Experiment: MS_media no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3231 and EX28DRAFT_3232 are separated by 151 nucleotides EX28DRAFT_3232 and EX28DRAFT_3233 are separated by 74 nucleotides EX28DRAFT_3233 and EX28DRAFT_3234 are separated by 30 nucleotides EX28DRAFT_3234 and EX28DRAFT_3235 are separated by 2 nucleotides EX28DRAFT_3235 and EX28DRAFT_3236 overlap by 4 nucleotides
EX28DRAFT_3231: EX28DRAFT_3231 - putative RNA-binding protein, YhbY family, at 529,675 to 530,007
_3231
EX28DRAFT_3232: EX28DRAFT_3232 - transcription elongation factor GreA, at 530,159 to 530,635
_3232
EX28DRAFT_3233: EX28DRAFT_3233 - RNA, at 530,710 to 530,833
_3233
EX28DRAFT_3234: EX28DRAFT_3234 - D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family, at 530,864 to 532,297
_3234
EX28DRAFT_3235: EX28DRAFT_3235 - Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain, at 532,300 to 532,962
_3235
EX28DRAFT_3236: EX28DRAFT_3236 - Signal transduction histidine kinase, at 532,959 to 534,002
_3236
Position (kb) 530
531
532
533 Strain fitness (log2 ratio) -1
0
1
2 at 529.933 kb on - strand, within EX28DRAFT_3231 at 529.933 kb on - strand, within EX28DRAFT_3231 at 529.951 kb on - strand, within EX28DRAFT_3231 at 529.978 kb on - strand at 530.093 kb on + strand at 530.144 kb on + strand at 530.160 kb on + strand at 530.161 kb on - strand at 530.368 kb on + strand, within EX28DRAFT_3232 at 530.390 kb on - strand, within EX28DRAFT_3232 at 530.444 kb on - strand, within EX28DRAFT_3232 at 530.450 kb on - strand, within EX28DRAFT_3232 at 530.453 kb on - strand, within EX28DRAFT_3232 at 530.613 kb on - strand at 530.613 kb on - strand at 530.641 kb on - strand at 530.642 kb on + strand at 530.643 kb on - strand at 530.765 kb on + strand, within EX28DRAFT_3233 at 530.790 kb on - strand, within EX28DRAFT_3233 at 530.826 kb on - strand at 530.826 kb on - strand at 530.829 kb on - strand at 530.905 kb on - strand at 530.939 kb on + strand at 530.940 kb on - strand at 530.940 kb on - strand at 530.944 kb on + strand at 530.944 kb on + strand at 531.196 kb on + strand, within EX28DRAFT_3234 at 531.376 kb on + strand, within EX28DRAFT_3234 at 531.424 kb on - strand, within EX28DRAFT_3234 at 531.623 kb on + strand, within EX28DRAFT_3234 at 531.666 kb on + strand, within EX28DRAFT_3234 at 531.666 kb on + strand, within EX28DRAFT_3234 at 531.756 kb on + strand, within EX28DRAFT_3234 at 531.804 kb on + strand, within EX28DRAFT_3234 at 531.805 kb on - strand, within EX28DRAFT_3234 at 531.914 kb on - strand, within EX28DRAFT_3234 at 531.914 kb on - strand, within EX28DRAFT_3234 at 531.917 kb on - strand, within EX28DRAFT_3234 at 531.950 kb on - strand, within EX28DRAFT_3234 at 531.990 kb on - strand, within EX28DRAFT_3234 at 532.015 kb on - strand, within EX28DRAFT_3234 at 532.136 kb on + strand, within EX28DRAFT_3234 at 532.137 kb on - strand, within EX28DRAFT_3234 at 532.194 kb on - strand at 532.194 kb on - strand at 532.240 kb on + strand at 532.272 kb on - strand at 532.272 kb on - strand at 532.274 kb on - strand at 532.284 kb on - strand at 532.291 kb on + strand at 532.291 kb on + strand at 532.296 kb on - strand at 532.307 kb on + strand at 532.307 kb on + strand at 532.307 kb on + strand at 532.308 kb on - strand at 532.313 kb on + strand at 532.314 kb on - strand at 532.560 kb on + strand, within EX28DRAFT_3235 at 532.560 kb on + strand, within EX28DRAFT_3235 at 532.665 kb on + strand, within EX28DRAFT_3235 at 532.671 kb on + strand, within EX28DRAFT_3235 at 532.677 kb on - strand, within EX28DRAFT_3235 at 532.693 kb on - strand, within EX28DRAFT_3235 at 532.721 