Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3053

Experiment: MS_media no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3052 and EX28DRAFT_3053 are separated by 29 nucleotidesEX28DRAFT_3053 and EX28DRAFT_3054 are separated by 58 nucleotidesEX28DRAFT_3054 and EX28DRAFT_3055 are separated by 163 nucleotides EX28DRAFT_3052: EX28DRAFT_3052 - potassium uptake protein, TrkH family, at 360,734 to 362,209 _3052 EX28DRAFT_3053: EX28DRAFT_3053 - Putative multicopper oxidases, at 362,239 to 363,651 _3053 EX28DRAFT_3054: EX28DRAFT_3054 - 1-acyl-sn-glycerol-3-phosphate acyltransferases, at 363,710 to 364,447 _3054 EX28DRAFT_3055: EX28DRAFT_3055 - DNA topoisomerase IV, A subunit, proteobacterial, at 364,611 to 366,869 _3055 Position (kb) 362 363 364Strain fitness (log2 ratio) -2 -1 0 1at 361.325 kb on + strand, within EX28DRAFT_3052at 361.458 kb on - strand, within EX28DRAFT_3052at 361.652 kb on + strand, within EX28DRAFT_3052at 361.652 kb on + strand, within EX28DRAFT_3052at 361.652 kb on + strand, within EX28DRAFT_3052at 361.653 kb on - strand, within EX28DRAFT_3052at 361.653 kb on - strand, within EX28DRAFT_3052at 361.841 kb on - strand, within EX28DRAFT_3052at 361.855 kb on + strand, within EX28DRAFT_3052at 361.856 kb on - strand, within EX28DRAFT_3052at 361.903 kb on + strand, within EX28DRAFT_3052at 361.903 kb on + strand, within EX28DRAFT_3052at 361.968 kb on - strand, within EX28DRAFT_3052at 362.026 kb on + strand, within EX28DRAFT_3052at 362.027 kb on - strand, within EX28DRAFT_3052at 362.207 kb on + strandat 362.207 kb on + strandat 362.208 kb on - strandat 362.208 kb on - strandat 362.345 kb on + strandat 362.346 kb on - strandat 362.348 kb on + strandat 362.348 kb on + strandat 362.349 kb on - strandat 362.479 kb on - strand, within EX28DRAFT_3053at 362.710 kb on + strand, within EX28DRAFT_3053at 362.710 kb on + strand, within EX28DRAFT_3053at 362.711 kb on - strand, within EX28DRAFT_3053at 362.711 kb on - strand, within EX28DRAFT_3053at 362.711 kb on - strand, within EX28DRAFT_3053at 362.711 kb on - strand, within EX28DRAFT_3053at 362.711 kb on - strand, within EX28DRAFT_3053at 363.022 kb on - strand, within EX28DRAFT_3053at 363.056 kb on + strand, within EX28DRAFT_3053at 363.099 kb on + strand, within EX28DRAFT_3053at 363.103 kb on - strand, within EX28DRAFT_3053at 363.103 kb on - strand, within EX28DRAFT_3053at 363.122 kb on + strand, within EX28DRAFT_3053at 363.191 kb on + strand, within EX28DRAFT_3053at 363.191 kb on + strand, within EX28DRAFT_3053at 363.192 kb on - strand, within EX28DRAFT_3053at 363.381 kb on - strand, within EX28DRAFT_3053at 363.416 kb on - strand, within EX28DRAFT_3053at 363.431 kb on + strand, within EX28DRAFT_3053at 363.651 kb on + strandat 363.651 kb on + strandat 363.651 kb on + strandat 363.651 kb on + strandat 363.652 kb on - strandat 363.652 kb on - strandat 363.652 kb on - strandat 363.652 kb on - strandat 363.653 kb on + strandat 363.654 kb on - strandat 363.654 kb on - strandat 363.654 kb on - strandat 363.654 kb on - strandat 363.654 kb on - strandat 363.673 kb on + strandat 363.712 kb on - strandat 364.480 kb on - strandat 364.480 kb on - strandat 364.480 kb on - strandat 364.480 kb on - strandat 364.481 kb on + strandat 364.482 kb on - strandat 364.482 kb on - strandat 364.482 kb on - strandat 364.482 kb on - strandat 364.513 kb on - strandat 364.523 kb on - strandat 364.612 kb on + strandat 364.613 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media no stress control
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361,325 + EX28DRAFT_3052 0.40 -0.7
361,458 - EX28DRAFT_3052 0.49 +0.4
361,652 + EX28DRAFT_3052 0.62 -0.3
361,652 + EX28DRAFT_3052 0.62 -0.4
361,652 + EX28DRAFT_3052 0.62 +0.0
361,653 - EX28DRAFT_3052 0.62 -0.5
361,653 - EX28DRAFT_3052 0.62 +0.1
361,841 - EX28DRAFT_3052 0.75 +0.8
361,855 + EX28DRAFT_3052 0.76 +0.2
361,856 - EX28DRAFT_3052 0.76 -0.2
361,903 + EX28DRAFT_3052 0.79 -0.4
361,903 + EX28DRAFT_3052 0.79 -0.9
361,968 - EX28DRAFT_3052 0.84 -1.9
362,026 + EX28DRAFT_3052 0.88 -0.3
362,027 - EX28DRAFT_3052 0.88 -0.2
362,207 + -0.1
362,207 + +0.6
362,208 - +0.2
362,208 - -0.8
362,345 + -1.1
362,346 - -1.2
362,348 + +1.7
362,348 + -0.0
362,349 - +0.3
362,479 - EX28DRAFT_3053 0.17 +1.6
362,710 + EX28DRAFT_3053 0.33 +0.2
362,710 + EX28DRAFT_3053 0.33 -0.1
362,711 - EX28DRAFT_3053 0.33 +0.2
362,711 - EX28DRAFT_3053 0.33 -0.4
362,711 - EX28DRAFT_3053 0.33 +0.1
362,711 - EX28DRAFT_3053 0.33 +0.2
362,711 - EX28DRAFT_3053 0.33 +0.4
363,022 - EX28DRAFT_3053 0.55 +0.2
363,056 + EX28DRAFT_3053 0.58 -0.1
363,099 + EX28DRAFT_3053 0.61 +0.2
363,103 - EX28DRAFT_3053 0.61 -0.7
363,103 - EX28DRAFT_3053 0.61 -0.2
363,122 + EX28DRAFT_3053 0.62 -0.1
363,191 + EX28DRAFT_3053 0.67 +0.5
363,191 + EX28DRAFT_3053 0.67 +0.5
363,192 - EX28DRAFT_3053 0.67 -0.3
363,381 - EX28DRAFT_3053 0.81 +0.5
363,416 - EX28DRAFT_3053 0.83 -0.3
363,431 + EX28DRAFT_3053 0.84 -1.0
363,651 + +0.2
363,651 + -0.6
363,651 + -0.2
363,651 + -0.5
363,652 - +1.1
363,652 - -0.6
363,652 - +0.4
363,652 - -1.1
363,653 + -0.2
363,654 - +0.1
363,654 - -0.1
363,654 - -0.2
363,654 - +0.4
363,654 - -0.1
363,673 + -0.6
363,712 - +0.0
364,480 - -0.5
364,480 - -0.4
364,480 - +0.0
364,480 - +0.5
364,481 + +0.1
364,482 - +0.0
364,482 - -0.2
364,482 - -0.1
364,482 - +0.0
364,513 - -0.0
364,523 - +0.1
364,612 + +0.0
364,613 - -0.2

Or see this region's nucleotide sequence