Experiment: MS_media no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3068 and EX28DRAFT_3069 are separated by 28 nucleotides EX28DRAFT_3069 and EX28DRAFT_3070 overlap by 1 nucleotides EX28DRAFT_3070 and EX28DRAFT_3071 are separated by 27 nucleotides EX28DRAFT_3071 and EX28DRAFT_3072 overlap by 4 nucleotides
EX28DRAFT_3068: EX28DRAFT_3068 - DNA topoisomerase IV, B subunit, proteobacterial, at 378,451 to 380,343
_3068
EX28DRAFT_3069: EX28DRAFT_3069 - Predicted esterase, at 380,372 to 380,953
_3069
EX28DRAFT_3070: EX28DRAFT_3070 - Predicted phosphohydrolases, at 380,953 to 381,780
_3070
EX28DRAFT_3071: EX28DRAFT_3071 - Uncharacterized protein conserved in bacteria, at 381,808 to 382,230
_3071
EX28DRAFT_3072: EX28DRAFT_3072 - nudix-type nucleoside diphosphatase, YffH/AdpP family, at 382,227 to 382,859
_3072
Position (kb) 380
381
382 Strain fitness (log2 ratio) -2
-1
0
1 at 380.354 kb on - strand at 380.457 kb on - strand, within EX28DRAFT_3069 at 380.457 kb on - strand, within EX28DRAFT_3069 at 380.457 kb on - strand, within EX28DRAFT_3069 at 380.459 kb on - strand, within EX28DRAFT_3069 at 380.479 kb on - strand, within EX28DRAFT_3069 at 380.479 kb on - strand, within EX28DRAFT_3069 at 380.479 kb on - strand, within EX28DRAFT_3069 at 380.587 kb on - strand, within EX28DRAFT_3069 at 380.587 kb on - strand, within EX28DRAFT_3069 at 380.591 kb on - strand, within EX28DRAFT_3069 at 380.591 kb on - strand, within EX28DRAFT_3069 at 380.591 kb on - strand, within EX28DRAFT_3069 at 380.604 kb on - strand, within EX28DRAFT_3069 at 380.610 kb on + strand, within EX28DRAFT_3069 at 380.610 kb on + strand, within EX28DRAFT_3069 at 380.610 kb on + strand, within EX28DRAFT_3069 at 380.610 kb on + strand, within EX28DRAFT_3069 at 380.610 kb on + strand, within EX28DRAFT_3069 at 380.610 kb on + strand, within EX28DRAFT_3069 at 380.610 kb on + strand, within EX28DRAFT_3069 at 380.611 kb on - strand, within EX28DRAFT_3069 at 380.611 kb on - strand, within EX28DRAFT_3069 at 380.611 kb on - strand, within EX28DRAFT_3069 at 380.733 kb on + strand, within EX28DRAFT_3069 at 380.734 kb on - strand, within EX28DRAFT_3069 at 380.794 kb on + strand, within EX28DRAFT_3069 at 380.794 kb on + strand, within EX28DRAFT_3069 at 380.795 kb on - strand, within EX28DRAFT_3069 at 380.938 kb on - strand at 380.938 kb on - strand at 381.389 kb on - strand, within EX28DRAFT_3070 at 381.389 kb on - strand, within EX28DRAFT_3070 at 381.452 kb on - strand, within EX28DRAFT_3070 at 381.727 kb on + strand at 381.727 kb on + strand at 381.728 kb on - strand at 381.792 kb on - strand at 381.792 kb on - strand at 381.792 kb on - strand at 381.796 kb on - strand at 381.796 kb