Experiment: MS_media no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3084 and EX28DRAFT_3085 are separated by 10 nucleotides EX28DRAFT_3085 and EX28DRAFT_3086 are separated by 105 nucleotides EX28DRAFT_3086 and EX28DRAFT_3087 are separated by 107 nucleotides
EX28DRAFT_3084: EX28DRAFT_3084 - tRNA nucleotidyltransferase/poly(A) polymerase, at 396,415 to 397,656
_3084
EX28DRAFT_3085: EX28DRAFT_3085 - undecaprenyl-diphosphatase UppP, at 397,667 to 398,488
_3085
EX28DRAFT_3086: EX28DRAFT_3086 - dihydroneopterin aldolase, at 398,594 to 398,962
_3086
EX28DRAFT_3087: EX28DRAFT_3087 - acyl-phosphate glycerol 3-phosphate acyltransferase, at 399,070 to 399,690
_3087
Position (kb) 397
398
399 Strain fitness (log2 ratio) -2
-1
0
1 at 397.683 kb on + strand at 397.683 kb on + strand at 397.683 kb on + strand at 397.735 kb on + strand at 397.736 kb on - strand at 397.842 kb on + strand, within EX28DRAFT_3085 at 397.849 kb on + strand, within EX28DRAFT_3085 at 397.850 kb on - strand, within EX28DRAFT_3085 at 397.850 kb on - strand, within EX28DRAFT_3085 at 397.852 kb on - strand, within EX28DRAFT_3085 at 397.852 kb on - strand, within EX28DRAFT_3085 at 398.014 kb on + strand, within EX28DRAFT_3085 at 398.028 kb on + strand, within EX28DRAFT_3085 at 398.029 kb on - strand, within EX28DRAFT_3085 at 398.096 kb on + strand, within EX28DRAFT_3085 at 398.097 kb on - strand, within EX28DRAFT_3085 at 398.118 kb on + strand, within EX28DRAFT_3085 at 398.119 kb on - strand, within EX28DRAFT_3085 at 398.206 kb on + strand, within EX28DRAFT_3085 at 398.207 kb on - strand, within EX28DRAFT_3085 at 398.320 kb on + strand, within EX28DRAFT_3085 at 398.398 kb on + strand, within EX28DRAFT_3085 at 398.399 kb on - strand, within EX28DRAFT_3085 at 398.454 kb on - strand at 398.490 kb on + strand at 398.491 kb on - strand at 398.491 kb on - strand at 398.491 kb on - strand at 398.491 kb on - strand at 398.546 kb on + strand at 398.546 kb on + strand at 398.546 kb on + strand at 398.547 kb on - strand at 398.547 kb on - strand at 398.566 kb on - strand at 398.570 kb on + strand at 398.596 kb on - strand at 399.018 kb on - strand at 399.039 kb on + strand at 399.045 kb on + strand at 399.046 kb on - strand at 399.069 kb on + strand at 399.106 kb on + strand at 399.107 kb on - strand at 399.206 kb on + strand, within EX28DRAFT_3087 at 399.206 kb on + strand, within EX28DRAFT_3087 at 399.207 kb on - strand, within EX28DRAFT_3087 at 399.207 kb on - strand, within EX28DRAFT_3087 at 399.207 kb on - strand, within EX28DRAFT_3087 at 399.290 kb on - strand, within EX28DRAFT_3087 at 399.375 kb on + strand, within EX28DRAFT_3087
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media no stress control remove 397,683 + +0.4 397,683 + -0.1 397,683 + -0.4 397,735 + +0.7 397,736 - -0.2 397,842 + EX28DRAFT_3085 0.21 -0.1 397,849 + EX28DRAFT_3085 0.22 +0.6 397,850 - EX28DRAFT_3085 0.22 +0.8 397,850 - EX28DRAFT_3085 0.22 +0.1 397,852 - EX28DRAFT_3085 0.23 +1.1 397,852 - EX28DRAFT_3085 0.23 -1.0 398,014 + EX28DRAFT_3085 0.42 -0.4 398,028 + EX28DRAFT_3085 0.44 +0.1 398,029 - EX28DRAFT_3085 0.44 -0.2 398,096 + EX28DRAFT_3085 0.52 -0.0 398,097 - EX28DRAFT_3085 0.52 -0.4 398,118 + EX28DRAFT_3085 0.55 +1.1 398,119 - EX28DRAFT_3085 0.55 -1.3 398,206 + EX28DRAFT_3085 0.66 +0.2 398,207 - EX28DRAFT_3085 0.66 +0.2 398,320 + EX28DRAFT_3085 0.79 -0.5 398,398 + EX28DRAFT_3085 0.89 -0.3 398,399 - EX28DRAFT_3085 0.89 -0.7 398,454 - -0.3 398,490 + -0.1 398,491 - +0.4 398,491 - -0.0 398,491 - -0.2 398,491 - -0.2 398,546 + +0.1 398,546 + -2.0 398,546 + +0.3 398,547 - -0.4 398,547 - -1.0 398,566 - +0.5 398,570 + -0.9 398,596 - -0.4 399,018 - -0.4 399,039 + -0.6 399,045 + -0.0 399,046 - +0.3 399,069 + -0.8 399,106 + +0.6 399,107 - +0.2 399,206 + EX28DRAFT_3087 0.22 +0.0 399,206 + EX28DRAFT_3087 0.22 -0.1 399,207 - EX28DRAFT_3087 0.22 -0.9 399,207 - EX28DRAFT_3087 0.22 +0.6 399,207 - EX28DRAFT_3087 0.22 +0.0 399,290 - EX28DRAFT_3087 0.35 +0.6 399,375 + EX28DRAFT_3087 0.49 -0.7
Or see this region's nucleotide sequence