - EX28DRAFT_3366 0.58 -0.4
34,338 + EX28DRAFT_3366 0.74 -0.2
34,411 + EX28DRAFT_3366 0.79 -0.1
34,445 + EX28DRAFT_3366 0.81 +0.0
34,445 + EX28DRAFT_3366 0.81 -0.4
34,445 + EX28DRAFT_3366 0.81 -0.3
34,446 - EX28DRAFT_3366 0.81 -0.2
34,524 - EX28DRAFT_3366 0.87 +0.6
34,529 + EX28DRAFT_3366 0.87 +0.4
34,593 + -0.1
34,594 - -0.6
34,594 - -0.1
34,594 - -0.1
34,704 + -0.4
34,704 + -0.2
35,039 - EX28DRAFT_3367 0.18 -0.5
35,169 + EX28DRAFT_3367 0.25 -0.1
35,169 + EX28DRAFT_3367 0.25 -0.5
35,196 - EX28DRAFT_3367 0.26 -0.3
35,484 + EX28DRAFT_3367 0.42 -4.2
35,485 - EX28DRAFT_3367 0.42 +0.7
35,586 + EX28DRAFT_3367 0.47 -0.0
35,586 + EX28DRAFT_3367 0.47 +0.7
35,587 - EX28DRAFT_3367 0.47 +0.0
35,617 + EX28DRAFT_3367 0.49 +0.8
35,618 - EX28DRAFT_3367 0.49 +0.1
35,618 - EX28DRAFT_3367 0.49 +0.3
35,678 + EX28DRAFT_3367 0.52 -0.3
35,679 - EX28DRAFT_3367 0.52 -0.0

Or see this region's nucleotide sequence