kb on + strand, within EX28DRAFT_3235 at 532.830 kb on + strand, within EX28DRAFT_3235 at 532.831 kb on - strand, within EX28DRAFT_3235 at 532.831 kb on - strand, within EX28DRAFT_3235 at 532.834 kb on + strand, within EX28DRAFT_3235 at 532.834 kb on + strand, within EX28DRAFT_3235 at 532.834 kb on + strand, within EX28DRAFT_3235 at 532.834 kb on + strand, within EX28DRAFT_3235 at 532.863 kb on + strand, within EX28DRAFT_3235 at 533.023 kb on + strand at 533.229 kb on - strand, within EX28DRAFT_3236 at 533.269 kb on + strand, within EX28DRAFT_3236 at 533.269 kb on + strand, within EX28DRAFT_3236 at 533.270 kb on - strand, within EX28DRAFT_3236 at 533.270 kb on - strand, within EX28DRAFT_3236 at 533.282 kb on + strand, within EX28DRAFT_3236 at 533.282 kb on + strand, within EX28DRAFT_3236 at 533.283 kb on - strand, within EX28DRAFT_3236 at 533.283 kb on - strand, within EX28DRAFT_3236 at 533.283 kb on - strand, within EX28DRAFT_3236 at 533.287 kb on - strand, within EX28DRAFT_3236 at 533.287 kb on - strand, within EX28DRAFT_3236
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media no stress control remove 529,933 - EX28DRAFT_3231 0.77 +0.8 529,933 - EX28DRAFT_3231 0.77 -0.5 529,951 - EX28DRAFT_3231 0.83 +0.8 529,978 - -0.2 530,093 + -0.2 530,144 + -0.2 530,160 + +0.0 530,161 - -0.3 530,368 + EX28DRAFT_3232 0.44 -0.1 530,390 - EX28DRAFT_3232 0.48 +0.2 530,444 - EX28DRAFT_3232 0.60 -0.1 530,450 - EX28DRAFT_3232 0.61 -0.3 530,453 - EX28DRAFT_3232 0.62 -0.2 530,613 - +0.3 530,613 - +0.0 530,641 - -0.1 530,642 + +0.2 530,643 - -0.0 530,765 + EX28DRAFT_3233 0.44 -0.2 530,790 - EX28DRAFT_3233 0.65 +0.8 530,826 - -0.8 530,826 - -0.1 530,829 - +0.2 530,905 - +0.8 530,939 + -0.6 530,940 - -0.0 530,940 - -1.0 530,944 + +0.6 530,944 + +0.5 531,196 + EX28DRAFT_3234 0.23 +0.6 531,376 + EX28DRAFT_3234 0.36 +0.4 531,424 - EX28DRAFT_3234 0.39 +0.6 531,623 + EX28DRAFT_3234 0.53 +0.0 531,666 + EX28DRAFT_3234 0.56 +2.0 531,666 + EX28DRAFT_3234 0.56 +0.2 531,756 + EX28DRAFT_3234 0.62 -0.1 531,804 + EX28DRAFT_3234 0.66 +0.5 531,805 - EX28DRAFT_3234 0.66 +0.1 531,914 - EX28DRAFT_3234 0.73 +0.1 531,914 - EX28DRAFT_3234 0.73 +0.2 531,917 - EX28DRAFT_3234 0.73 -0.0 531,950 - EX28DRAFT_3234 0.76 +0.3 531,990 - EX28DRAFT_3234 0.79 +0.1 532,015 - EX28DRAFT_3234 0.80 -0.4 532,136 + EX28DRAFT_3234 0.89 +0.3 532,137 - EX28DRAFT_3234 0.89 +0.1 532,194 - -0.3 532,194 - -0.8 532,240 + +0.1 532,272 - -1.0 532,272 - +0.0 532,274 - -0.0 532,284 - -0.0 532,291 + -0.1 532,291 + +0.5 532,296 - +0.2 532,307 + -0.3 532,307 + -0.6 532,307 + +0.7 532,308 - -0.4 532,313 + +0.5 532,314 - -0.4 532,560 + EX28DRAFT_3235 0.39 +0.1 532,560 + EX28DRAFT_3235 0.39 -0.5 532,665 + EX28DRAFT_3235 0.55 +0.1 532,671 + EX28DRAFT_3235 0.56 -0.6 532,677 - EX28DRAFT_3235 0.57 -0.1 532,693 - EX28DRAFT_3235 0.59 -0.2 532,721 + EX28DRAFT_3235 0.63 +0.5 532,830 + EX28DRAFT_3235 0.80 +0.2 532,831 - EX28DRAFT_3235 0.80 -1.4 532,831 - EX28DRAFT_3235 0.80 -0.6 532,834 + EX28DRAFT_3235 0.81 +0.3 532,834 + EX28DRAFT_3235 0.81 +0.3 532,834 + EX28DRAFT_3235 0.81 -0.2 532,834 + EX28DRAFT_3235 0.81 +0.0 532,863 + EX28DRAFT_3235 0.85 -0.4 533,023 + +0.5 533,229 - EX28DRAFT_3236 0.26 -0.9 533,269 + EX28DRAFT_3236 0.30 +0.3 533,269 + EX28DRAFT_3236 0.30 -0.3 533,270 - EX28DRAFT_3236 0.30 +0.1 533,270 - EX28DRAFT_3236 0.30 +0.9 533,282 + EX28DRAFT_3236 0.31 -0.1 533,282 + EX28DRAFT_3236 0.31 -0.2 533,283 - EX28DRAFT_3236 0.31 +0.5 533,283 - EX28DRAFT_3236 0.31 -0.1 533,283 - EX28DRAFT_3236 0.31 -0.6 533,287 - EX28DRAFT_3236 0.31 +0.1 533,287 - EX28DRAFT_3236 0.31 +0.8
Or see this region's nucleotide sequence