on - strand at 381.801 kb on + strand at 381.802 kb on - strand at 381.802 kb on - strand at 381.802 kb on - strand at 381.842 kb on - strand at 381.848 kb on + strand at 381.849 kb on - strand at 381.990 kb on - strand, within EX28DRAFT_3071 at 382.023 kb on - strand, within EX28DRAFT_3071 at 382.026 kb on + strand, within EX28DRAFT_3071 at 382.026 kb on + strand, within EX28DRAFT_3071 at 382.027 kb on - strand, within EX28DRAFT_3071 at 382.062 kb on + strand, within EX28DRAFT_3071 at 382.330 kb on + strand, within EX28DRAFT_3072 at 382.331 kb on - strand, within EX28DRAFT_3072 at 382.331 kb on - strand, within EX28DRAFT_3072 at 382.431 kb on - strand, within EX28DRAFT_3072 at 382.575 kb on + strand, within EX28DRAFT_3072 at 382.671 kb on + strand, within EX28DRAFT_3072
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media no stress control remove 380,354 - +0.0 380,457 - EX28DRAFT_3069 0.15 +0.0 380,457 - EX28DRAFT_3069 0.15 -0.1 380,457 - EX28DRAFT_3069 0.15 -1.1 380,459 - EX28DRAFT_3069 0.15 +0.2 380,479 - EX28DRAFT_3069 0.18 -0.1 380,479 - EX28DRAFT_3069 0.18 -0.0 380,479 - EX28DRAFT_3069 0.18 +0.4 380,587 - EX28DRAFT_3069 0.37 -0.2 380,587 - EX28DRAFT_3069 0.37 +0.1 380,591 - EX28DRAFT_3069 0.38 -0.2 380,591 - EX28DRAFT_3069 0.38 -1.3 380,591 - EX28DRAFT_3069 0.38 +0.5 380,604 - EX28DRAFT_3069 0.40 +0.2 380,610 + EX28DRAFT_3069 0.41 +0.0 380,610 + EX28DRAFT_3069 0.41 +0.1 380,610 + EX28DRAFT_3069 0.41 -0.3 380,610 + EX28DRAFT_3069 0.41 -0.5 380,610 + EX28DRAFT_3069 0.41 +0.4 380,610 + EX28DRAFT_3069 0.41 -0.0 380,610 + EX28DRAFT_3069 0.41 -0.1 380,611 - EX28DRAFT_3069 0.41 -1.1 380,611 - EX28DRAFT_3069 0.41 +0.1 380,611 - EX28DRAFT_3069 0.41 +0.9 380,733 + EX28DRAFT_3069 0.62 +0.3 380,734 - EX28DRAFT_3069 0.62 +1.4 380,794 + EX28DRAFT_3069 0.73 +0.0 380,794 + EX28DRAFT_3069 0.73 -0.9 380,795 - EX28DRAFT_3069 0.73 -0.4 380,938 - -0.4 380,938 - -0.1 381,389 - EX28DRAFT_3070 0.53 -1.7 381,389 - EX28DRAFT_3070 0.53 -2.1 381,452 - EX28DRAFT_3070 0.60 +0.0 381,727 + -0.0 381,727 + +0.0 381,728 - +1.6 381,792 - -1.1 381,792 - +0.6 381,792 - -0.6 381,796 - -1.5 381,796 - -0.5 381,801 + -0.4 381,802 - -0.3 381,802 - +0.4 381,802 - -1.2 381,842 - -1.3 381,848 + -0.1 381,849 - -0.1 381,990 - EX28DRAFT_3071 0.43 +0.0 382,023 - EX28DRAFT_3071 0.51 -0.2 382,026 + EX28DRAFT_3071 0.52 -0.0 382,026 + EX28DRAFT_3071 0.52 +0.3 382,027 - EX28DRAFT_3071 0.52 -0.4 382,062 + EX28DRAFT_3071 0.60 -0.1 382,330 + EX28DRAFT_3072 0.16 +0.3 382,331 - EX28DRAFT_3072 0.16 -0.3 382,331 - EX28DRAFT_3072 0.16 +0.2 382,431 - EX28DRAFT_3072 0.32 -0.8 382,575 + EX28DRAFT_3072 0.55 +0.2 382,671 + EX28DRAFT_3072 0.70 +0.2
Or see this region's nucleotide sequence