Experiment: MS_media no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3301 and EX28DRAFT_3302 are separated by 282 nucleotides EX28DRAFT_3302 and EX28DRAFT_3303 are separated by 182 nucleotides
EX28DRAFT_3301: EX28DRAFT_3301 - rod shape-determining protein MreB, at 600,833 to 601,876
_3301
EX28DRAFT_3302: EX28DRAFT_3302 - diguanylate cyclase (GGDEF) domain, at 602,159 to 604,099
_3302
EX28DRAFT_3303: EX28DRAFT_3303 - putative quinone oxidoreductase, YhdH/YhfP family, at 604,282 to 605,256
_3303
Position (kb) 602
603
604
605 Strain fitness (log2 ratio) -2
-1
0
1 at 601.991 kb on - strand at 602.047 kb on - strand at 602.068 kb on + strand at 602.108 kb on - strand at 602.108 kb on - strand at 602.133 kb on + strand at 602.170 kb on - strand at 602.301 kb on - strand at 602.331 kb on - strand at 602.397 kb on - strand, within EX28DRAFT_3302 at 602.397 kb on - strand, within EX28DRAFT_3302 at 602.403 kb on - strand, within EX28DRAFT_3302 at 602.403 kb on - strand, within EX28DRAFT_3302 at 602.501 kb on + strand, within EX28DRAFT_3302 at 602.569 kb on + strand, within EX28DRAFT_3302 at 602.631 kb on - strand, within EX28DRAFT_3302 at 602.722 kb on - strand, within EX28DRAFT_3302 at 602.856 kb on + strand, within EX28DRAFT_3302 at 602.860 kb on + strand, within EX28DRAFT_3302 at 602.860 kb on + strand, within EX28DRAFT_3302 at 602.860 kb on + strand, within EX28DRAFT_3302 at 602.860 kb on + strand, within EX28DRAFT_3302 at 602.861 kb on - strand, within EX28DRAFT_3302 at 603.223 kb on + strand, within EX28DRAFT_3302 at 603.224 kb on - strand, within EX28DRAFT_3302 at 603.251 kb on - strand, within EX28DRAFT_3302 at 603.404 kb on - strand, within EX28DRAFT_3302 at 603.454 kb on + strand, within EX28DRAFT_3302 at 603.739 kb on + strand, within EX28DRAFT_3302 at 603.739 kb on + strand, within EX28DRAFT_3302 at 603.740 kb on - strand, within EX28DRAFT_3302 at 603.740 kb on - strand, within EX28DRAFT_3302 at 603.740 kb on - strand, within EX28DRAFT_3302 at 603.740 kb on - strand, within EX28DRAFT_3302 at 603.740 kb on - strand, within EX28DRAFT_3302 at 603.743 kb on + strand, within EX28DRAFT_3302 at 603.743 kb on + strand, within EX28DRAFT_3302 at 603.743 kb on + strand, within EX28DRAFT_3302 at 603.744 kb on - strand, within EX28DRAFT_3302 at 603.744 kb on - strand, within EX28DRAFT_3302 at 603.744 kb on - strand, within EX28DRAFT_3302 at 604.048 kb on + strand at 604.069 kb on + strand at 604.069 kb on + strand at 604.170 kb on - strand at 604.184 kb on - strand at 604.184 kb on - strand at 604.184 kb on - strand at 604.196 kb on - strand at 604.204 kb on - strand at 604.233 kb on - strand at 604.233 kb on - strand at 604.235 kb on - strand at 604.235 kb on - strand at 604.249 kb on - strand at 604.299 kb on - strand at 604.402 kb on + strand, within EX28DRAFT_3303 at 604.403 kb on - strand, within EX28DRAFT_3303 at 604.405 kb on - strand, within EX28DRAFT_3303 at 604.529 kb on + strand, within EX28DRAFT_3303 at 604.529 kb on + strand, within EX28DRAFT_3303 at 604.530 kb on - strand, within EX28DRAFT_3303 at 604.530 kb on - strand, within EX28DRAFT_3303 at 604.827 kb on + strand, within EX28DRAFT_3303 at 604.838 kb on - strand, within EX28DRAFT_3303 at 604.945 kb on - strand, within EX28DRAFT_3303
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media no stress control remove 601,991 - -0.1 602,047 - +0.0 602,068 + -0.3 602,108 - -0.8 602,108 - -1.7 602,133 + +0.0 602,170 - -0.0 602,301 - -1.0 602,331 - -0.5 602,397 - EX28DRAFT_3302 0.12 -1.2 602,397 - EX28DRAFT_3302 0.12 -0.7 602,403 - EX28DRAFT_3302 0.13 -0.4 602,403 - EX28DRAFT_3302 0.13 -1.0 602,501 + EX28DRAFT_3302 0.18 -0.6 602,569 + EX28DRAFT_3302 0.21 -2.0 602,631 - EX28DRAFT_3302 0.24 -0.9 602,722 - EX28DRAFT_3302 0.29 -0.0 602,856 + EX28DRAFT_3302 0.36 -1.4 602,860 + EX28DRAFT_3302 0.36 -1.0 602,860 + EX28DRAFT_3302 0.36 -0.4 602,860 + EX28DRAFT_3302 0.36 -0.3 602,860 + EX28DRAFT_3302 0.36 +0.4 602,861 - EX28DRAFT_3302 0.36 -0.9 603,223 + EX28DRAFT_3302 0.55 -1.1 603,224 - EX28DRAFT_3302 0.55 -0.2 603,251 - EX28DRAFT_3302 0.56 -0.3 603,404 - EX28DRAFT_3302 0.64 -1.3 603,454 + EX28DRAFT_3302 0.67 +0.5 603,739 + EX28DRAFT_3302 0.81 -1.2 603,739 + EX28DRAFT_3302 0.81 +0.3 603,740 - EX28DRAFT_3302 0.81 -1.2 603,740 - EX28DRAFT_3302 0.81 -0.5 603,740 - EX28DRAFT_3302 0.81 -0.5 603,740 - EX28DRAFT_3302 0.81 +0.1 603,740 - EX28DRAFT_3302 0.81 -1.6 603,743 + EX28DRAFT_3302 0.82 -0.7 603,743 + EX28DRAFT_3302 0.82 -0.4 603,743 + EX28DRAFT_3302 0.82 -0.3 603,744 - EX28DRAFT_3302 0.82 -2.6 603,744 - EX28DRAFT_3302 0.82 -0.5 603,744 - EX28DRAFT_3302 0.82 +0.2 604,048 + -0.3 604,069 + -1.1 604,069 + -1.4 604,170 - +0.7 604,184 - +0.4 604,184 - -0.2 604,184 - +0.5 604,196 - +0.5 604,204 - -0.1 604,233 - -0.4 604,233 - +0.1 604,235 - +0.0 604,235 - -0.1 604,249 - -0.5 604,299 - -0.1 604,402 + EX28DRAFT_3303 0.12 +0.2 604,403 - EX28DRAFT_3303 0.12 +0.1 604,405 - EX28DRAFT_3303 0.13 -0.3 604,529 + EX28DRAFT_3303 0.25 -0.4 604,529 + EX28DRAFT_3303 0.25 +0.3 604,530 - EX28DRAFT_3303 0.25 +0.2 604,530 - EX28DRAFT_3303 0.25 -0.0 604,827 + EX28DRAFT_3303 0.56 +0.3 604,838 - EX28DRAFT_3303 0.57 -0.4 604,945 - EX28DRAFT_3303 0.68 -0.2
Or see this region's nucleotide sequence